ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03b08 |
|---|---|
| Clone Library Name | barley_pub |
>GPC6A_RAT (Q70VB1) G-protein coupled receptor family C group 6 member A| precursor Length = 928 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +2 Query: 278 NQKPASWTHDTKKLIIL*QKTLETKQMPWNDGIWLLDNVGIIGSTKL 418 N A+WT+DT K T+ET ND +W G+I S +L Sbjct: 378 NYSQATWTYDTTK-------TIETHLFKRNDFLWHYTEPGLIHSIQL 417
>GAG_AVISN (P03342) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30] (Fragment) Length = 313 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +2 Query: 266 YTWMNQKPASWTHDTKKLIIL*QKTLETKQMPWND 370 Y W NQ P+S++ ++I L + T Q W+D Sbjct: 226 YNWKNQNPSSFSQAPDQVISLLESVFYTHQPTWDD 260
>OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703)| Length = 309 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -3 Query: 65 AVIRHGEWYICWMLLATSTVG 3 AV+ G W +CWM+LA+S G Sbjct: 132 AVMTSGGWRVCWMILASSWFG 152
>NU1M_PECMA (Q96186) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 354 Score = 29.6 bits (65), Expect = 3.0 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = -2 Query: 423 FFSFVLPIMPTLSRSQMPSFQGICLVSRVFCQRMMSFLVSC 301 FFSF++ + L RS P ++ L+ ++CQ ++ L+SC Sbjct: 307 FFSFMVVFLIVLCRSSFPRYRYDMLMKLIWCQ-ILPILMSC 346
>BPAEB_MOUSE (Q60824) Bullous pemphigoid antigen 1, isoforms 6/7 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragments) Length = 1678 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +1 Query: 262 SLHMDEPETSFMDT*HQETHHPLTKNPGNQANALERRHLAPRQCWHYRQHKAE 420 S D S DT +E HHP +PGN + L + P W H+ E Sbjct: 900 STTQDHTFASAFDTAGRECHHPAEISPGNSGH-LNLKTRLPLSRWTQEPHQTE 951
>EMRY_ECOLI (P52600) Multidrug resistance protein Y| Length = 512 Score = 29.3 bits (64), Expect = 3.9 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = -2 Query: 120 WSSMLSTLSVCVVIPGG-VCCNSAWGMVYLLDV 25 WS + +C I GG +C N +WG ++L++V Sbjct: 147 WSMTVIIAPICGPILGGYICDNFSWGWIFLINV 179
>BPAEA_MOUSE (Q91ZU8) Bullous pemphigoid antigen 1, isoform 5 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 2611 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +1 Query: 262 SLHMDEPETSFMDT*HQETHHPLTKNPGNQANALERRHLAPRQCWHYRQHKAE 420 S D S DT +E HHP +PGN + L + P W H+ E Sbjct: 1833 STTQDHTFASAFDTAGRECHHPAEISPGNSGH-LNLKTRLPLSRWTQEPHQTE 1884
>HRCA_CHLCV (Q824B0) Heat-inducible transcription repressor hrcA| Length = 386 Score = 28.9 bits (63), Expect = 5.1 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Frame = +1 Query: 1 KPTVDVANNIQQIYHSP---CRITADSTGNNNTHRQC*QHARPVPVHSLGKRELFHTHTK 171 +PT + N + I+ +P C + N T PV +L +E+F T T Sbjct: 278 RPTAFIGNELSDIFRTPNPQCAVITIPYYMNRTPLGAFGVLGPV---NLPYKEIFKTLTI 334 Query: 172 FQTKIDRYSTKFMFLLYDLIWRPSSSHPTIS 264 F KI T+ + RP S PT+S Sbjct: 335 FADKIKASLTQSFYKFKLSFRRPCPSDPTLS 365
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGEWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGEWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGEWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLC----VLLFPVESAVIRHGEWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Fragment) Length = 340 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -2 Query: 180 GLEFCVRVEEFSFSQRVYWYWSSMLSTLSVCVVIP---GGV 67 G FC R + FSF + W S+++ L + + +P GGV Sbjct: 169 GTLFCCRRKFFSFLNWTLFIWGSLITALLLIITLPVLAGGV 209
>SPE1_BRAJU (O82475) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)| Length = 702 Score = 28.5 bits (62), Expect = 6.7 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = -3 Query: 197 EYLSILVWN--FVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRH 51 EY + +V + FVC KS P C+ +GRA H VL+F SA RH Sbjct: 353 EYAAAVVASVRFVCDQKSVKHPVICSESGRAIVSH-HSVLIFEAVSAGKRH 402
>FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1885 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +2 Query: 89 HTDNVDNMLDQYQYTLWEKENSST 160 + DNVD +L+QY+Y L+ + T Sbjct: 1614 NADNVDKLLEQYEYVLYPSRSIQT 1637
>TYDP1_HUMAN (Q9NUW8) Tyrosyl-DNA phosphodiesterase 1 (EC 3.1.4.-) (Tyr-DNA| phosphodiesterase 1) Length = 608 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/69 (21%), Positives = 33/69 (47%) Frame = -3 Query: 317 VSWCHVSMKLVSGSSMCRLMVGWEEEGRQIKSYSRNMNFVEYLSILVWNFVCVWKSSLFP 138 +S C + + G+ ++M+ EEG ++ ++ N+ ++ +W S L+P Sbjct: 248 ISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQ----KTQGIWLSPLYP 303 Query: 137 RECTGTGRA 111 R GT ++ Sbjct: 304 RIADGTHKS 312
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGEWYICW 30 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3150 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3205
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGEWYICW 30 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3153 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3208
>R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7124 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPRECTGTGRACCQHCLCVLLFPVESAVIRHGEWYICW 30 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3096 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3151 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,228,956 Number of Sequences: 219361 Number of extensions: 1549747 Number of successful extensions: 4114 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3947 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4111 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
