>Y568_RICPR (Q9ZCY3) Hypothetical protein RP568|
          Length = 129

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +3

Query: 174 SKFKFTHKVTTYNWGICSRFQQFHSENYMSRN*ANIF-------LSPSALVWLH*QFILK 332
           S F+   +V+T N+ + S  +Q +SEN    N  NI        L P+ L  L   ++  
Sbjct: 20  SLFRIKDRVSTLNYQLRSVIKQINSEN----NNINILKAEQAYLLLPTRLEKLAAAYLKL 75

Query: 333 EVVFKCEVVLDPLAPPI 383
           E+V   +++ DPLAP I
Sbjct: 76  EIVKSYQMINDPLAPNI 92

>CNOT3_MOUSE (Q8K0V4) CCR4-NOT transcription complex subunit 3 (CCR4-associated|
           factor 3)
          Length = 751

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 389 DGNGWCQRIKNDFTFEYNFLED 324
           D   W QR K  FTFEY +LED
Sbjct: 726 DYEKWGQRKKEGFTFEYRYLED 747

>CNOT3_HUMAN (O75175) CCR4-NOT transcription complex subunit 3 (CCR4-associated|
           factor 3)
          Length = 753

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 389 DGNGWCQRIKNDFTFEYNFLED 324
           D   W QR K  FTFEY +LED
Sbjct: 728 DYEKWGQRKKEGFTFEYRYLED 749

>DEMA_PONPY (Q5R4B6) Dematin (Erythrocyte membrane protein band 4.9)|
          Length = 405

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 117 SRCPQSEP*AELDPDFLETGNWACPMNLMIHSNKW 13
           S+ P ++P     P  +ET  W CP +L +   +W
Sbjct: 171 SKFPAAQPPDPNQPAKIETDYWPCPPSLAVVETEW 205

>DEMA_MOUSE (Q9WV69) Dematin (Erythrocyte membrane protein band 4.9)|
          Length = 405

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 117 SRCPQSEP*AELDPDFLETGNWACPMNLMIHSNKW 13
           S+ P ++P     P  +ET  W CP +L +   +W
Sbjct: 171 SKFPAAQPPDPNQPAKIETDYWPCPPSLAVVETEW 205

>DEMA_HUMAN (Q08495) Dematin (Erythrocyte membrane protein band 4.9)|
          Length = 405

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 117 SRCPQSEP*AELDPDFLETGNWACPMNLMIHSNKW 13
           S+ P ++P     P  +ET  W CP +L +   +W
Sbjct: 171 SKFPAAQPPDPNQPAKIETDYWPCPPSLAVVETEW 205

>ALG12_DROME (Q9VH78) Probable|
           dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichyl-alpha-1,
           6-mannosyltransferase (EC 2.4.1.-) (Mannosyltransferase
           ALG12 homolog)
          Length = 678

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
 Frame = +3

Query: 114 WI*FSLRFRLRARTSNAHNSSKFKFT--HKVTTYNWGICSRFQQFHSENYMSRN*ANIFL 287
           W  + +R  L    S A NS +   T  + V    W       QFH   YM+R   NIF 
Sbjct: 82  WAQYVVRLVLAGAISVAWNSLRQAVTKIYGVEVRLWFTAITITQFHFMFYMTRPLPNIFA 141

Query: 288 SPSAL----VWL---H*QFI----LKEVVFKCEVVL 362
            P  L     WL   H  FI    +  +VF+ E+ L
Sbjct: 142 LPIVLFAIAYWLRDQHKPFIICSGISILVFRSELAL 177

>YZ2T_AGRVI (O34299) Hypothetical protein in TAR-II ttuC' 3'region (ORFZ2)|
           (Fragment)
          Length = 242

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 42  WGMPSSQFLGNLDLIQLKVQTEGIWI 119
           WG+ +S ++GNL L+ L +   G+W+
Sbjct: 97  WGIIASMWIGNLLLVILNLPLIGLWV 122

>YZ2R_AGRVI (P70795) Hypothetical 52.8 kDa protein in TAR-I ttuC' 3'region|
           (ORFZ2)
          Length = 502

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 42  WGMPSSQFLGNLDLIQLKVQTEGIWI 119
           WG+ +S ++GNL L+ L +   G+W+
Sbjct: 357 WGIIASMWIGNLLLVILNLPLIGLWV 382

>HELX_SULSO (P95949) Putative ATP-dependent helicase SSO0112 (EC 3.6.1.-)|
          Length = 875

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -3

Query: 383 NGWCQRIKNDFTFEYNFLEDELSVQPN*GTRAEKNVCSIATHVIFRMELLE 231
           NG+   +K D  F+YN       + P+       NV  I T  + R E+L+
Sbjct: 695 NGFALSVKRDVPFDYNIKSLFEKITPD-------NVYDIVTRAVMRTEMLK 738


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,997,059
Number of Sequences: 219361
Number of extensions: 937385
Number of successful extensions: 1903
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1903
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)