Clone Name | rbastl03c01 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | RA14_ORYSA (Q01882) Seed allergenic protein RA14 precursor | 30 | 2.6 | 2 | RA05_ORYSA (Q01881) Seed allergenic protein RA5 precursor | 30 | 3.3 | 3 | RAG2_ORYSA (Q01885) Seed allergenic protein RAG2 precursor | 30 | 3.3 | 4 | MCLN1_MOUSE (Q99J21) Mucolipin-1 (Mucolipidin) | 30 | 3.3 | 5 | RAG1_ORYSA (Q01884) Seed allergenic protein RAG1 precursor (Frag... | 30 | 4.4 | 6 | RA17_ORYSA (Q01883) Seed allergenic protein RA17 precursor | 30 | 4.4 |
---|
>RA14_ORYSA (Q01882) Seed allergenic protein RA14 precursor| Length = 165 Score = 30.4 bits (67), Expect = 2.6 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 383 QCLTDCCRVMVASDDVFCRC 324 Q DCCR + A DD +CRC Sbjct: 75 QLAQDCCRELAAVDDSWCRC 94
>RA05_ORYSA (Q01881) Seed allergenic protein RA5 precursor| Length = 157 Score = 30.0 bits (66), Expect = 3.3 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 383 QCLTDCCRVMVASDDVFCRC 324 Q DCCR + A DD +CRC Sbjct: 72 QVRRDCCRQLAAVDDSWCRC 91
>RAG2_ORYSA (Q01885) Seed allergenic protein RAG2 precursor| Length = 166 Score = 30.0 bits (66), Expect = 3.3 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 383 QCLTDCCRVMVASDDVFCRC 324 Q DCCR + A DD +CRC Sbjct: 76 QLRQDCCRQLAAVDDSWCRC 95
>MCLN1_MOUSE (Q99J21) Mucolipin-1 (Mucolipidin)| Length = 580 Score = 30.0 bits (66), Expect = 3.3 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 15/125 (12%) Frame = +3 Query: 153 SAGWKNVLIKFH*ATLFKSNYLDMVFITCHSQL-IHNLQTTVRR--------TIILFLDN 305 SA +KN+ +KFH ++ +T H QL NLQ+ + +I++ DN Sbjct: 215 SASYKNLTLKFH----------KLINVTIHFQLKTINLQSLINNEIPDCYTFSILITFDN 264 Query: 306 R----RVLLQASTK-YIIGCNHHSTT-ISQTLYKLDTHYQVTVGCTLLYQRPSYFILFLT 467 + R+ ++ TK +I C H S + ++L V + C+L FL Sbjct: 265 KAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFRLLFDVVVILTCSL---------SFLL 315 Query: 468 CARKL 482 CAR L Sbjct: 316 CARSL 320
>RAG1_ORYSA (Q01884) Seed allergenic protein RAG1 precursor (Fragment)| Length = 95 Score = 29.6 bits (65), Expect = 4.4 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 383 QCLTDCCRVMVASDDVFCRC 324 Q DCCR + A DD +CRC Sbjct: 72 QVWQDCCRQLAAVDDGWCRC 91
>RA17_ORYSA (Q01883) Seed allergenic protein RA17 precursor| Length = 162 Score = 29.6 bits (65), Expect = 4.4 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 383 QCLTDCCRVMVASDDVFCRC 324 Q DCCR + A DD +CRC Sbjct: 72 QVWQDCCRQLAAVDDGWCRC 91 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,588,538 Number of Sequences: 219361 Number of extensions: 1301491 Number of successful extensions: 2801 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 2685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2796 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)