ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PER_PERAM (Q25637) Period circadian protein 31 0.91
2ARGD_RHILO (Q98BB7) Acetylornithine aminotransferase (EC 2.6.1.1... 28 5.9
3MS57C_DROME (Q9V3J3) Accessory gland-specific peptide 57Dc precu... 28 5.9
4YO078_YEAST (Q08236) Protein YOL078W 28 7.7

>PER_PERAM (Q25637) Period circadian protein|
          Length = 893

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 157 NEPMPQVKSVKRNKTKPY*LQMLLTSVNRGYVQTPTQIAPT 279
           NEP PQ    KRNK K +  + L +SV      T T +  T
Sbjct: 56  NEPFPQPSVTKRNKDKEHKKKKLKSSVTTAATATVTSVVTT 96



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>ARGD_RHILO (Q98BB7) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 399

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 221 ICS*YGLVLFRFTDLTCGIGSFWRCRAHHWYG 126
           +C  +GL+L  + ++ CGIG   +  AH W G
Sbjct: 204 LCDQHGLLLI-YDEVQCGIGRTGKLFAHEWSG 234



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>MS57C_DROME (Q9V3J3) Accessory gland-specific peptide 57Dc precursor (Male|
           accessory gland secretory protein 57Dc) (45-kDa
           cAMP-dependent phosphoprotein) (Pp45)
          Length = 103

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 59  HSNLPVILCNQIGSTAASPGINGHTSDERGTAKMNRCRKSS 181
           H  + ++LC  +GS   +P I      ER    M RC K +
Sbjct: 32  HFLILLLLCGVLGSNGVTPDIKNVAKAERNMHNMLRCLKKN 72



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>YO078_YEAST (Q08236) Protein YOL078W|
          Length = 1176

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 119 INGHTSDERGTAKMNRCRKSSR*NETKPN 205
           + GH S   GTA MNR  K SR N  + N
Sbjct: 409 LGGHESTNDGTAVMNRDSKDSRSNSNEFN 437


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,991,961
Number of Sequences: 219361
Number of extensions: 835487
Number of successful extensions: 1819
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1819
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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