ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYFB_MYCTU (P94985) Phenylalanyl-tRNA synthetase beta chain (EC ... 28 7.7
2SYFB_MYCBO (Q7VEV3) Phenylalanyl-tRNA synthetase beta chain (EC ... 28 7.7

>SYFB_MYCTU (P94985) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 831

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 96  DTSDTQSSFCSFDAACLSR----IYLTSK*TAAAQNTVDPTASLRKLNKIRGLLAD 251
           D++D       +D A +SR    ++L S+     + TVDP  S+  L++   LLAD
Sbjct: 337 DSTDVLLEAAIWDPAAVSRTQRRLHLPSEAARRYERTVDPAISVAALDRCARLLAD 392



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>SYFB_MYCBO (Q7VEV3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 831

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 96  DTSDTQSSFCSFDAACLSR----IYLTSK*TAAAQNTVDPTASLRKLNKIRGLLAD 251
           D++D       +D A +SR    ++L S+     + TVDP  S+  L++   LLAD
Sbjct: 337 DSTDVLLEAAIWDPAAVSRTQRRLHLPSEAARRYERTVDPAISVAALDRCARLLAD 392


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,198,980
Number of Sequences: 219361
Number of extensions: 1129268
Number of successful extensions: 2428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2428
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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