ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RA14_ORYSA (Q01882) Seed allergenic protein RA14 precursor 30 2.6
2RA05_ORYSA (Q01881) Seed allergenic protein RA5 precursor 30 3.3
3RAG2_ORYSA (Q01885) Seed allergenic protein RAG2 precursor 30 3.3
4MCLN1_MOUSE (Q99J21) Mucolipin-1 (Mucolipidin) 30 3.3
5RAG1_ORYSA (Q01884) Seed allergenic protein RAG1 precursor (Frag... 30 4.4
6RA17_ORYSA (Q01883) Seed allergenic protein RA17 precursor 30 4.4

>RA14_ORYSA (Q01882) Seed allergenic protein RA14 precursor|
          Length = 165

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 383 QCLTDCCRVMVASDDVFCRC 324
           Q   DCCR + A DD +CRC
Sbjct: 75  QLAQDCCRELAAVDDSWCRC 94



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>RA05_ORYSA (Q01881) Seed allergenic protein RA5 precursor|
          Length = 157

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 383 QCLTDCCRVMVASDDVFCRC 324
           Q   DCCR + A DD +CRC
Sbjct: 72  QVRRDCCRQLAAVDDSWCRC 91



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>RAG2_ORYSA (Q01885) Seed allergenic protein RAG2 precursor|
          Length = 166

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 383 QCLTDCCRVMVASDDVFCRC 324
           Q   DCCR + A DD +CRC
Sbjct: 76  QLRQDCCRQLAAVDDSWCRC 95



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>MCLN1_MOUSE (Q99J21) Mucolipin-1 (Mucolipidin)|
          Length = 580

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
 Frame = +3

Query: 153 SAGWKNVLIKFH*ATLFKSNYLDMVFITCHSQL-IHNLQTTVRR--------TIILFLDN 305
           SA +KN+ +KFH           ++ +T H QL   NLQ+ +          +I++  DN
Sbjct: 215 SASYKNLTLKFH----------KLINVTIHFQLKTINLQSLINNEIPDCYTFSILITFDN 264

Query: 306 R----RVLLQASTK-YIIGCNHHSTT-ISQTLYKLDTHYQVTVGCTLLYQRPSYFILFLT 467
           +    R+ ++  TK +I  C H S +      ++L     V + C+L          FL 
Sbjct: 265 KAHSGRIPIRLETKTHIQECKHPSVSRHGDNSFRLLFDVVVILTCSL---------SFLL 315

Query: 468 CARKL 482
           CAR L
Sbjct: 316 CARSL 320



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>RAG1_ORYSA (Q01884) Seed allergenic protein RAG1 precursor (Fragment)|
          Length = 95

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 383 QCLTDCCRVMVASDDVFCRC 324
           Q   DCCR + A DD +CRC
Sbjct: 72  QVWQDCCRQLAAVDDGWCRC 91



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>RA17_ORYSA (Q01883) Seed allergenic protein RA17 precursor|
          Length = 162

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 383 QCLTDCCRVMVASDDVFCRC 324
           Q   DCCR + A DD +CRC
Sbjct: 72  QVWQDCCRQLAAVDDGWCRC 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,588,538
Number of Sequences: 219361
Number of extensions: 1301491
Number of successful extensions: 2801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2796
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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