ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TA2R8_PONPY (Q645U8) Taste receptor type 2 member 8 (T2R8) 30 2.2
2ALMS1_MOUSE (Q8K4E0) Alstrom syndrome protein 1 homolog 28 8.4
3TILS_NITEU (Q82VP4) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 28 8.4

>TA2R8_PONPY (Q645U8) Taste receptor type 2 member 8 (T2R8)|
          Length = 309

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 120 MYQIKQSLVRITNNTKKKKLDVTINHAGSYLQPEGHPFSVRLLANKLRR 266
           +Y I   LV  +    K KL +      + L P GH F + +L NKLR+
Sbjct: 246 LYYITSLLVTFSYLMTKYKLAMAFGEIVAILYPSGHSFILIILNNKLRQ 294



to top

>ALMS1_MOUSE (Q8K4E0) Alstrom syndrome protein 1 homolog|
          Length = 3251

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 75   LNEQIA-SAMYDSSQIMYQIKQSLVRITNNTKKKKLDVTINHAGSYLQPEGHPFS 236
            L+ Q+A S++ DS  I   +K    + +     ++  V I+H   Y +PEG P S
Sbjct: 2256 LDLQVAQSSLPDSKTIFQDLKTKPPQNSQIVTSRQTQVNISHLEGYSKPEGTPVS 2310



to top

>TILS_NITEU (Q82VP4) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 458

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 117 IMYQIKQSLVRITNNTKKKKLDVTINHAGSYLQPEGH-PFSVRLLANKLRRGLQE 278
           + Y + Q L+R+ N+TK +++   +N+    +QP+ H  F V  L  +  RGL E
Sbjct: 273 LRYLLAQRLIRLPNSTKLEEILRQLNN----IQPDNHFRFIVDTLEIRCHRGLIE 323


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,751,012
Number of Sequences: 219361
Number of extensions: 1281742
Number of successful extensions: 2728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2728
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top