Clone Name | rbastl03c09 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | ZPR1_SCHPO (O13724) Zinc-finger protein zpr1 | 28 | 6.8 | 2 | TPR_HUMAN (P12270) Nucleoprotein TPR | 27 | 8.9 |
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>ZPR1_SCHPO (O13724) Zinc-finger protein zpr1| Length = 459 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -3 Query: 404 REGSFPYTLLLEDQAQLQMLQPYYA 330 REG+ +TL+L+D LQ YYA Sbjct: 396 REGATQFTLILDDPLSQSYLQNYYA 420
>TPR_HUMAN (P12270) Nucleoprotein TPR| Length = 2349 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -2 Query: 393 VSLYSTPRRPSTATNVTT 340 VSL STP+RPST+ V+T Sbjct: 636 VSLASTPKRPSTSQTVST 653 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,914,687 Number of Sequences: 219361 Number of extensions: 1135061 Number of successful extensions: 1644 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 1634 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1643 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)