ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03c01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC101727.8| Mus musculus chromosome 1, clone RP23-327G3, complete sequence Length = 196065 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 tcaaattccactgagcaacct 198 ||||||||||||||||||||| Sbjct: 148662 tcaaattccactgagcaacct 148682
>gb|AC146373.5| Pan troglodytes BAC clone RP43-60G24 from 7, complete sequence Length = 151517 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 tgcataaaaataaatacattt 54 ||||||||||||||||||||| Sbjct: 117149 tgcataaaaataaatacattt 117129
>gb|AC148831.2| Pan troglodytes BAC clone CH251-134F2 from chromosome 7, complete sequence Length = 163831 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 tgcataaaaataaatacattt 54 ||||||||||||||||||||| Sbjct: 129865 tgcataaaaataaatacattt 129845 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 tgcataaaaataaatacattt 54 ||||||||||||||||||||| Sbjct: 33966 tgcataaaaataaatacattt 33986
>gb|AC112154.4| Mus musculus BAC clone RP24-98L2 from chromosome 1, complete sequence Length = 200202 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 tcaaattccactgagcaacct 198 ||||||||||||||||||||| Sbjct: 190788 tcaaattccactgagcaacct 190808
>gb|AC006455.2| Homo sapiens PAC clone RP5-905H7 from 7, complete sequence Length = 139384 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 tgcataaaaataaatacattt 54 ||||||||||||||||||||| Sbjct: 98437 tgcataaaaataaatacattt 98457
>gb|AC134618.2| Homo sapiens BAC clone RP11-1241A4 from 7, complete sequence Length = 213481 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 tgcataaaaataaatacattt 54 ||||||||||||||||||||| Sbjct: 93993 tgcataaaaataaatacattt 93973
>emb|AL034345.3|HS207H1 Human DNA sequence from clone RP1-207H1 on chromosome 6p21.1-21.31 Contains part of the DNAH8 gene for dynein axonemal heavy polypeptide 8, the 3' part of a novel gene and a 40S ribosomal protein S2 (RPS2) pseudogene, complete sequence Length = 84756 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 atttaagtcaaattaccttga 220 ||||||||||||||||||||| Sbjct: 24862 atttaagtcaaattaccttga 24882
>gb|AC182735.3| Pan troglodytes BAC clone CH251-257K2 from chromosome 7, complete sequence Length = 156146 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 tgcataaaaataaatacattt 54 ||||||||||||||||||||| Sbjct: 19294 tgcataaaaataaatacattt 19274
>gb|AC022402.5| Homo sapiens chromosome 06 clone RP11-70I3, complete sequence Length = 164270 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 atttaagtcaaattaccttga 220 ||||||||||||||||||||| Sbjct: 130697 atttaagtcaaattaccttga 130717
>gb|AC073188.10| Homo sapiens BAC clone RP11-73B2 from 7, complete sequence Length = 65128 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 tgcataaaaataaatacattt 54 ||||||||||||||||||||| Sbjct: 56719 tgcataaaaataaatacattt 56699
>gb|AC148298.3| Pan troglodytes BAC clone CH251-136E8 from chromosome 7, complete sequence Length = 168496 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 tgcataaaaataaatacattt 54 ||||||||||||||||||||| Sbjct: 48192 tgcataaaaataaatacattt 48172
>ref|XM_683072.1| PREDICTED: Danio rerio similar to Protein phosphatase 2C delta isoform (PP2C-delta) (p53-induced protein phosphatase 1) (Protein phosphatase magnesium-dependent 1 delta) (LOC564986), mRNA Length = 2522 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 cataaaaataaatacatttgc 56 ||||||||||||||||||||| Sbjct: 2240 cataaaaataaatacatttgc 2220
>ref|NM_134408.1| Rattus norvegicus latrophilin 2 (Lphn2), mRNA Length = 5602 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 38 taaaaataaatacatttgcgtccaa 62 |||||||||||||||||| |||||| Sbjct: 5189 taaaaataaatacatttgtgtccaa 5213
>gb|AC008264.10|AC008264 Homo sapiens chromosome 7 clone RP11-180C16, complete sequence Length = 162694 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 attgttgagttttccttgttg 35 ||||||||||||||||||||| Sbjct: 33893 attgttgagttttccttgttg 33873
>gb|AC134619.2| Homo sapiens BAC clone RP11-1367K15 from 7, complete sequence Length = 225116 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 tgcataaaaataaatacattt 54 ||||||||||||||||||||| Sbjct: 123992 tgcataaaaataaatacattt 123972 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 tgcataaaaataaatacattt 54 ||||||||||||||||||||| Sbjct: 28327 tgcataaaaataaatacattt 28347
>gb|AF063102.1|AF063102 Rattus norvegicus calcium-independent alpha-latrotoxin receptor homolog 2 (CIRL-2) mRNA, complete cds Length = 5602 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 38 taaaaataaatacatttgcgtccaa 62 |||||||||||||||||| |||||| Sbjct: 5189 taaaaataaatacatttgtgtccaa 5213
>emb|AL928954.9| Zebrafish DNA sequence from clone CH211-127D4 in linkage group 5, complete sequence Length = 222888 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 cataaaaataaatacatttgc 56 ||||||||||||||||||||| Sbjct: 179366 cataaaaataaatacatttgc 179386
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 gcataaaaataaatacattt 54 |||||||||||||||||||| Sbjct: 1318548 gcataaaaataaatacattt 1318529
>gb|AC139571.2| Mus musculus BAC clone RP24-73K9 from chromosome 15, complete sequence Length = 210089 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 aggtcacagtgggctgcaca 425 |||||||||||||||||||| Sbjct: 154585 aggtcacagtgggctgcaca 154604
>emb|AL121935.17|HSBA517H2 Human DNA sequence from clone RP11-517H2 on chromosome 6 Contains the CCR6 gene for chemokine (C-C motif) receptor 6 (chemokine receptor-like3 chemokine (C-C) receptor 6 G protein-coupled receptor 29 seven-transmembrane receptor, lymphocyte, 22 (BN-1, CKR6, DCR2, CKRL3, DRY-6, GPR29, CKR-L3, CMKBR6, GPRCY4, STRL22, GPR-CY4)), the GPR31 gene for G protein-coupled receptor 31 and a novel gene similar to TCP10 (T-complex 10 (mouse)), complete sequence Length = 101230 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 aagtcaaattaccttgatat 223 |||||||||||||||||||| Sbjct: 58896 aagtcaaattaccttgatat 58877
>emb|AL139077.2|CJ11168X4 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 4/6 Length = 282183 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 gcataaaaataaatacattt 54 |||||||||||||||||||| Sbjct: 257845 gcataaaaataaatacattt 257826
>emb|AJ550579.1|BTH550579 Buddleja thyrsoides ITS1, 5.8S rRNA gene and ITS2, specimen voucher Brescia 12/484 Length = 752 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 gcattgttgagttttccttg 32 |||||||||||||||||||| Sbjct: 226 gcattgttgagttttccttg 207
>emb|AL845351.6| Zebrafish DNA sequence from clone DKEYP-44A9 in linkage group 20, complete sequence Length = 160701 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 aaaaataaatacatttgcgt 58 |||||||||||||||||||| Sbjct: 94731 aaaaataaatacatttgcgt 94712
>gb|AC118003.21| Mus musculus chromosome 5, clone RP23-146G20, complete sequence Length = 176116 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 cactgtacaaactggacaca 398 |||||||||||||||||||| Sbjct: 71951 cactgtacaaactggacaca 71970
>emb|CR589879.7| Zebrafish DNA sequence from clone DKEYP-85D1 in linkage group 13, complete sequence Length = 201310 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ataaaaataaatacatttgc 56 |||||||||||||||||||| Sbjct: 72306 ataaaaataaatacatttgc 72325
>gb|AC109584.2| Homo sapiens chromosome 3 clone RP11-674P14, complete sequence Length = 179199 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cataacttacagacaacagt 274 |||||||||||||||||||| Sbjct: 74654 cataacttacagacaacagt 74635
>gb|AC109351.3| Homo sapiens BAC clone RP11-417M17 from 4, complete sequence Length = 133157 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gcataaaaataaatacattt 54 |||||||||||||||||||| Sbjct: 132061 gcataaaaataaatacattt 132080
>gb|AC012101.7| Homo sapiens chromosome 18, clone RP11-396D4, complete sequence Length = 168965 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tgcattgttgagttttcctt 31 |||||||||||||||||||| Sbjct: 144726 tgcattgttgagttttcctt 144745
>gb|AC097510.3| Homo sapiens BAC clone RP11-390C19 from 4, complete sequence Length = 177467 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gcataaaaataaatacattt 54 |||||||||||||||||||| Sbjct: 904 gcataaaaataaatacattt 923
>gb|AC092588.2| Homo sapiens BAC clone RP11-44A12 from 2, complete sequence Length = 140401 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 attaatacataacttacaga 267 |||||||||||||||||||| Sbjct: 21820 attaatacataacttacaga 21839
>gb|AC090812.5| Homo sapiens chromosome 18, clone RP11-59J7, complete sequence Length = 176873 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tgcattgttgagttttcctt 31 |||||||||||||||||||| Sbjct: 150068 tgcattgttgagttttcctt 150049
>gb|AC092797.2| Homo sapiens chromosome 3 clone RP11-452E8, complete sequence Length = 200278 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cataacttacagacaacagt 274 |||||||||||||||||||| Sbjct: 26531 cataacttacagacaacagt 26512
>gb|AC007431.8| Homo sapiens chromosome 17, clone RP11-118E18, complete sequence Length = 166518 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ggaccatcatcctcttctta 299 |||||||||||||||||||| Sbjct: 28597 ggaccatcatcctcttctta 28616
>gb|AC022723.9| Homo sapiens chromosome 18, clone RP11-237L16, complete sequence Length = 121014 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tgcattgttgagttttcctt 31 |||||||||||||||||||| Sbjct: 37793 tgcattgttgagttttcctt 37812
>gb|AC069356.6| Homo sapiens chromosome 18, clone RP11-575O17, complete sequence Length = 161480 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 ataacagaagggttttactc 320 |||||||||||||||||||| Sbjct: 67103 ataacagaagggttttactc 67122
>gb|AC163352.2| Mus musculus BAC clone RP23-98P11 from chromosome 16, complete sequence Length = 190996 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtacatttcctgcattgttg 21 |||||||||||||||||||| Sbjct: 57346 gtacatttcctgcattgttg 57327
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 cttcatattatttttaactt 468 |||||||||||||||||||| Sbjct: 4729554 cttcatattatttttaactt 4729535
>emb|AL772133.30| Zebrafish DNA sequence from clone CH211-121J5 in linkage group 9, complete sequence Length = 180967 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gcataaaaataaatacattt 54 |||||||||||||||||||| Sbjct: 102680 gcataaaaataaatacattt 102699
>gb|AC113306.6| Mus musculus chromosome 7, clone RP23-434A16, complete sequence Length = 200177 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 aaactggacacacactatca 406 |||||||||||||||||||| Sbjct: 82910 aaactggacacacactatca 82929
>emb|AL772154.4| Zebrafish DNA sequence from clone CH211-101N13 in linkage group 13, complete sequence Length = 173048 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ataaaaataaatacatttgc 56 |||||||||||||||||||| Sbjct: 152185 ataaaaataaatacatttgc 152204
>gb|AC153891.6| Mus musculus 10 BAC RP23-415J15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198332 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 gcataaaaataaatacattt 54 |||||||||||||||||||| Sbjct: 41844 gcataaaaataaatacattt 41825
>gb|AC004057.1|AC004057 Homo sapiens chromosome 4 clone B240N9 map 4q25, complete sequence Length = 152798 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 atcaaattccactgagcaac 196 |||||||||||||||||||| Sbjct: 9240 atcaaattccactgagcaac 9259
>gb|AC132466.4| Mus musculus BAC clone RP23-68N22 from 16, complete sequence Length = 144237 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gtacatttcctgcattgttg 21 |||||||||||||||||||| Sbjct: 118873 gtacatttcctgcattgttg 118854
>gb|AC168272.8| Mus musculus 10 BAC RP24-261C21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 189395 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gcataaaaataaatacattt 54 |||||||||||||||||||| Sbjct: 111506 gcataaaaataaatacattt 111525 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,709,616 Number of Sequences: 3902068 Number of extensions: 5709616 Number of successful extensions: 122177 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122037 Number of HSP's gapped (non-prelim): 140 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
