ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469034.1| Oryza sativa (japonica cultivar-group), mRNA 90 6e-15
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 90 6e-15
3gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genom... 90 6e-15
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
5dbj|AK102019.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
6gb|AY110278.1| Zea mays CL14707_1 mRNA sequence 82 2e-12
7gb|BT018500.1| Zea mays clone EL01N0427D01.d mRNA sequence 74 4e-10
8emb|BX832691.1|CNS09YVD Arabidopsis thaliana Full-length cDNA Co... 66 9e-08
9ref|NM_121828.3| Arabidopsis thaliana transcription regulator AT... 64 4e-07
10dbj|AK222056.1| Arabidopsis thaliana mRNA for hypothetical prote... 64 4e-07
11gb|AF370523.1|AF370523 Arabidopsis thaliana Unknown protein (MRG... 64 4e-07
12emb|BX830040.1|CNS0A1I6 Arabidopsis thaliana Full-length cDNA Co... 64 4e-07
13emb|BX829743.1|CNS0A1HT Arabidopsis thaliana Full-length cDNA Co... 64 4e-07
14gb|BT002177.1| Arabidopsis thaliana Unknown protein (At5g18230) ... 64 4e-07
15dbj|AB012246.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 62 1e-06
16gb|AC011225.7|AC011225 Homo sapiens chromosome 18, clone RP11-10... 42 1.4
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
19dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
20dbj|AP004466.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.4
21gb|DQ273270.1| Allium cepa clone 1G-12-89, complete sequence 42 1.4
22gb|AF282130.1| Meleagrid herpesvirus 1 unique long region, IRL r... 40 5.3
23ref|NM_021521.1| Mus musculus mediator of RNA polymerase II tran... 40 5.3
24gb|AC169705.1| Rhesus Macaque BAC CH250-174C17 (Children's Hosp... 40 5.3
25gb|AC125643.3| Rattus norvegicus 4 BAC CH230-55N7 (Children's Ho... 40 5.3
26gb|BC057119.1| Mus musculus mediator of RNA polymerase II transc... 40 5.3
27gb|AC154993.9| Mus musculus chromosome 3, clone RP23-246L14, com... 40 5.3
28emb|AL162212.12| Human DNA sequence from clone RP11-209P2 on chr... 40 5.3
29gb|AC099466.7| Rattus norvegicus 4 BAC CH230-63I9 (Children's Ho... 40 5.3
30emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chr... 40 5.3
31gb|AC090311.12| Homo sapiens chromosome 18, clone RP11-742D12, c... 40 5.3
32gb|AC093419.2| Homo sapiens chromosome 1 clone RP11-135A15, comp... 40 5.3
33gb|AC064800.8| Homo sapiens chromosome 18, clone CTD-2001I24, co... 40 5.3
34gb|AC092040.2| Homo sapiens chromosome 3 clone RP11-129B22, comp... 40 5.3
35dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
36dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
37gb|AF291866.1|AF291866 Meleagrid herpesvirus 1 strain FC126, com... 40 5.3
38dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
39dbj|AP002856.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.3
40gb|AF071310.1|AF071310 Mus musculus OPA-containing protein 1 mRN... 40 5.3
41emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4,... 40 5.3
42emb|CT025734.8| Mouse DNA sequence from clone RP24-375J21 on chr... 40 5.3
43emb|AL683892.12| Mouse DNA sequence from clone RP23-440J15 on ch... 40 5.3 
>ref|XM_469034.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2662

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                 
Query: 313  actgacagttcatcctcaaggaagttgtattcaaatgtgaagtcgttcttgat 365
            |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2649 actgacagctcatcctcaaggaagttgtactcaaatgtgaagtcgttcttgat 2597
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                     
Query: 313      actgacagttcatcctcaaggaagttgtattcaaatgtgaagtcgttcttgat 365
                |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 25058422 actgacagctcatcctcaaggaagttgtactcaaatgtgaagtcgttcttgat 25058370



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 222      tgttccagattccaacagttccattctgaaaattaca 258
                |||||||||||||| ||||||| |||| ||| |||||
Sbjct: 25058521 tgttccagattccagcagttccgttctaaaagttaca 25058485
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>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete
             sequence
          Length = 170020

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                  
Query: 313   actgacagttcatcctcaaggaagttgtattcaaatgtgaagtcgttcttgat 365
             |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 90229 actgacagctcatcctcaaggaagttgtactcaaatgtgaagtcgttcttgat 90177



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 222   tgttccagattccaacagttccattctgaaaattaca 258
             |||||||||||||| ||||||| |||| ||| |||||
Sbjct: 90328 tgttccagattccagcagttccgttctaaaagttaca 90292
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                     
Query: 313      actgacagttcatcctcaaggaagttgtattcaaatgtgaagtcgttcttgat 365
                |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 25149731 actgacagctcatcctcaaggaagttgtactcaaatgtgaagtcgttcttgat 25149679



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 222      tgttccagattccaacagttccattctgaaaattaca 258
                |||||||||||||| ||||||| |||| ||| |||||
Sbjct: 25149830 tgttccagattccagcagttccgttctaaaagttaca 25149794
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>dbj|AK102019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080H16, full
            insert sequence
          Length = 2754

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 51/53 (96%)
 Strand = Plus / Minus

                                                                 
Query: 313  actgacagttcatcctcaaggaagttgtattcaaatgtgaagtcgttcttgat 365
            |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2591 actgacagctcatcctcaaggaagttgtactcaaatgtgaagtcgttcttgat 2539



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 222  tgttccagattccaacagttccattctgaaaattaca 258
            |||||||||||||| ||||||| |||| ||| |||||
Sbjct: 2690 tgttccagattccagcagttccgttctaaaagttaca 2654
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>gb|AY110278.1| Zea mays CL14707_1 mRNA sequence
          Length = 988

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Plus

                                                                       
Query: 301 tagtttggttgcactgacagttcatcctcaaggaagttgtattcaaatgtgaagtcgttc 360
           ||||||| ||| ||||| || |||||||| ||| ||||||| |||||||||||||| |||
Sbjct: 286 tagtttgtttgtactgatagctcatcctccaggtagttgtactcaaatgtgaagtcattc 345

                            
Query: 361 ttgatcctttggcacca 377
           ||||| |||||||||||
Sbjct: 346 ttgattctttggcacca 362
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>gb|BT018500.1| Zea mays clone EL01N0427D01.d mRNA sequence
          Length = 1263

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 301 tagtttggttgcactgacagttcatcctcaaggaagttgtattcaaatgtgaagtcgttc 360
           ||||||| ||| ||||| || |||||||| | ||||||||| || ||||||||||| |||
Sbjct: 521 tagtttgtttgtactgatagctcatcctccaagaagttgtactcgaatgtgaagtcattc 462

                            
Query: 361 ttgatcctttggcacca 377
           ||||| |||||||||||
Sbjct: 461 ttgattctttggcacca 445
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>emb|BX832691.1|CNS09YVD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH8ZG06 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2794

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                     
Query: 337  ttgtattcaaatgtgaagtcgttcttgatcctttggcacca 377
            ||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 2679 ttgtattcaaatgtgaactcgtttttgatcctttggcacca 2639
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>ref|NM_121828.3| Arabidopsis thaliana transcription regulator AT5G18230 mRNA, complete
            cds
          Length = 2876

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 338  tgtattcaaatgtgaagtcgttcttgatcctttggcacca 377
            |||||||||||||||| ||||| |||||||||||||||||
Sbjct: 2685 tgtattcaaatgtgaactcgtttttgatcctttggcacca 2646
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>dbj|AK222056.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL22-79-B04
          Length = 816

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 338 tgtattcaaatgtgaagtcgttcttgatcctttggcacca 377
           |||||||||||||||| ||||| |||||||||||||||||
Sbjct: 673 tgtattcaaatgtgaactcgtttttgatcctttggcacca 634
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>gb|AF370523.1|AF370523 Arabidopsis thaliana Unknown protein (MRG7.18) mRNA, complete cds
          Length = 2816

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 338  tgtattcaaatgtgaagtcgttcttgatcctttggcacca 377
            |||||||||||||||| ||||| |||||||||||||||||
Sbjct: 2684 tgtattcaaatgtgaactcgtttttgatcctttggcacca 2645
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>emb|BX830040.1|CNS0A1I6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB55ZC08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 945

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 338 tgtattcaaatgtgaagtcgttcttgatcctttggcacca 377
           |||||||||||||||| ||||| |||||||||||||||||
Sbjct: 847 tgtattcaaatgtgaactcgtttttgatcctttggcacca 808
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>emb|BX829743.1|CNS0A1HT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB33ZC10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 860

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 338 tgtattcaaatgtgaagtcgttcttgatcctttggcacca 377
           |||||||||||||||| ||||| |||||||||||||||||
Sbjct: 668 tgtattcaaatgtgaactcgtttttgatcctttggcacca 629
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>gb|BT002177.1| Arabidopsis thaliana Unknown protein (At5g18230) mRNA, complete cds
          Length = 2599

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 338  tgtattcaaatgtgaagtcgttcttgatcctttggcacca 377
            |||||||||||||||| ||||| |||||||||||||||||
Sbjct: 2503 tgtattcaaatgtgaactcgtttttgatcctttggcacca 2464
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>dbj|AB012246.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG7
          Length = 83948

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                    
Query: 338   tgtattcaaatgtgaagtcgttcttgatcctttggcacc 376
             |||||||||||||||| ||||| ||||||||||||||||
Sbjct: 45145 tgtattcaaatgtgaactcgtttttgatcctttggcacc 45183
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>gb|AC011225.7|AC011225 Homo sapiens chromosome 18, clone RP11-10L17, complete sequence
          Length = 148835

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     agtccatttatttgaatgtat 30
              |||||||||||||||||||||
Sbjct: 134550 agtccatttatttgaatgtat 134530
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 21       ttgaatgtatcatcaaattca 41
                |||||||||||||||||||||
Sbjct: 30131140 ttgaatgtatcatcaaattca 30131120
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>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0685G12
          Length = 149155

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 21     ttgaatgtatcatcaaattca 41
              |||||||||||||||||||||
Sbjct: 110737 ttgaatgtatcatcaaattca 110717
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>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1124_G07
          Length = 93240

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 21   ttgaatgtatcatcaaattca 41
            |||||||||||||||||||||
Sbjct: 3844 ttgaatgtatcatcaaattca 3824
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>dbj|AP004466.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09C23, TM0001,
             complete sequence
          Length = 103397

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   cacaaggttacaacttacaac 212
             |||||||||||||||||||||
Sbjct: 18231 cacaaggttacaacttacaac 18251
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>gb|DQ273270.1| Allium cepa clone 1G-12-89, complete sequence
          Length = 107859

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 6     ttcaagtccatttatttgaatgtat 30
             ||||||||||| |||||||||||||
Sbjct: 66015 ttcaagtccatatatttgaatgtat 65991
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>gb|AF282130.1| Meleagrid herpesvirus 1 unique long region, IRL region, IRS region,
             unique short region, complete sequences and IRS partial
             sequence
          Length = 151102

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    catttatttgaatgtatcat 33
             ||||||||||||||||||||
Sbjct: 22724 catttatttgaatgtatcat 22705
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>ref|NM_021521.1| Mus musculus mediator of RNA polymerase II transcription, subunit 12
            homolog (yeast) (Med12), mRNA
          Length = 6462

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 289  gccctagtgccctagtttgg 308
            ||||||||||||||||||||
Sbjct: 1025 gccctagtgccctagtttgg 1044
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>gb|AC169705.1| Rhesus Macaque  BAC CH250-174C17 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 181644

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    aaatttaaattcacccacaa 196
              ||||||||||||||||||||
Sbjct: 171293 aaatttaaattcacccacaa 171274
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>gb|AC125643.3| Rattus norvegicus 4 BAC CH230-55N7 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 216677

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 8    caagtccatttatttgaatg 27
            ||||||||||||||||||||
Sbjct: 3117 caagtccatttatttgaatg 3136
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>gb|BC057119.1| Mus musculus mediator of RNA polymerase II transcription, subunit 12
            homolog (yeast), mRNA (cDNA clone IMAGE:6830443), partial
            cds
          Length = 6642

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 289  gccctagtgccctagtttgg 308
            ||||||||||||||||||||
Sbjct: 1025 gccctagtgccctagtttgg 1044
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>gb|AC154993.9| Mus musculus chromosome 3, clone RP23-246L14, complete sequence
          Length = 208416

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 51    cccagttcccagtttctaggaaat 74
             |||||||||||||| |||||||||
Sbjct: 82374 cccagttcccagttactaggaaat 82397
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>emb|AL162212.12| Human DNA sequence from clone RP11-209P2 on chromosome 13 Contains a
             rab9 effector p40 (RAB9P40) pseudogene, complete sequence
          Length = 124418

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   aacagttccattctgaaaat 254
             ||||||||||||||||||||
Sbjct: 56442 aacagttccattctgaaaat 56423
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>gb|AC099466.7| Rattus norvegicus 4 BAC CH230-63I9 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 227298

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      caagtccatttatttgaatg 27
              ||||||||||||||||||||
Sbjct: 100058 caagtccatttatttgaatg 100077
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>emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chromosome 11 no genes,
             complete sequence
          Length = 216199

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   aacttacaactggggaattt 222
             ||||||||||||||||||||
Sbjct: 22548 aacttacaactggggaattt 22529
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>gb|AC090311.12| Homo sapiens chromosome 18, clone RP11-742D12, complete sequence
          Length = 97882

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   aatgcacacaacagctctaa 178
             ||||||||||||||||||||
Sbjct: 96961 aatgcacacaacagctctaa 96980
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>gb|AC093419.2| Homo sapiens chromosome 1 clone RP11-135A15, complete sequence
          Length = 163209

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    aattgagcaaacatttttct 286
              ||||||||||||||||||||
Sbjct: 142292 aattgagcaaacatttttct 142273
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>gb|AC064800.8| Homo sapiens chromosome 18, clone CTD-2001I24, complete sequence
          Length = 131409

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   aatgcacacaacagctctaa 178
             ||||||||||||||||||||
Sbjct: 40725 aatgcacacaacagctctaa 40744
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>gb|AC092040.2| Homo sapiens chromosome 3 clone RP11-129B22, complete sequence
          Length = 171177

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   cctagtgccctagtttggtt 310
             ||||||||||||||||||||
Sbjct: 93018 cctagtgccctagtttggtt 93037
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 168     aacagctctaaatttaaatt 187
               ||||||||||||||||||||
Sbjct: 2028326 aacagctctaaatttaaatt 2028345
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 16       tttatttgaatgtatcatca 35
                ||||||||||||||||||||
Sbjct: 20329048 tttatttgaatgtatcatca 20329067
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>gb|AF291866.1|AF291866 Meleagrid herpesvirus 1 strain FC126, complete genome
          Length = 159160

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    catttatttgaatgtatcat 33
             ||||||||||||||||||||
Sbjct: 28801 catttatttgaatgtatcat 28782
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>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1439_F07
          Length = 153743

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     tttatttgaatgtatcatca 35
              ||||||||||||||||||||
Sbjct: 108175 tttatttgaatgtatcatca 108194
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>dbj|AP002856.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-816H13, complete
              sequence
          Length = 227942

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    aaatttaaattcacccacaa 196
              ||||||||||||||||||||
Sbjct: 156849 aaatttaaattcacccacaa 156830
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>gb|AF071310.1|AF071310 Mus musculus OPA-containing protein 1 mRNA, complete cds
          Length = 6478

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 289  gccctagtgccctagtttgg 308
            ||||||||||||||||||||
Sbjct: 1041 gccctagtgccctagtttgg 1060
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>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06,
             complete sequence
          Length = 126447

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   aacagctctaaatttaaatt 187
             ||||||||||||||||||||
Sbjct: 44986 aacagctctaaatttaaatt 45005
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>emb|CT025734.8| Mouse DNA sequence from clone RP24-375J21 on chromosome 14, complete
              sequence
          Length = 187933

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    tgttccagattccaacagtt 241
              ||||||||||||||||||||
Sbjct: 169002 tgttccagattccaacagtt 169021
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>emb|AL683892.12| Mouse DNA sequence from clone RP23-440J15 on chromosome X, complete
             sequence
          Length = 136809

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   gccctagtgccctagtttgg 308
             ||||||||||||||||||||
Sbjct: 17016 gccctagtgccctagtttgg 17035


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,218,980
Number of Sequences: 3902068
Number of extensions: 4218980
Number of successful extensions: 82565
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82353
Number of HSP's gapped (non-prelim): 212
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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