>SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precursor (EC|
           3.2.1.-) (Soluble cell wall protein 11)
          Length = 542

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +1

Query: 166 NNNIGGDTKTSHLTEEEKKRPCSFPGSSKS*AAVAERPKSMASSFPPNNNQHSCNLAKIY 345
           +++    T +S  + +E     S  GSS S AA+   PK++A  + P N+  SC  A   
Sbjct: 245 SSSTSSSTSSSTSSTQETAATTS-EGSSSSSAAITSSPKAIA--YSPYNDDGSCKSADAV 301

Query: 346 SSKLAV 363
           SS L +
Sbjct: 302 SSDLTL 307

>TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 438

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 32  RLTVISQNNLRFSFRLLQC*HDIL*PTEYSKTTVHCYKLCKN 157
           +L  + +NNL F+FR +   H +   +E  K + HC K+C N
Sbjct: 30  QLLKLKKNNLNFTFRAIHINHQLHPDSE--KWSDHCKKICIN 69

>MTAL1_KLULA (Q08398) Mating-type protein ALPHA1 (Transcription activator|
           Alpha1p) (MATalpha1 protein)
          Length = 261

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 302 LQTIINTHVTSQKYTAQNWLLLTSQFLC 385
           L TII+ H T  K T +NW L+  ++ C
Sbjct: 129 LSTIISKHWTVDKQTRKNWELIAQEYNC 156

>CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3|
          Length = 1396

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 156  FLHNL*QCTVVLEYSVGYNISCQHCRSRKLN 64
            ++ NL  C   LEY  GY ++  H   RKLN
Sbjct: 1319 YMRNLSNCVPTLEYFTGYKMAELHILVRKLN 1349

>PCYOX_PONPY (Q5R748) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -1

Query: 364 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFL 212
           Q+ +     L+ ++S DY +   KKPW+     + P  C S+ ++   ++L
Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYL 457

>PCYOX_MACFA (Q95KC9) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -1

Query: 364 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFL 212
           Q+ +     L+ ++S DY +   KKPW+     + P  C S+ ++   ++L
Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYL 457

>PCYOX_HUMAN (Q9UHG3) Prenylcysteine oxidase precursor (EC 1.8.3.5) (PCL1)|
          Length = 505

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -1

Query: 364 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFL 212
           Q+ +     L+ ++S DY +   KKPW+     + P  C S+ ++   ++L
Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYL 457

>YKG6_CAEEL (P46556) Hypothetical protein B0285.6 in chromosome III|
          Length = 577

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 242 PGNEQGLFFSSSVKWDVFVSPPMLLFLFSSYTI 144
           P  + G+ + S   W  F  PPM+ ++FSS+ I
Sbjct: 246 PNEDHGISYLS---WMAFAIPPMIFYMFSSWFI 275

>RBL2_MAGMG (Q8RTI2) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)|
          Length = 459

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 278 GLSATAA*LLLEPGNEQGLFFSSSVKWDVFVSPPMLLFLFSSYTICNNVLWFWSIL 111
           G +  A+ L L  GN QG+    + K + F  PP  L LF       N+   W +L
Sbjct: 97  GKAMIASFLTLTVGNNQGMSDVENAKMEDFYVPPEFLKLFDGPAC--NISHMWKVL 150

>LUZP1_HUMAN (Q86V48) Leucine zipper protein 1|
          Length = 1076

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = +1

Query: 190 KTSHL-------TEEEKKRPCSF-PGSSKS*AAVAERPKSMASSFPPNNNQHS 324
           K SH+       T+E KK    F PGSS+S    +    S+ S +PP   +HS
Sbjct: 433 KASHMGVSTDSGTQETKKTEDRFVPGSSQSEGKKSREQPSVLSRYPPAAQEHS 485

>NAD2_CAEEL (P32739) Sodium-dependent high-affinity dicarboxylate transporter 2|
           (Na(+)/dicarboxylate cotransporter 2) (NaDC-2) (ceNaDC2)
          Length = 551

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 230 QGLFFSSSVKWDVFVSPPMLLFLFSSYTI 144
           +G    + ++W VF  PPM ++L +SY I
Sbjct: 233 EGQVTMTYLQWMVFAIPPMFVYLLASYII 261

>YJEH_ECOLI (P39277) Inner membrane protein yjeH|
          Length = 418

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 227 GLFFSSSVKWDVFVSPPMLLFLFSSYTICNNVLWFWSILSVTIYRVSIV 81
           GL  +S +   VF  P +   +       NN LW W +L + ++ ++IV
Sbjct: 15  GLLSTSLLGTGVFAVPALAALVAG-----NNSLWAWPVLIILVFPIAIV 58

>YAF7_CAEEL (P52883) Hypothetical protein F46C5.7|
          Length = 199

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
 Frame = -1

Query: 223 FFFLLLSNGMFLCLLQCYYFFSVL------------TQFVTMYCGFGVFCRLQYIVSAL* 80
           FF +++++ +F+ L   +YF SV               F++M C   V   + +  S   
Sbjct: 60  FFLMIIASFVFVLLYLEFYFGSVYNCPALLHLHTLSAAFMSMVCWLSVLIPIFFGESIYI 119

Query: 79  ESKTESKIILAYY-CQPHFSVLMV*F 5
            S+  + +I  YY CQ  F  L+  F
Sbjct: 120 ASRYVAHVIYKYYGCQVIFGSLLTTF 145

>POL_BIV27 (P19561) Pol polyprotein [Contains: Protease (EC 3.4.23.-) (P119)|
           (Retropepsin); Reverse transcriptase/ribonuclease H (EC
           2.7.7.49) (EC 3.1.26.4) (RT) (P72); Integrase (IN)]
          Length = 1056

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 223 RPCSF--PGSSKS*AAVAERPKSMASSFPPNNNQHSCNLAKI 342
           R  SF  PGSS+   A  ++ +S+   FP    +HSC    I
Sbjct: 534 REASFLLPGSSEDWEAALQKEESLTQIFPVKFYRHSCRWTSI 575

>POL_BIV06 (P19560) Pol polyprotein [Contains: Protease (EC 3.4.23.-) (P119)|
           (Retropepsin); Reverse transcriptase/ribonuclease H (EC
           2.7.7.49) (EC 3.1.26.4) (RT) (P72); Integrase (IN)]
          Length = 1056

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 223 RPCSF--PGSSKS*AAVAERPKSMASSFPPNNNQHSCNLAKI 342
           R  SF  PGSS+   A  ++ +S+   FP    +HSC    I
Sbjct: 534 REASFLLPGSSEDWEAALQKEESLTQIFPVKFYRHSCRWTSI 575


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,841,503
Number of Sequences: 219361
Number of extensions: 1128516
Number of successful extensions: 3169
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3169
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)