ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
2ref|XM_469360.1| Oryza sativa (japonica cultivar-group), mRNA 86 1e-13
3dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 2e-11
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
6gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome... 78 2e-11
7gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genom... 76 1e-10
8gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genom... 76 1e-10
9gb|AY109108.1| Zea mays PCO116815 mRNA sequence 66 9e-08
10gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence 58 2e-05
11dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
12gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-05
13dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
14gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-05
15ref|NM_197253.1| Oryza sativa (japonica cultivar-group) putative... 54 4e-04
16gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 54 4e-04
17gb|AY112223.1| Zea mays CL3071_1 mRNA sequence 50 0.005
18gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Can... 46 0.086
19gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 geno... 44 0.34
20ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING fin... 44 0.34
21gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2,... 42 1.3
22emb|AL353771.8| Human DNA sequence from clone RP4-677H15 on chro... 42 1.3
23dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
24dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
25dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
26emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on ch... 42 1.3
27gb|AC119205.8| Mus musculus chromosome 5, clone RP24-188M1, comp... 40 5.3
28gb|AC116896.7| Mus musculus chromosome 8, clone RP24-531D19, com... 40 5.3
29gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, comp... 40 5.3
30gb|AC139349.4| Mus musculus BAC clone RP24-318A14 from chromosom... 40 5.3
31ref|XM_543770.2| PREDICTED: Canis familiaris similar to solute c... 40 5.3
32gb|AC127294.4| Mus musculus BAC clone RP23-386L1 from chromosome... 40 5.3
33gb|AC073530.18| Homo sapiens 12 BAC RP11-123O10 (Roswell Park Ca... 40 5.3
34gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosom... 40 5.3
35emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, comp... 40 5.3
36gb|AC162800.2| Mus musculus BAC clone RP24-173D2 from chromosome... 40 5.3
37emb|AL590627.25| Human DNA sequence from clone RP13-467E5 on chr... 40 5.3
38emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chr... 40 5.3
39emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chro... 40 5.3
40emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chro... 40 5.3
41gb|AC093298.3| Homo sapiens chromosome 5 clone RP11-543L14, comp... 40 5.3
42gb|AC010319.10| Homo sapiens chromosome 19 clone CTD-2521M24, co... 40 5.3
43gb|AC008946.7| Homo sapiens chromosome 19 clone CTD-2325M2, comp... 40 5.3
44gb|AC016819.8| Homo sapiens chromosome 10 clone RP11-258D21, com... 40 5.3
45gb|AC023282.8| Homo sapiens chromosome 10 clone RP11-257O17, com... 40 5.3
46gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, comple... 40 5.3
47ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment ... 40 5.3
48gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswel... 40 5.3
49gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, comp... 40 5.3
50gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosom... 40 5.3
51gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, co... 40 5.3
52gb|AC080075.7| Homo sapiens BAC clone RP11-363J17 from 2, comple... 40 5.3
53gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Canc... 40 5.3
54gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, comp... 40 5.3
55ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothe... 40 5.3
56gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA 40 5.3
57emb|AL359951.4|CNS05TF3 Human chromosome 14 DNA sequence BAC R-1... 40 5.3
58emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-3... 40 5.3
59gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete... 40 5.3
60emb|CT572999.10| Mouse DNA sequence from clone RP23-6C18 on chro... 40 5.3
61gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71... 40 5.3
62dbj|AK116643.1| Ciona intestinalis cDNA, clone:ciad036l23, full ... 40 5.3
63gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.40... 40 5.3
64emb|AL627083.18| Mouse DNA sequence from clone RP23-378E2 on chr... 40 5.3
65gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachm... 40 5.3
66gb|AC158938.13| Mus musculus chromosome 3, clone RP23-304F19, co... 40 5.3
67emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chro... 40 5.3
68gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park C... 40 5.3 
>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full
            insert sequence
          Length = 4411

 Score =  101 bits (51), Expect = 2e-18
 Identities = 108/127 (85%)
 Strand = Plus / Minus

                                                                        
Query: 261  taaccggacgcttccattttttgagacagggcatgctgtaacttttggatttcatccctc 320
            |||||||| ||||||||||| || || |||||||| || | |||||| ||||| || |||
Sbjct: 4098 taaccggaagcttccattttctgtgatagggcatgttgcagcttttgaatttcttctctc 4039

                                                                        
Query: 321  tttttccttagcttttcgagctccacttccgcatttagagccccttgaagctgaaggtat 380
            ||||||||||||||||| ||||| ||||| ||||| ||||| ||||| || || ||||||
Sbjct: 4038 tttttccttagcttttcaagctcaacttctgcattgagagctccttggagttggaggtat 3979

                   
Query: 381  acggata 387
            || ||||
Sbjct: 3978 acagata 3972
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>ref|XM_469360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3534

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 103/123 (83%)
 Strand = Plus / Minus

                                                                        
Query: 260  gtaaccggacgcttccattttttgagacagggcatgctgtaacttttggatttcatccct 319
            |||||| || ||||||||||| || ||||| || || || | |||||| ||||| || ||
Sbjct: 3042 gtaaccagaagcttccattttctgtgacagtgcgtgttggagcttttgaatttcttctct 2983

                                                                        
Query: 320  ctttttccttagcttttcgagctccacttccgcatttagagccccttgaagctgaaggta 379
            ||||||||| |||||||| ||||| ||||| ||||| ||||| ||||| || ||||||||
Sbjct: 2982 ctttttcctcagcttttcaagctcaacttctgcattgagagctccttggagttgaaggta 2923

               
Query: 380  tac 382
            |||
Sbjct: 2922 tac 2920
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>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full
            insert sequence
          Length = 3587

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 103/123 (83%)
 Strand = Plus / Minus

                                                                        
Query: 260  gtaaccggacgcttccattttttgagacagggcatgctgtaacttttggatttcatccct 319
            |||||| || ||||||||||| || ||||| || || || | |||||| ||||| || ||
Sbjct: 3254 gtaaccagaagcttccattttctgtgacagtgcgtgttggagcttttgaatttcttctct 3195

                                                                        
Query: 320  ctttttccttagcttttcgagctccacttccgcatttagagccccttgaagctgaaggta 379
            ||||||||| |||||||| ||||| ||||| ||||| ||||| ||||| || ||||||||
Sbjct: 3194 ctttttcctcagcttttcaagctcaacttctgcattgagagctccttggagttgaaggta 3135

               
Query: 380  tac 382
            |||
Sbjct: 3134 tac 3132
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                          
Query: 301    acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
              ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 651915 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 651856

                                         
Query: 361    ccccttgaagctgaaggtatacggata 387
              | ||||| || || |||||||| ||||
Sbjct: 651855 ctccttggagttggaggtatacagata 651829



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                            
Query: 301      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
                ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 27542546 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 27542487

                                      
Query: 361      ccccttgaagctgaaggtatac 382
                | ||||| || |||||||||||
Sbjct: 27542486 ctccttggagttgaaggtatac 27542465



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                            
Query: 301      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
                ||||||||||| |||| ||||| ||||||||||||||  ||||  | || |||||||  |
Sbjct: 12395975 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 12396034

                                   
Query: 361      ccccttgaagctgaaggta 379
                | |||||||||| ||||||
Sbjct: 12396035 ctccttgaagcttaaggta 12396053
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                          
Query: 301    acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
              ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 651913 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 651854

                                         
Query: 361    ccccttgaagctgaaggtatacggata 387
              | ||||| || || |||||||| ||||
Sbjct: 651853 ctccttggagttggaggtatacagata 651827



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                            
Query: 301      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
                ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 27633869 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 27633810

                                      
Query: 361      ccccttgaagctgaaggtatac 382
                | ||||| || |||||||||||
Sbjct: 27633809 ctccttggagttgaaggtatac 27633788



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                            
Query: 301      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
                ||||||||||| |||| ||||| ||||||||||||||  ||||  | || |||||||  |
Sbjct: 12392738 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 12392797

                                   
Query: 361      ccccttgaagctgaaggta 379
                | |||||||||| ||||||
Sbjct: 12392798 ctccttgaagcttaaggta 12392816
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>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0005F16, complete sequence
          Length = 160053

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                         
Query: 301   acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
             ||||||| ||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct: 37796 acttttgaatttcttctctctttttccttagcttttcaagctcaacttctgcattgagag 37737

                                        
Query: 361   ccccttgaagctgaaggtatacggata 387
             | ||||| || || |||||||| ||||
Sbjct: 37736 ctccttggagttggaggtatacagata 37710
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>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete
             sequence
          Length = 27470

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                         
Query: 301   acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
             ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 20228 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 20287

                                   
Query: 361   ccccttgaagctgaaggtatac 382
             | ||||| || |||||||||||
Sbjct: 20288 ctccttggagttgaaggtatac 20309
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>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence,
            complete sequence
          Length = 123406

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                        
Query: 301  acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
            ||||||| ||||| || ||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct: 7968 acttttgaatttcttctctctttttcctcagcttttcaagctcaacttctgcattgagag 8027

                                  
Query: 361  ccccttgaagctgaaggtatac 382
            | ||||| || |||||||||||
Sbjct: 8028 ctccttggagttgaaggtatac 8049
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>gb|AY109108.1| Zea mays PCO116815 mRNA sequence
          Length = 1041

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                       
Query: 164 tttcttctcagcctcaccgatgacccgcagttgctcaaaaaaggcggggagcttcctcat 223
           |||||||||||| |||| |||||||   |||||||| || || |||| ||||||||||||
Sbjct: 796 tttcttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttcctcat 737

                    
Query: 224 gtcctcctc 232
           |||||||||
Sbjct: 736 gtcctcctc 728
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>gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence
          Length = 1244

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                       
Query: 164 tttcttctcagcctcaccgatgacccgcagttgctcaaaaaaggcggggagcttcctcat 223
           |||||||||||| |||| |||||||   ||||| || || || ||||||||||| |||||
Sbjct: 948 tttcttctcagcttcactgatgacctctagttgttccaacaaagcggggagctttctcat 889

                    
Query: 224 gtcctcctc 232
           |||||||||
Sbjct: 888 gtcctcctc 880
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>dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full
            insert sequence
          Length = 3639

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                        
Query: 291  gcatgctgtaacttttggatttcatccctctttttccttagcttttcgagctccacttcc 350
            ||||| |||| |||||||||| |||| ||||| ||||||||||||||  ||||  | || 
Sbjct: 3384 gcatggtgtagcttttggattccatctctcttcttccttagcttttcacgctcagcctct 3325

                                         
Query: 351  gcatttagagccccttgaagctgaaggta 379
            |||||||  || |||||||||| ||||||
Sbjct: 3324 gcatttatggctccttgaagcttaaggta 3296
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>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05
              map S21174S, complete sequence
          Length = 178867

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                          
Query: 301    acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
              ||||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  |||||||
Sbjct: 141536 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 141477

                                                  
Query: 361    ccccttgaagctgaaggtatacggataggtctttgt 396
              | ||| | ||||| |||||||||||||| |||||||
Sbjct: 141476 ctcctcgtagctggaggtatacggatagatctttgt 141441
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                            
Query: 301      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
                ||||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  |||||||
Sbjct: 18843800 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 18843741

                                                    
Query: 361      ccccttgaagctgaaggtatacggataggtctttgt 396
                | ||| | ||||| |||||||||||||| |||||||
Sbjct: 18843740 ctcctcgtagctggaggtatacggatagatctttgt 18843705
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                            
Query: 301      acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
                ||||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  |||||||
Sbjct: 18855054 acttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagag 18854995

                                                    
Query: 361      ccccttgaagctgaaggtatacggataggtctttgt 396
                | ||| | ||||| |||||||||||||| |||||||
Sbjct: 18854994 ctcctcgtagctggaggtatacggatagatctttgt 18854959
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>ref|NM_197253.1| Oryza sativa (japonica cultivar-group) putative valyl tRNA synthetase
            (OSJNBa0062C05.27), mRNA
          Length = 3171

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                        
Query: 302  cttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagagc 361
            |||||| || ||||| | ||||||||||||||| ||  ||||  |||| |  ||||||||
Sbjct: 3015 cttttgaatctcatctcgctttttccttagcttctcacgctcagcttcagtgtttagagc 2956

                                               
Query: 362  cccttgaagctgaaggtatacggataggtctttgt 396
             ||| | ||||| |||||||||||||| |||||||
Sbjct: 2955 tcctcgtagctggaggtatacggatagatctttgt 2921
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>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                         
Query: 301   acttttggatttcatccctctttttccttagcttttcgagctccacttccgcatttagag 360
             ||||||||||| |||| ||||| ||||||||||||||  ||||  | || |||||||  |
Sbjct: 54993 acttttggattccatctctcttcttccttagcttttcacgctcagcctctgcatttatgg 55052

                                
Query: 361   ccccttgaagctgaaggta 379
             | |||||||||| ||||||
Sbjct: 55053 ctccttgaagcttaaggta 55071
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>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence
          Length = 1082

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 164 tttcttctcagcctcaccgatgacccgcagttgctcaaaaaaggcggggagcttcctcat 223
           |||||||||||| |||| |||||||   ||||| || || || |||| |||||| |||||
Sbjct: 451 tttcttctcagcttcactgatgacctctagttgttccaacaaagcggtgagctttctcat 510

                    
Query: 224 gtcctcctc 232
           |||||||||
Sbjct: 511 gtcctcctc 519
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>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186915

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 28     tttgaattttctataaatgtgacatca 54
              |||||| ||||||||||||||||||||
Sbjct: 132214 tttgaaatttctataaatgtgacatca 132188
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>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete
             sequence
          Length = 121915

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 26    catttgaattttctataaatgt 47
             ||||||||||||||||||||||
Sbjct: 75708 catttgaattttctataaatgt 75687
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>ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING finger protein 31 (Zinc
            in-between-RING-finger ubiquitin-associated domain
            protein) (LOC480259), mRNA
          Length = 3490

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 175  cctcaccgatgacccgcagttgctca 200
            ||||||||||||| ||||||||||||
Sbjct: 2442 cctcaccgatgacacgcagttgctca 2467
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>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence
          Length = 81567

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    atttgaattttctataaatgt 47
             |||||||||||||||||||||
Sbjct: 74176 atttgaattttctataaatgt 74196
to top
>emb|AL353771.8| Human DNA sequence from clone RP4-677H15 on chromosome 1p31.3-32.3
             Contains gene FLJ20331, two novel genes, the SFRS11 gene
             for arginine/serine-rich 11 splicing factor and the 3' end
             of gene DKFZP566D1346, complete sequence
          Length = 131612

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   cttccattttttgagacaggg 291
             |||||||||||||||||||||
Sbjct: 46199 cttccattttttgagacaggg 46179
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 81      tatcaacttccaaacaaaaat 101
               |||||||||||||||||||||
Sbjct: 9829802 tatcaacttccaaacaaaaat 9829822
to top
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456E06
          Length = 164353

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 81     tatcaacttccaaacaaaaat 101
              |||||||||||||||||||||
Sbjct: 120044 tatcaacttccaaacaaaaat 120064
to top
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 81    tatcaacttccaaacaaaaat 101
             |||||||||||||||||||||
Sbjct: 26437 tatcaacttccaaacaaaaat 26457
to top
>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete
              sequence
          Length = 168158

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 43     aatgtgacatcaccaccatcc 63
              |||||||||||||||||||||
Sbjct: 140982 aatgtgacatcaccaccatcc 141002
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>gb|AC119205.8| Mus musculus chromosome 5, clone RP24-188M1, complete sequence
          Length = 170550

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    ttccattttttgagacaggg 291
              ||||||||||||||||||||
Sbjct: 132074 ttccattttttgagacaggg 132093
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>gb|AC116896.7| Mus musculus chromosome 8, clone RP24-531D19, complete sequence
          Length = 163072

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 270    gcttccattttttgagacagggca 293
              ||||||| ||||||||||||||||
Sbjct: 116617 gcttccactttttgagacagggca 116640
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>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence
          Length = 203728

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    ccatttgaattttctataaa 44
             ||||||||||||||||||||
Sbjct: 23208 ccatttgaattttctataaa 23189
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>gb|AC139349.4| Mus musculus BAC clone RP24-318A14 from chromosome 8, complete sequence
          Length = 199464

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   ttccattttttgagacaggg 291
             ||||||||||||||||||||
Sbjct: 87905 ttccattttttgagacaggg 87924
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>ref|XM_543770.2| PREDICTED: Canis familiaris similar to solute carrier family 7
            (cationic amino acid transporter, y+ system), member 3
            (LOC486643), mRNA
          Length = 3279

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 293  atgctgtaacttttggattt 312
            ||||||||||||||||||||
Sbjct: 1571 atgctgtaacttttggattt 1590
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>gb|AC127294.4| Mus musculus BAC clone RP23-386L1 from chromosome 3, complete sequence
          Length = 212556

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 97     aaaatgccagtaggtcccaataaa 120
              ||||||||||||| ||||||||||
Sbjct: 119237 aaaatgccagtagatcccaataaa 119260
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>gb|AC073530.18| Homo sapiens 12 BAC RP11-123O10 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 156390

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 272  ttccattttttgagacaggg 291
            ||||||||||||||||||||
Sbjct: 8386 ttccattttttgagacaggg 8405
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>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete
             sequence
          Length = 156282

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    aacttccaaacaaaaatgcc 104
             ||||||||||||||||||||
Sbjct: 16747 aacttccaaacaaaaatgcc 16766
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>emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, complete sequence
          Length = 15122

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   aacttccaaacaaaaatgcc 104
            ||||||||||||||||||||
Sbjct: 3649 aacttccaaacaaaaatgcc 3668
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>gb|AC162800.2| Mus musculus BAC clone RP24-173D2 from chromosome 17, complete sequence
          Length = 199202

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 355   ttagagccccttgaagctgaaggt 378
             ||||| ||||||||||||||||||
Sbjct: 47915 ttagatccccttgaagctgaaggt 47938
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>emb|AL590627.25| Human DNA sequence from clone RP13-467E5 on chromosome 9 Contains a
              pseudogene similar to part of SET translocation (myeloid
              leukemia-associated) (SET), the 5' end of the gene for
              euchromatic histone methyltransferase 1 (FLJ12879,
              KIAA1876) (Eu-HMTase1) and two CpG islands, complete
              sequence
          Length = 166141

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    ttccattttttgagacaggg 291
              ||||||||||||||||||||
Sbjct: 150450 ttccattttttgagacaggg 150469
to top
>emb|AL590080.25| Human DNA sequence from clone RP11-469M1 on chromosome 10 Contains the
             HHEX gene for hematopoietically expressed homeobox, the 5'
             end of the gene for SEC15 (S. cerevisiae)-like (SEC15L), a
             eukaryotic translation initiation factor 2 subunit 2
             (eIF-2-beta) pseudogene and four CpG islands, complete
             sequence
          Length = 190144

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   agagccccttgaagctgaag 376
             ||||||||||||||||||||
Sbjct: 76717 agagccccttgaagctgaag 76736
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>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the
             3' end of the Col27a1 gene for procollagen type XXVII
             alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1,
             2 and 3, an orosomucoid pseudogene, the gene for a novel
             protein similar to human AT-hook protein AKNA, gene
             4933437N03Rik, the Whrn gene for whirlin and two CpG
             islands, complete sequence
          Length = 214370

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   gagcttcctcatgtcctcct 231
             ||||||||||||||||||||
Sbjct: 31754 gagcttcctcatgtcctcct 31735
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>emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chromosome 4 Contains a
             component of oligomeric golgi complex 1 (Cog5) pseudogene
             and part of the Ptprd gene for receptor type protein
             tyrosine phosphatase D, complete sequence
          Length = 198523

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   attttttgagacagggcatg 295
             ||||||||||||||||||||
Sbjct: 88444 attttttgagacagggcatg 88463
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>gb|AC093298.3| Homo sapiens chromosome 5 clone RP11-543L14, complete sequence
          Length = 198687

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    cctctttttccttagctttt 336
              ||||||||||||||||||||
Sbjct: 147791 cctctttttccttagctttt 147772
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>gb|AC010319.10| Homo sapiens chromosome 19 clone CTD-2521M24, complete sequence
          Length = 141370

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   ttccattttttgagacaggg 291
             ||||||||||||||||||||
Sbjct: 51391 ttccattttttgagacaggg 51410
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>gb|AC008946.7| Homo sapiens chromosome 19 clone CTD-2325M2, complete sequence
          Length = 109445

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   ttccattttttgagacaggg 291
             ||||||||||||||||||||
Sbjct: 56557 ttccattttttgagacaggg 56576
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>gb|AC016819.8| Homo sapiens chromosome 10 clone RP11-258D21, complete sequence
          Length = 134050

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   ttccattttttgagacaggg 291
             ||||||||||||||||||||
Sbjct: 82072 ttccattttttgagacaggg 82053
to top
>gb|AC023282.8| Homo sapiens chromosome 10 clone RP11-257O17, complete sequence
          Length = 168319

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    ttttttgagacagggcatgc 296
              ||||||||||||||||||||
Sbjct: 148775 ttttttgagacagggcatgc 148794
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>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence
          Length = 55775

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   gcttcctcatgtcctcctct 233
             ||||||||||||||||||||
Sbjct: 23507 gcttcctcatgtcctcctct 23526
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>ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment protein CG6625-RA
            (Snap), mRNA
          Length = 2069

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   gaattttctataaatgtgac 50
            ||||||||||||||||||||
Sbjct: 1762 gaattttctataaatgtgac 1743
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>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 185918

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     gaattttctataaatgtgac 50
              ||||||||||||||||||||
Sbjct: 106242 gaattttctataaatgtgac 106223
to top
>gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, complete sequence
          Length = 168521

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   attttctataaatgtgacat 52
            ||||||||||||||||||||
Sbjct: 1961 attttctataaatgtgacat 1980
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>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete sequence
          Length = 195483

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     aacttccaaacaaaaatgcc 104
              ||||||||||||||||||||
Sbjct: 160602 aacttccaaacaaaaatgcc 160621
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>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence
          Length = 143516

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     tgaattttctataaatgtga 49
              ||||||||||||||||||||
Sbjct: 121095 tgaattttctataaatgtga 121076
to top
>gb|AC080075.7| Homo sapiens BAC clone RP11-363J17 from 2, complete sequence
          Length = 99370

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 272  ttccattttttgagacaggg 291
            ||||||||||||||||||||
Sbjct: 3657 ttccattttttgagacaggg 3638
to top
>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172507

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     catttgaattttctataaat 45
              ||||||||||||||||||||
Sbjct: 161099 catttgaattttctataaat 161080
to top
>gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, complete sequence
          Length = 155354

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    attttctataaatgtgacat 52
             ||||||||||||||||||||
Sbjct: 23774 attttctataaatgtgacat 23793
to top
>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein
            6430402L03 (LOC302412), mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 215  cttcctcatgtcctcctctt 234
            ||||||||||||||||||||
Sbjct: 1005 cttcctcatgtcctcctctt 986
to top
>gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA
          Length = 2054

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   gaattttctataaatgtgac 50
            ||||||||||||||||||||
Sbjct: 1730 gaattttctataaatgtgac 1711
to top
>emb|AL359951.4|CNS05TF3 Human chromosome 14 DNA sequence BAC R-196A3 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176202

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   ttccattttttgagacaggg 291
             ||||||||||||||||||||
Sbjct: 66593 ttccattttttgagacaggg 66612
to top
>emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-318A9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175584

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    atgtgacatcaccaccatcc 63
             ||||||||||||||||||||
Sbjct: 71007 atgtgacatcaccaccatcc 71026
to top
>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence
          Length = 229073

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    ctgtaacttttggatttcat 315
              ||||||||||||||||||||
Sbjct: 161157 ctgtaacttttggatttcat 161138
to top
>emb|CT572999.10| Mouse DNA sequence from clone RP23-6C18 on chromosome 12, complete
            sequence
          Length = 176044

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 272  ttccattttttgagacaggg 291
            ||||||||||||||||||||
Sbjct: 2448 ttccattttttgagacaggg 2467
to top
>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete
              sequence
          Length = 299903

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     gaattttctataaatgtgac 50
              ||||||||||||||||||||
Sbjct: 288396 gaattttctataaatgtgac 288377
to top
>dbj|AK116643.1| Ciona intestinalis cDNA, clone:ciad036l23, full insert sequence
          Length = 3646

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  ggggagcttcctcatgtcct 228
            ||||||||||||||||||||
Sbjct: 1697 ggggagcttcctcatgtcct 1716
to top
>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence
          Length = 198582

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    tgaattttctataaatgtga 49
             ||||||||||||||||||||
Sbjct: 63377 tgaattttctataaatgtga 63358
to top
>emb|AL627083.18| Mouse DNA sequence from clone RP23-378E2 on chromosome 4, complete
              sequence
          Length = 219379

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    ttccattttttgagacaggg 291
              ||||||||||||||||||||
Sbjct: 140988 ttccattttttgagacaggg 141007
to top
>gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachment protein mRNA, complete
            cds
          Length = 2038

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   gaattttctataaatgtgac 50
            ||||||||||||||||||||
Sbjct: 1718 gaattttctataaatgtgac 1699
to top
>gb|AC158938.13| Mus musculus chromosome 3, clone RP23-304F19, complete sequence
          Length = 232469

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    ttccattttttgagacaggg 291
              ||||||||||||||||||||
Sbjct: 141045 ttccattttttgagacaggg 141064
to top
>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete
              sequence
          Length = 216415

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     tttgaattttctataaatgt 47
              ||||||||||||||||||||
Sbjct: 104442 tttgaattttctataaatgt 104461
to top
>gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 171887

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   cttttggatttcatccctct 321
             ||||||||||||||||||||
Sbjct: 59407 cttttggatttcatccctct 59388


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,966,288
Number of Sequences: 3902068
Number of extensions: 4966288
Number of successful extensions: 225591
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 225126
Number of HSP's gapped (non-prelim): 461
length of query: 396
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 374
effective length of database: 17,147,199,772
effective search space: 6413052714728
effective search space used: 6413052714728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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