>gb|AC144591.10| Medicago truncatula clone mth2-5f17, complete sequence
          Length = 128352

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 333   ataaatcggcttcacatcattagccccaaagc 364
             ||||| |||||| |||||||||||||||||||
Sbjct: 84764 ataaaccggcttaacatcattagccccaaagc 84733

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 347      catcattagccccaaagcttaatgcacaggaagggcacc 385
                ||||| |||||| ||||||| || |||||||||||||||
Sbjct: 26583421 catcactagcccaaaagcttgatccacaggaagggcacc 26583459

>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0519E06
          Length = 170634

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 347    catcattagccccaaagcttaatgcacaggaagggcacc 385
              ||||| |||||| ||||||| || |||||||||||||||
Sbjct: 125802 catcactagcccaaaagcttgatccacaggaagggcacc 125840

>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1112_F09
          Length = 139371

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 347   catcattagccccaaagcttaatgcacaggaagggcacc 385
             ||||| |||||| ||||||| || |||||||||||||||
Sbjct: 17582 catcactagcccaaaagcttgatccacaggaagggcacc 17620

>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 347    catcattagccccaaagcttaatgcacaggaagggcacc 385
              ||||| |||||| ||||||| || |||||||||||||||
Sbjct: 292172 catcactagcccaaaagcttgatccacaggaagggcacc 292134

>gb|AC107447.5| Rattus norvegicus 4 BAC CH230-46D21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 133054

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 262   gaacaccaaacaagcagcattt 283
             ||||||||||||||||||||||
Sbjct: 46102 gaacaccaaacaagcagcattt 46123

>emb|X92179.1|STALCDEHY S.tuberosum mRNA for alcohol dehydrogenase
          Length = 1430

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 214  gaaatttggtgagttataagct 235
            ||||||||||||||||||||||
Sbjct: 1176 gaaatttggtgagttataagct 1155

>gb|AC157815.9| Mus musculus chromosome 3, clone RP24-175G5, complete sequence
          Length = 170361

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 267    ccaaacaagcagcatttagtcacttg 292
              ||||||||||||| ||||||||||||
Sbjct: 168151 ccaaacaagcagcttttagtcacttg 168126

>gb|AC141209.11| Mus musculus chromosome 3, clone RP23-199M5, complete sequence
          Length = 192274

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 267  ccaaacaagcagcatttagtcacttg 292
            ||||||||||||| ||||||||||||
Sbjct: 9129 ccaaacaagcagcttttagtcacttg 9104

>gb|AC183324.3| Myotis lucifugus clone CH235-22K20, complete sequence
          Length = 198971

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 259    catgaacaccaaacaagcagcattt 283
              ||||||| |||||||||||||||||
Sbjct: 131823 catgaaccccaaacaagcagcattt 131847

>gb|AC096914.2| Homo sapiens chromosome 3 clone RP11-16E8, complete sequence
          Length = 167978

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 213    agaaatttggtgagttataag 233
              |||||||||||||||||||||
Sbjct: 157957 agaaatttggtgagttataag 157937

>gb|AC092504.3| Homo sapiens chromosome 3 clone RP11-598P2, complete sequence
          Length = 149527

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 213   agaaatttggtgagttataag 233
             |||||||||||||||||||||
Sbjct: 72118 agaaatttggtgagttataag 72098

>gb|AC122937.4| Mus musculus BAC clone RP23-24P3 from chromosome 15, complete sequence
          Length = 196863

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 201   gacctcttttgcagaaatttg 221
             |||||||||||||||||||||
Sbjct: 64856 gacctcttttgcagaaatttg 64876

>gb|AC122011.3| Mus musculus chromosome 10 clone RP24-352E6, complete sequence
          Length = 181468

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 412    tgtatacagtcgttgcagaa 431
              ||||||||||||||||||||
Sbjct: 151745 tgtatacagtcgttgcagaa 151764

>ref|XM_512218.1| PREDICTED: Pan troglodytes LOC455530 (LOC455530), mRNA
          Length = 3285

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 gagcggggagccacacttgc 152
           ||||||||||||||||||||
Sbjct: 978 gagcggggagccacacttgc 997

>gb|AC129581.7| Mus musculus chromosome 9, clone RP24-259A3, complete sequence
          Length = 209607

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    gatcaaaataaatacagtgt 76
             ||||||||||||||||||||
Sbjct: 85784 gatcaaaataaatacagtgt 85765

>gb|AC129336.4| Mus musculus BAC clone RP23-113I7 from chromosome 10, complete sequence
          Length = 215437

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 412   tgtatacagtcgttgcagaa 431
             ||||||||||||||||||||
Sbjct: 60000 tgtatacagtcgttgcagaa 60019

>emb|AL135778.9| Human DNA sequence from clone RP1-119C5 on chromosome 6 Contains the 5'
              end of the BMP6 gene for bone morphogenetic protein 6 and a
              CpG island, complete sequence
          Length = 152786

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 207    ttttgcagaaatttggtgag 226
              ||||||||||||||||||||
Sbjct: 129894 ttttgcagaaatttggtgag 129875

>emb|AL133399.1| Human DNA sequence from clone RP1-305G21 on chromosome 11p13 Contains a
             pseudogene similar to S100C, STSs and GSSs, complete
             sequence
          Length = 82404

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    gatcaaaataaatacagtgt 76
             ||||||||||||||||||||
Sbjct: 63512 gatcaaaataaatacagtgt 63531

>emb|AL845340.11| Mouse DNA sequence from clone RP23-169D3 on chromosome 4 Contains a novel
              gene and a CpG island, complete sequence
          Length = 193243

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    gaacaccaaacaagcagcat 281
              ||||||||||||||||||||
Sbjct: 110448 gaacaccaaacaagcagcat 110467

>gb|AC155934.2| Mus musculus BAC clone RP23-58N8 from chromosome 9, complete sequence
          Length = 198059

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     gatcaaaataaatacagtgt 76
              ||||||||||||||||||||
Sbjct: 167462 gatcaaaataaatacagtgt 167443

>emb|BX005174.12| Zebrafish DNA sequence from clone CH211-134M17 in linkage group 13,
              complete sequence
          Length = 178371

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    tgaacaccaaacaagcagca 280
              ||||||||||||||||||||
Sbjct: 102552 tgaacaccaaacaagcagca 102533

>emb|AL929457.12| Zebrafish DNA sequence from clone CH211-153I8 in linkage group 14,
              complete sequence
          Length = 164299

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 64     ataaatacagtgtatatgca 83
              ||||||||||||||||||||
Sbjct: 111910 ataaatacagtgtatatgca 111891

>gb|AC004156.1|AC004156 Homo sapiens chromosome 19, cosmid R33586, complete sequence
          Length = 41702

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   gagcggggagccacacttgc 152
             ||||||||||||||||||||
Sbjct: 15564 gagcggggagccacacttgc 15545

>emb|BX510330.20| Zebrafish DNA sequence from clone DKEYP-82B3 in linkage group 13,
            complete sequence
          Length = 96887

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 64   ataaatacagtgtatatgca 83
            ||||||||||||||||||||
Sbjct: 8067 ataaatacagtgtatatgca 8048


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,025,632
Number of Sequences: 3902068
Number of extensions: 4025632
Number of successful extensions: 66835
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66781
Number of HSP's gapped (non-prelim): 54
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)