ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZPR1_SCHPO (O13724) Zinc-finger protein zpr1 28 6.8
2TPR_HUMAN (P12270) Nucleoprotein TPR 27 8.9

>ZPR1_SCHPO (O13724) Zinc-finger protein zpr1|
          Length = 459

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 404 REGSFPYTLLLEDQAQLQMLQPYYA 330
           REG+  +TL+L+D      LQ YYA
Sbjct: 396 REGATQFTLILDDPLSQSYLQNYYA 420



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>TPR_HUMAN (P12270) Nucleoprotein TPR|
          Length = 2349

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -2

Query: 393 VSLYSTPRRPSTATNVTT 340
           VSL STP+RPST+  V+T
Sbjct: 636 VSLASTPKRPSTSQTVST 653


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,914,687
Number of Sequences: 219361
Number of extensions: 1135061
Number of successful extensions: 1644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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