Clone Information

BLAST Search Result

Clone Name	rbastl03b10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	BRE1_SCHPO (O74563) Ubiquitin-protein ligase bre1 (EC 6.3.2.-)	49	4e-06
2	BRE1_DROME (Q9VRP9) Ubiquitin-protein ligase Bre1 (EC 6.3.2.-) (...	44	2e-04
3	BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) ...	43	3e-04
4	BRE1A_MOUSE (Q5DTM8) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	43	3e-04
5	BRE1_CRYNE (Q5KBI0) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	43	3e-04
6	BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	43	3e-04
7	BRE1_CAEEL (P34537) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) ...	43	3e-04
8	BRE1_NEUCR (Q7S304) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-)	43	3e-04
9	BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	43	3e-04
10	BRE1_GIBZE (Q4I7N9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	42	5e-04
11	BRE1B_PONPY (Q5RAU7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	41	0.001
12	BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	41	0.001
13	BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	41	0.001
14	BRE1_CANAL (Q5A4X0) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	41	0.001
15	BRE1B_RAT (Q8CJB9) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (...	40	0.002
16	BRE1B_MOUSE (Q3U319) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	40	0.002
17	BRE1_DEBHA (Q6BWW6) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	38	0.009
18	BRE1_CANGA (Q6FWF3) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	38	0.012
19	BRE1_ASHGO (Q757D9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	37	0.016
20	BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (...	37	0.020
21	BRE1_KLULA (Q6CWM4) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	35	0.059
22	BRE1_YARLI (Q6CF78) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	35	0.077
23	RAD18_YARLI (Q6CHI1) Postreplication repair ubiquitin-protein li...	32	0.65
24	RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger...	30	1.9
25	RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-)...	30	1.9
26	RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger p...	30	1.9
27	RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger...	30	1.9
28	RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger...	30	1.9
29	RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-)...	30	1.9
30	RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2....	30	1.9
31	RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2....	30	1.9
32	RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	29	5.5
33	RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	29	5.5
34	RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	29	5.5
35	RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	29	5.5
36	RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (...	29	5.5
37	RAG1_ONCMY (Q91187) V(D)J recombination-activating protein 1 (RA...	29	5.5
38	TRUB_TROWT (Q820Y5) tRNA pseudouridine synthase B (EC 5.4.99.-) ...	28	9.4
39	RO52_MOUSE (Q62191) 52 kDa Ro protein (Sjoegren syndrome type A ...	28	9.4
40	TRUB_TROW8 (Q820Z5) tRNA pseudouridine synthase B (EC 5.4.99.-) ...	28	9.4

>BRE1_SCHPO (O74563) Ubiquitin-protein ligase bre1 (EC 6.3.2.-)|
          Length = 680

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 20/34 (58%), Positives = 24/34 (70%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
           FC  CIQK +  RQRRCP C   FGA+DV PI++
Sbjct: 647 FCYQCIQKRIETRQRRCPICGRGFGASDVIPIHL 680

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>BRE1_DROME (Q9VRP9) Ubiquitin-protein ligase Bre1 (EC 6.3.2.-) (dBre1)|
          Length = 1044

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -3

Query: 431  FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
            FC DC++     RQR+CP C  +FGAND   +Y+
Sbjct: 1010 FCYDCLRTRYETRQRKCPKCNCAFGANDYHRLYL 1043

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>BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger|
           protein rfp-1)
          Length = 828

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
           FC  CI+ +   RQR+CP C  +FGAND   I+I
Sbjct: 795 FCETCIKTMYDTRQRKCPKCNSNFGANDFHRIFI 828

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>BRE1A_MOUSE (Q5DTM8) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
            finger protein 20)
          Length = 973

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = -3

Query: 431  FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
            FC +C++     RQR+CP C  +FGAND   IYI
Sbjct: 939  FCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYI 972

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>BRE1_CRYNE (Q5KBI0) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 820

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 13/33 (39%), Positives = 24/33 (72%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIY 333
           FC  C+++ + +RQR+CP+C L+F   D++ +Y
Sbjct: 786 FCKQCLEQRIASRQRKCPACGLAFAKEDIQTLY 818

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>BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
            finger protein 20)
          Length = 984

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = -3

Query: 431  FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
            FC +C++     RQR+CP C  +FGAND   IYI
Sbjct: 950  FCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYI 983

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>BRE1_CAEEL (P34537) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger|
           protein rfp-1)
          Length = 837

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
           FC  CI+ +   RQR+CP C  +FGAND   I+I
Sbjct: 804 FCETCIKTMYDTRQRKCPKCNSNFGANDFHRIFI 837

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>BRE1_NEUCR (Q7S304) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-)|
          Length = 707

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
           FCN+C+   L NR R+CPSC  +F  +D  P ++
Sbjct: 674 FCNECVDNRLANRMRKCPSCNKAFDRSDAMPAHL 707

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>BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
            finger protein 20)
          Length = 975

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = -3

Query: 431  FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
            FC +C++     RQR+CP C  +FGAND   IYI
Sbjct: 941  FCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYI 974

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>BRE1_GIBZE (Q4I7N9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 703

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIY 333
           FCN C+   + NR R+CP+C+ +F   DV P++
Sbjct: 670 FCNQCVDDRISNRMRKCPTCSRAFDKMDVMPVH 702

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>BRE1B_PONPY (Q5RAU7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40)
          Length = 1001

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -3

Query: 431  FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
            FC +C++     RQR+CP C  +FGA+D   IYI
Sbjct: 967  FCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000

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>BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40)
          Length = 1001

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -3

Query: 431  FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
            FC +C++     RQR+CP C  +FGA+D   IYI
Sbjct: 967  FCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000

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>BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40) (95 kDa retinoblastoma-associated
            protein) (RBP95)
          Length = 1001

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -3

Query: 431  FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
            FC +C++     RQR+CP C  +FGA+D   IYI
Sbjct: 967  FCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000

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>BRE1_CANAL (Q5A4X0) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 681

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
           FC+ C Q+ L  R RRCPSC   F AND+  I++
Sbjct: 648 FCSKCTQERLAARLRRCPSCNRGFSANDLLSIHL 681

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>BRE1B_RAT (Q8CJB9) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40) (Syntaxin-1-interacting RING finger
            protein) (Protein staring)
          Length = 1002

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -3

Query: 431  FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
            FC +C++     RQR+CP C  +FGA+D   +YI
Sbjct: 968  FCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYI 1001

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>BRE1B_MOUSE (Q3U319) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40)
          Length = 1001

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -3

Query: 431  FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
            FC +C++     RQR+CP C  +FGA+D   +YI
Sbjct: 967  FCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYI 1000

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>BRE1_DEBHA (Q6BWW6) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 691

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
           FC  C Q+ L  R RRCP+C   F AND+  I++
Sbjct: 658 FCLGCTQERLAARLRRCPTCNKGFSANDLLSIHL 691

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>BRE1_CANGA (Q6FWF3) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 693

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
           FC DC ++ L  R R+CP+C   F +ND+  +++
Sbjct: 660 FCEDCCKERLAARMRKCPTCNKPFSSNDLLMVHL 693

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>BRE1_ASHGO (Q757D9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 643

 Score = 37.4 bits (85), Expect = 0.016
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
           FC DC ++ L  R R+CP+C   F +ND+  +++
Sbjct: 610 FCADCCKERLAARMRKCPTCNKGFSSNDLLVVHL 643

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>BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (Brefeldin|
           A-sensitivity protein 1)
          Length = 700

 Score = 37.0 bits (84), Expect = 0.020
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
           FC +C ++ L  R R+CP+C  +F +ND+  +++
Sbjct: 667 FCENCCKERLAARMRKCPTCNKAFSSNDLLTVHL 700

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>BRE1_KLULA (Q6CWM4) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 663

 Score = 35.4 bits (80), Expect = 0.059
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
           FC+ C ++ L  R R+CP+C   F +ND+  I++
Sbjct: 630 FCDVCCKERLAARMRKCPTCNKPFSSNDLLSIHL 663

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>BRE1_YARLI (Q6CF78) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 700

 Score = 35.0 bits (79), Expect = 0.077
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKPIYI 330
           FC+ C Q  L  R R+CP+C   F  ND+  +++
Sbjct: 667 FCHQCAQDRLDARLRKCPNCNKPFSQNDLLTVHL 700

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>RAD18_YARLI (Q6CHI1) Postreplication repair ubiquitin-protein ligase E3 RAD18|
           (EC 6.-.-.-)
          Length = 344

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC+ CIQ+ L N  +RCP+C
Sbjct: 47  FCSLCIQRYLTNTSQRCPTC 66

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>RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 377

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC+DCI   LR+  + CP+C
Sbjct: 39  FCSDCIVTALRSGNKECPTC 58

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>RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (dRING1)|
           (dRING protein) (Sex comb extra protein)
          Length = 435

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC+DCI   LR+  + CP+C
Sbjct: 66  FCSDCIVTALRSGNKECPTC 85

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>RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 406

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC+DCI   LR+  + CP+C
Sbjct: 68  FCSDCIVTALRSGNKECPTC 87

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>RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger protein 1)|
           (Transcription repressor Ring1A)
          Length = 406

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC+DCI   LR+  + CP+C
Sbjct: 68  FCSDCIVTALRSGNKECPTC 87

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>RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 406

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC+DCI   LR+  + CP+C
Sbjct: 68  FCSDCIVTALRSGNKECPTC 87

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>RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (RING finger|
           protein 1) (RING1a)
          Length = 406

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC+DCI   LR+  + CP+C
Sbjct: 68  FCSDCIVTALRSGNKECPTC 87

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>RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2.-) (RING finger|
           protein 2-B) (RING finger protein 1B-B) (RING1b-B)
          Length = 343

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC+DCI   LR+  + CP+C
Sbjct: 67  FCSDCIVTALRSGNKECPTC 86

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>RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2.-) (RING finger|
           protein 2-A) (RING finger protein 1B-A) (RING1b-A)
          Length = 344

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC+DCI   LR+  + CP+C
Sbjct: 68  FCSDCIVTALRSGNKECPTC 87

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>RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC DCI   LR+  + CP+C
Sbjct: 71  FCADCIITALRSGNKECPTC 90

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>RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC DCI   LR+  + CP+C
Sbjct: 71  FCADCIITALRSGNKECPTC 90

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>RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b) (RING
           finger protein BAP-1) (DinG protein)
           (Huntingtin-interacting protein 2-interacting protein 3)
           (HIP2-interacting protein 3)
          Length = 336

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC DCI   LR+  + CP+C
Sbjct: 71  FCADCIITALRSGNKECPTC 90

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>RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC DCI   LR+  + CP+C
Sbjct: 71  FCADCIITALRSGNKECPTC 90

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>RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 308

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSC 372
           FC DCI   LR+  + CP+C
Sbjct: 71  FCADCIITALRSGNKECPTC 90

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>RAG1_ONCMY (Q91187) V(D)J recombination-activating protein 1 (RAG-1)|
          Length = 1073

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDV 345
           FC  CI K + +    CP+C L  G  D+
Sbjct: 329 FCRSCIAKYIYSLGPHCPACTLPCGPADL 357

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>TRUB_TROWT (Q820Y5) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 377

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 352 LAPKLNAQEGHLRWRFLSNF 411
           + PKLNA+E  + W+FL +F
Sbjct: 153 IIPKLNAREVRVHWKFLGDF 172

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>RO52_MOUSE (Q62191) 52 kDa Ro protein (Sjoegren syndrome type A antigen)|
           (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen
           Ro/SS-A) (Tripartite motif protein 21)
          Length = 470

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 431 FCNDCIQKLLRNRQRRCPSCALSFGANDVKP 339
           FC +CI ++ +N    CP C   F   +++P
Sbjct: 39  FCKECIFEVGKNGGSSCPECRQQFLLRNLRP 69

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>TRUB_TROW8 (Q820Z5) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 383

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 352 LAPKLNAQEGHLRWRFLSNF 411
           + PKLNA+E  + W+FL +F
Sbjct: 153 IIPKLNAREVRVHWKFLGDF 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,386,204
Number of Sequences: 219361
Number of extensions: 1311448
Number of successful extensions: 3012
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 2913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3009
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result