ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03c07 |
|---|---|
| Clone Library Name | barley_pub |
>PDC2_ORYSA (P51848) Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC)| Length = 603 Score = 71.2 bits (173), Expect = 6e-13 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -1 Query: 318 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 220 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ Sbjct: 571 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 603
>PDC3_MAIZE (Q05327) Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC)| (Fragment) Length = 202 Score = 71.2 bits (173), Expect = 6e-13 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -1 Query: 318 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 220 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ Sbjct: 170 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 202
>PDC2_MAIZE (Q05326) Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC)| (Fragment) Length = 106 Score = 69.7 bits (169), Expect = 2e-12 Identities = 32/33 (96%), Positives = 32/33 (96%) Frame = -1 Query: 318 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 220 FIEVI HKDDTSKELLEWGSRVSAANSRPPNPQ Sbjct: 74 FIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 106
>PDC1_MAIZE (P28516) Pyruvate decarboxylase isozyme 1 (EC 4.1.1.1) (PDC)| Length = 610 Score = 69.7 bits (169), Expect = 2e-12 Identities = 32/33 (96%), Positives = 32/33 (96%) Frame = -1 Query: 318 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 220 FIEVI HKDDTSKELLEWGSRVSAANSRPPNPQ Sbjct: 578 FIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 610
>PDC2_PEA (P51851) Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC)| (Fragment) Length = 405 Score = 69.7 bits (169), Expect = 2e-12 Identities = 32/33 (96%), Positives = 32/33 (96%) Frame = -1 Query: 318 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 220 FIEVI HKDDTSKELLEWGSRVSAANSRPPNPQ Sbjct: 373 FIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 405
>PDC3_ORYSA (P51849) Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC)| Length = 585 Score = 69.7 bits (169), Expect = 2e-12 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -1 Query: 318 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 220 FIEV+AHKDDTSKELL+WGSRVSAANSRPPNPQ Sbjct: 553 FIEVVAHKDDTSKELLDWGSRVSAANSRPPNPQ 585
>PDC1_ORYSA (P51847) Pyruvate decarboxylase isozyme 1 (EC 4.1.1.1) (PDC)| Length = 602 Score = 69.3 bits (168), Expect = 2e-12 Identities = 31/33 (93%), Positives = 32/33 (96%) Frame = -1 Query: 318 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 220 FIE+I HKDDTSKELLEWGSRVSAANSRPPNPQ Sbjct: 570 FIEIIVHKDDTSKELLEWGSRVSAANSRPPNPQ 602
>PDC1_PEA (P51850) Pyruvate decarboxylase isozyme 1 (EC 4.1.1.1) (PDC)| Length = 593 Score = 68.6 bits (166), Expect = 4e-12 Identities = 31/33 (93%), Positives = 32/33 (96%) Frame = -1 Query: 318 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 220 FIEV AHKDDTSKELLEWGSRV+AANSRPPNPQ Sbjct: 561 FIEVFAHKDDTSKELLEWGSRVAAANSRPPNPQ 593
>PDC2_TOBAC (P51846) Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC)| Length = 614 Score = 65.1 bits (157), Expect = 4e-11 Identities = 29/33 (87%), Positives = 30/33 (90%) Frame = -1 Query: 318 FIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 220 FIEVI HKDDTSKELLEWGSRV +AN RPPNPQ Sbjct: 582 FIEVIVHKDDTSKELLEWGSRVCSANGRPPNPQ 614
>PDC_NEUCR (P33287) Pyruvate decarboxylase (EC 4.1.1.1) (8-10 nm cytoplasmic| filament-associated protein) (P59NC) Length = 570 Score = 38.9 bits (89), Expect = 0.003 Identities = 17/29 (58%), Positives = 21/29 (72%) Frame = -1 Query: 315 IEVIAHKDDTSKELLEWGSRVSAANSRPP 229 IE +DD SKEL+ WG V+AAN+RPP Sbjct: 535 IECTIDQDDCSKELITWGHYVAAANARPP 563
>PDC3_SCHPO (Q9P7P6) Probable pyruvate decarboxylase C186.09 (EC 4.1.1.1)| Length = 572 Score = 37.4 bits (85), Expect = 0.010 Identities = 16/29 (55%), Positives = 19/29 (65%) Frame = -1 Query: 315 IEVIAHKDDTSKELLEWGSRVSAANSRPP 229 IE +DD SKEL+ WG V AAN +PP Sbjct: 541 IECNIDQDDCSKELINWGHNVGAANGKPP 569
>PDC_ZYMMO (P06672) Pyruvate decarboxylase (EC 4.1.1.1) (PDC)| Length = 568 Score = 36.6 bits (83), Expect = 0.016 Identities = 15/29 (51%), Positives = 22/29 (75%) Frame = -1 Query: 315 IEVIAHKDDTSKELLEWGSRVSAANSRPP 229 IE ++D ++EL++WG RV+AANSR P Sbjct: 535 IECFIGREDCTEELVKWGKRVAAANSRKP 563
>SOMA_NYCPY (Q9GMB2) Somatotropin precursor (Growth hormone)| Length = 217 Score = 32.0 bits (71), Expect = 0.40 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +1 Query: 199 VLWSTRLLGVGWPGVGSGNPGAPFQKLFAGVVLVRDHLDE 318 +L + LLG+ WP P P LFA VL HL + Sbjct: 10 LLLAVALLGLPWPQEAGAFPAMPLSSLFANAVLRAQHLHQ 49
>SOMA_GALSE (Q9GKA1) Somatotropin precursor (Growth hormone)| Length = 217 Score = 32.0 bits (71), Expect = 0.40 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +1 Query: 199 VLWSTRLLGVGWPGVGSGNPGAPFQKLFAGVVLVRDHLDE 318 +L + LLG+ WP P P LFA VL HL + Sbjct: 10 LLLAVALLGLPWPQEAGAFPAMPLSSLFANAVLRAQHLHQ 49
>CP1B1_MOUSE (Q64429) Cytochrome P450 1B1 (EC 1.14.14.1) (CYPIB1) (P450CMEF)| (P450EF) Length = 543 Score = 30.8 bits (68), Expect = 0.89 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +3 Query: 222 GGWVAWSWQRKPWSPIPEALCW 287 G W+ WQRKPWS P W Sbjct: 36 GQWLLRQWQRKPWSSPPGPFPW 57
>PNUC_SALTY (P24520) Protein pnuC| Length = 239 Score = 30.8 bits (68), Expect = 0.89 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 8/33 (24%) Frame = +3 Query: 225 GWVAWSWQRKP--------WSPIPEALCWCRPC 299 GW AWS Q K W P+P+A+ W C Sbjct: 84 GWYAWSRQTKDNQAELKIRWLPLPKAMAWLAIC 116
>TCNA_TRYCR (P23253) Sialidase (EC 3.2.1.18) (Neuraminidase) (NA) (Major| surface antigen) Length = 1162 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 287 PAKSFWNGAPGFPLPTPGHPTPSRRVDQSTPG 192 PA S +G P P+ + H TPS VD S G Sbjct: 783 PADSSAHGTPSTPVDSSAHSTPSTPVDSSAHG 814 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -2 Query: 287 PAKSFWNGAPGFPLPTPGHPTPSRRVDQSTPG 192 P S +GAP P + H TPS VD S G Sbjct: 687 PVDSSAHGAPSTPADSSAHGTPSTPVDSSAHG 718 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -2 Query: 287 PAKSFWNGAPGFPLPTPGHPTPSRRVDQSTPG 192 P S +G P P+ + H TPS VD S G Sbjct: 807 PVDSSAHGTPSTPVDSSAHSTPSTPVDSSAHG 838 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -2 Query: 287 PAKSFWNGAPGFPLPTPGHPTPSRRVDQS 201 PA S +G P P+ + H TPS VD S Sbjct: 651 PADSSAHGTPSTPVDSSAHSTPSTPVDSS 679 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -2 Query: 287 PAKSFWNGAPGFPLPTPGHPTPSRRVDQSTPG 192 PA S +G P P+ + H TPS D S G Sbjct: 627 PADSSAHGTPSTPVDSSAHGTPSTPADSSAHG 658 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -2 Query: 287 PAKSFWNGAPGFPLPTPGHPTPSRRVDQSTPG 192 PA S +G P P + H TPS D S G Sbjct: 1071 PADSSAHGTPSTPADSSAHSTPSTPADSSAHG 1102 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -2 Query: 287 PAKSFWNGAPGFPLPTPGHPTPSRRVDQS 201 PA S +G P P + H TPS VD S Sbjct: 1035 PADSSAHGTPSTPADSSAHSTPSTPVDSS 1063
>PNUC_SHIFL (P0AFK3) Protein pnuC| Length = 239 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 8/36 (22%) Frame = +3 Query: 225 GWVAWSWQRKP--------WSPIPEALCWCRPCARS 308 GW AWS Q W P+P+AL W C S Sbjct: 84 GWYAWSRQTSQNEAELKIRWLPLPKALSWLAVCVVS 119
>PNUC_ECOLI (P0AFK2) Protein pnuC| Length = 239 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 8/36 (22%) Frame = +3 Query: 225 GWVAWSWQRKP--------WSPIPEALCWCRPCARS 308 GW AWS Q W P+P+AL W C S Sbjct: 84 GWYAWSRQTSQNEAELKIRWLPLPKALSWLAVCVVS 119
>CP1B1_RAT (Q64678) Cytochrome P450 1B1 (EC 1.14.14.1) (CYPIB1) (P450RAP)| Length = 543 Score = 29.3 bits (64), Expect = 2.6 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +3 Query: 222 GGWVAWSWQRKPWSPIPEALCW 287 G W+ W+RKPWS P W Sbjct: 36 GQWLLRQWRRKPWSSPPGPFPW 57
>NPT2C_MOUSE (Q80SU6) Sodium-dependent phosphate transport protein 2C| (Sodium/phosphate cotransporter 2C) (Na(+)/Pi cotransporter 2C) (Sodium-phosphate transport protein 2C) (Na(+)-dependent phosphate cotransporter 2C) (NaPi-2c) (Solute carrier family 34 Length = 601 Score = 28.9 bits (63), Expect = 3.4 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = +3 Query: 237 WSWQRKPWSPIPEALCWCRPCARSP 311 W +PW + A C CR C+ SP Sbjct: 557 WLHSLEPWDRLVTACCPCRACSNSP 581
>SOMA_RABIT (P46407) Somatotropin precursor (Growth hormone)| Length = 216 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = +1 Query: 217 LLGVGWPGVGSGNPGAPFQKLFAGVVLVRDHLDE 318 LL + WP S P P LFA VL HL + Sbjct: 15 LLCLPWPQEASAFPAMPLSSLFANAVLRAQHLHQ 48
>SOMA_CAMDR (Q7YRR6) Somatotropin precursor (Growth hormone)| Length = 216 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = +1 Query: 199 VLWSTRLLGVGWPGVGSGNPGAPFQKLFAGVVLVRDHLDE 318 VL + LL + WP P P LFA VL HL + Sbjct: 9 VLLAFTLLCLPWPQEAGAFPAMPLSSLFANAVLRAQHLHQ 48
>SOMA_STRCA (Q9PWG3) Somatotropin precursor (Growth hormone)| Length = 217 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = +1 Query: 220 LGVGWPGVGSGNPGAPFQKLFAGVVLVRDHL 312 LG+ WP + P P LFA VL HL Sbjct: 17 LGLQWPKEAATFPAMPLSNLFANAVLRAQHL 47
>SOMA_ANAPL (P11228) Somatotropin precursor (Growth hormone)| Length = 216 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = +1 Query: 220 LGVGWPGVGSGNPGAPFQKLFAGVVLVRDHL 312 LG+ WP + P P LFA VL HL Sbjct: 17 LGLQWPQEAATFPAMPLSNLFANAVLRAQHL 47
>VP87_NPVOP (P17930) Capsid protein p87| Length = 624 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -2 Query: 251 PLPTPGHPTPSRRVDQSTPGHQ*H**PEQQPRRPS 147 P TP + TP+++ Q TP P QQP +P+ Sbjct: 275 PPQTPAYATPAQQPSQPTPAQT----PAQQPSQPT 305
>YM92_CAEEL (P34531) Hypothetical protein M01A8.2 in chromosome III| Length = 937 Score = 27.7 bits (60), Expect = 7.6 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -2 Query: 248 LPTPGHPTPSRRVDQST-PGHQ*H**PEQQPRRPSNNVNSLPLLVCYVVSFVPITVVTCE 72 LP P P PS R+ +S P Q P Q R+P +V S + V S PI + T + Sbjct: 92 LPKPPPPNPSNRLSRSALPALQLR-NPLTQERKPEEDVMSTSVYVS--SSTKPIAIPTKQ 148 Query: 71 LRP 63 RP Sbjct: 149 CRP 151
>SOMA_MOUSE (P06880) Somatotropin precursor (Growth hormone)| Length = 216 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +1 Query: 202 LWSTRLLGVGWPGVGSGNPGAPFQKLFAGVVLVRDHLDE 318 L + LL + WP S P P LF+ VL HL + Sbjct: 10 LLTVSLLCLLWPQEASAFPAMPLSSLFSNAVLRAQHLHQ 48
>SOMA_CANFA (P33711) Somatotropin precursor (Growth hormone)| Length = 216 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = +1 Query: 199 VLWSTRLLGVGWPGVGSGNPGAPFQKLFAGVVLVRDHLDE 318 VL + LL + WP P P LFA VL HL + Sbjct: 9 VLLAFALLCLPWPQEVGAFPAMPLSSLFANAVLRAQHLHQ 48
>SOMA_AILME (Q8HYE5) Somatotropin precursor (Growth hormone)| Length = 216 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = +1 Query: 199 VLWSTRLLGVGWPGVGSGNPGAPFQKLFAGVVLVRDHLDE 318 VL + LL + WP P P LFA VL HL + Sbjct: 9 VLLAFALLCLPWPQEVGAFPAMPLSSLFANAVLRAQHLHQ 48
>LIPS_HUMAN (Q05469) Hormone-sensitive lipase (EC 3.1.1.79) (HSL)| Length = 1076 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = -2 Query: 251 PLPTPGHPTPSRRVDQSTPGHQ*H**PEQQPRRPSNNVN 135 P P PG P P+++ +STP Q +++P P+ + + Sbjct: 139 PGPGPGEPPPAQQEAESTPAAQAKPGAKREPSAPTESTS 177
>SOMA_SPAEH (O70615) Somatotropin precursor (Growth hormone)| Length = 216 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = +1 Query: 217 LLGVGWPGVGSGNPGAPFQKLFAGVVLVRDHLDE 318 LL + WP P P LFA VL HL + Sbjct: 15 LLCLPWPQEAGAFPAMPLSNLFANAVLRAQHLHQ 48
>SOMA_MUSVI (P19795) Somatotropin precursor (Growth hormone)| Length = 216 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = +1 Query: 217 LLGVGWPGVGSGNPGAPFQKLFAGVVLVRDHLDE 318 LL + WP P P LFA VL HL + Sbjct: 15 LLSLPWPQEVGAFPAMPLSSLFANAVLRAQHLHQ 48
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 27.3 bits (59), Expect = 9.9 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +3 Query: 15 ISHNLRSIGRMEEHRGWPQLTSHYCNR 95 +S +L +G + HR WP L+ H R Sbjct: 3347 LSSHLEFVGILARHRNWPSLSMHVLPR 3373 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,274,484 Number of Sequences: 219361 Number of extensions: 760535 Number of successful extensions: 2861 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2674 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2855 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
