>gb|AC112250.4| Homo sapiens BAC clone RP11-710E1 from 4, complete sequence
          Length = 79475

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 82    aacaaatagcatcagctatgt 102
             |||||||||||||||||||||
Sbjct: 27265 aacaaatagcatcagctatgt 27285

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 55/65 (84%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                           
Query: 234     tctgttaggttacttgctaataagctgcgacgggg-tctgcaagaaccctcagttgcata 292
               |||||||| ||||| |||| ||| ||||||| ||| |||| || || |||||||||||||
Sbjct: 8791075 tctgttagattactcgctactaaactgcgactgggctctgaaataaacctcagttgcata 8791016

                    
Query: 293     atata 297
                ||||
Sbjct: 8791015 gtata 8791011

>dbj|AP002817.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0699D11
          Length = 140825

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 55/65 (84%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                          
Query: 234    tctgttaggttacttgctaataagctgcgacgggg-tctgcaagaaccctcagttgcata 292
              |||||||| ||||| |||| ||| ||||||| ||| |||| || || |||||||||||||
Sbjct: 108532 tctgttagattactcgctactaaactgcgactgggctctgaaataaacctcagttgcata 108473

                   
Query: 293    atata 297
               ||||
Sbjct: 108472 gtata 108468

>dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0469E09
          Length = 146081

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 55/65 (84%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                         
Query: 234   tctgttaggttacttgctaataagctgcgacgggg-tctgcaagaaccctcagttgcata 292
             |||||||| ||||| |||| ||| ||||||| ||| |||| || || |||||||||||||
Sbjct: 27103 tctgttagattactcgctactaaactgcgactgggctctgaaataaacctcagttgcata 27044

                  
Query: 293   atata 297
              ||||
Sbjct: 27043 gtata 27039

>dbj|AK102361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091I10, full
            insert sequence
          Length = 2132

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 55/65 (84%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 234  tctgttaggttacttgctaataagctgcgacgggg-tctgcaagaaccctcagttgcata 292
            |||||||| ||||| |||| ||| ||||||| ||| |||| || || |||||||||||||
Sbjct: 1986 tctgttagattactcgctactaaactgcgactgggctctgaaataaacctcagttgcata 1927

                 
Query: 293  atata 297
             ||||
Sbjct: 1926 gtata 1922

>gb|AC146967.3| Bos taurus clone RP42-279M12, complete sequence
          Length = 186611

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   acagcaaatatctttcagat 420
             ||||||||||||||||||||
Sbjct: 10235 acagcaaatatctttcagat 10216

>gb|AC165975.4| Mus musculus BAC clone RP23-3L23 from chromosome 5, complete sequence
          Length = 259091

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    gaaactgttattattattct 317
              ||||||||||||||||||||
Sbjct: 147907 gaaactgttattattattct 147926

>gb|AE014850.1| Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete
             sequence
          Length = 250713

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    aatatttcttgtaaacataa 38
             ||||||||||||||||||||
Sbjct: 90713 aatatttcttgtaaacataa 90694

>gb|AC132579.2| Mus musculus BAC clone RP24-480N2 from chromosome 6, complete
            sequence
          Length = 138264

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 61   ttctgtgatgcattttaaac 80
            ||||||||||||||||||||
Sbjct: 9461 ttctgtgatgcattttaaac 9480

>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 401     acagcaaatatctttcagat 420
               ||||||||||||||||||||
Sbjct: 1896295 acagcaaatatctttcagat 1896276

>emb|CR354398.17| Zebrafish DNA sequence from clone CH211-142C14 in linkage group 7,
              complete sequence
          Length = 180088

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    tatagaaactgttattatta 313
              ||||||||||||||||||||
Sbjct: 162481 tatagaaactgttattatta 162462

>emb|AL603757.5| Human DNA sequence from clone RP11-519O9 on chromosome 6, complete
             sequence
          Length = 110520

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     tcaaacagacataatatttc 26
             ||||||||||||||||||||
Sbjct: 30527 tcaaacagacataatatttc 30508

>emb|AL133413.5| Human DNA sequence from clone RP11-54K22 on chromosome 9q34.11-34.2
             Contains a NADH dehydrogenase 3, mitochondrial (MTND3)
             pseudogene, complete sequence
          Length = 157790

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   agcaaatatctttcagatca 422
             ||||||||||||||||||||
Sbjct: 91871 agcaaatatctttcagatca 91890

>emb|AL672211.7| Zebrafish DNA sequence from clone BUSM1-6A2 in linkage group 11
             Contains a novel gene similar to OGFR, the fez gene for
             forebrain embryonic zinc-finger protein, part of a novel
             gene for a protein similar to Ca2+ dependent activator and
             four CpG islands, complete sequence
          Length = 80828

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   aaattatgtatcagatcaaa 134
             ||||||||||||||||||||
Sbjct: 67531 aaattatgtatcagatcaaa 67512

>emb|AJ277029.2|PMA277029 Physeter macrocephalus mitochondrial genome
          Length = 16428

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    tccccacattaccatcaacg 58
             ||||||||||||||||||||
Sbjct: 13107 tccccacattaccatcaacg 13126

>emb|BX927279.15| Zebrafish DNA sequence from clone CH211-101N16 in linkage group 13,
              complete sequence
          Length = 182020

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    aaactgttattattattcta 318
              ||||||||||||||||||||
Sbjct: 111848 aaactgttattattattcta 111829

>gb|AC163199.8| Mus musculus 6 BAC RP23-333F8 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 233589

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    ttctgtgatgcattttaaac 80
             ||||||||||||||||||||
Sbjct: 18071 ttctgtgatgcattttaaac 18052

>emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 in linkage group 7 Contains
              three CpG islands, complete sequence
          Length = 110786

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 294    tatagaaactgttattatta 313
              ||||||||||||||||||||
Sbjct: 106431 tatagaaactgttattatta 106450

>gb|AC079385.18| Homo sapiens 12q BAC RP11-482D24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 181609

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 336   atcactcagagtgcccaactctga 359
             |||||| |||||||||||||||||
Sbjct: 43514 atcactgagagtgcccaactctga 43491

>emb|BX649300.4| Zebrafish DNA sequence from clone CH211-195I16 in linkage group 23,
             complete sequence
          Length = 202963

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    taatatttcttgtaaacata 37
             ||||||||||||||||||||
Sbjct: 10063 taatatttcttgtaaacata 10044

>gb|AC008872.6| Homo sapiens chromosome 5 clone CTD-2198D21, complete sequence
          Length = 128703

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 398  tcaacagcaaatatctttca 417
            ||||||||||||||||||||
Sbjct: 3939 tcaacagcaaatatctttca 3958

>emb|BX276115.11| Zebrafish DNA sequence from clone DKEY-274M17 in linkage group 11,
              complete sequence
          Length = 175216

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    aaattatgtatcagatcaaa 134
              ||||||||||||||||||||
Sbjct: 149512 aaattatgtatcagatcaaa 149531

>gb|AC084547.1|CBRG30K19 Caenorhabditis briggsae cosmid G30K19, complete sequence
          Length = 41736

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   tgttattattattctatcct 322
             ||||||||||||||||||||
Sbjct: 15253 tgttattattattctatcct 15272

>gb|AF463520.1| Homo sapiens lung cancer cell deletion region
          Length = 7671

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 398  tcaacagcaaatatctttca 417
            ||||||||||||||||||||
Sbjct: 1008 tcaacagcaaatatctttca 1027

>gb|AC156367.3| Bos taurus clone RP42-394P24, complete sequence
          Length = 78774

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   acagcaaatatctttcagat 420
             ||||||||||||||||||||
Sbjct: 70311 acagcaaatatctttcagat 70292

>emb|CR456623.14| Zebrafish DNA sequence from clone DKEY-100N10 in linkage group 12,
             complete sequence
          Length = 167475

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    gaacaaatagcatcagctat 100
             ||||||||||||||||||||
Sbjct: 57480 gaacaaatagcatcagctat 57461


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,350,318
Number of Sequences: 3902068
Number of extensions: 5350318
Number of successful extensions: 85189
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 85127
Number of HSP's gapped (non-prelim): 83
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)