ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1104K_THEPA (P15711) 104 kDa microneme-rhoptry antigen precursor ... 32 0.91
2HEMK_RICCN (Q92G13) Bifunctional methyltransferase [Includes: He... 28 7.7
3HEMK_RICFE (Q4UJU4) Bifunctional methyltransferase [Includes: He... 28 7.7

>104K_THEPA (P15711) 104 kDa microneme-rhoptry antigen precursor (p104)|
          Length = 924

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +3

Query: 126 PGPGEQH-----PSLCKLC*GPETPSHPSDKWDNKKRRGCKTTT 242
           PGP  +H     P+L K   GP+ P HP D  + +K +  +T +
Sbjct: 553 PGPAREHKPSKIPTLSKKPSGPKDPKHPRDPKEPRKSKSPRTAS 596



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>HEMK_RICCN (Q92G13) Bifunctional methyltransferase [Includes: HemK protein|
           homolog (EC 2.1.1.-) (M.RcoHemKP); tRNA
           (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)
           (tRNA(m7G46)-methyltransferase)]
          Length = 524

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 271 NPNSLSMAPLLYLPSAFNALPCYSHQNISRWLIFVAN 381
           NPN+L +   +YL    N L     QNI+ +L+F  N
Sbjct: 369 NPNALFIGIEVYLNGVANVLKLAGEQNITNFLLFPNN 405



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>HEMK_RICFE (Q4UJU4) Bifunctional methyltransferase [Includes: HemK protein|
           homolog (EC 2.1.1.-); tRNA
           (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)
           (tRNA(m7G46)-methyltransferase)]
          Length = 527

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 271 NPNSLSMAPLLYLPSAFNALPCYSHQNISRWLIFVAN 381
           NP++L +   +YL    N L   S QNI+ +L+F  N
Sbjct: 372 NPDALFIGVEVYLNGVANVLKLASEQNITNFLLFPNN 408


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,097,867
Number of Sequences: 219361
Number of extensions: 1285873
Number of successful extensions: 3351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3351
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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