Clone Name | rbastl03b07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_719837.1| Plasmodium yoelii yoelii str. 17XNL ubiquitin carboxyl-terminal hydrolase family 2 (PY04608) partial mRNA Length = 3519 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 aaattttaaatctgatttaaa 33 ||||||||||||||||||||| Sbjct: 393 aaattttaaatctgatttaaa 413
>gb|DQ066647.1| Capsicum chinense cultivar PI159234 eIF4E gene, intron I Length = 3577 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 ttattaaccaaacatacccag 256 ||||||||||||||||||||| Sbjct: 1608 ttattaaccaaacatacccag 1588
>gb|BC114062.1| Bos taurus cDNA clone MGC:137539 IMAGE:8161659, complete cds Length = 1626 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 383 tgccgccgctggtgcagccgg 403 ||||||||||||||||||||| Sbjct: 282 tgccgccgctggtgcagccgg 262
>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold Length = 501879 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 aaattttaaatctgatttaaa 33 ||||||||||||||||||||| Sbjct: 225751 aaattttaaatctgatttaaa 225771
>ref|NM_174757.2| Bos taurus aspartate beta-hydroxylase (ASPH), mRNA Length = 2739 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 383 tgccgccgctggtgcagccgg 403 ||||||||||||||||||||| Sbjct: 276 tgccgccgctggtgcagccgg 256
>emb|AL954171.10| Zebrafish DNA sequence from clone CH211-284B7 in linkage group 2, complete sequence Length = 148854 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 ccagcagcaacctagctactc 273 ||||||||||||||||||||| Sbjct: 18903 ccagcagcaacctagctactc 18883
>gb|M91213.1|BOVASBHY Bos taurus aspartyl (asparaginyl) beta hydroxylase mRNA, complete cds Length = 2739 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 383 tgccgccgctggtgcagccgg 403 ||||||||||||||||||||| Sbjct: 276 tgccgccgctggtgcagccgg 256
>ref|XM_464632.1| Oryza sativa (japonica cultivar-group), mRNA Length = 273 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tgccgccgctggtgcagccg 402 |||||||||||||||||||| Sbjct: 216 tgccgccgctggtgcagccg 197
>ref|XM_464631.1| Oryza sativa (japonica cultivar-group), mRNA Length = 273 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tgccgccgctggtgcagccg 402 |||||||||||||||||||| Sbjct: 216 tgccgccgctggtgcagccg 197
>gb|AC133896.7| Mus musculus chromosome 5, clone RP24-529E15, complete sequence Length = 187415 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 acccagccaaattttaaatc 24 |||||||||||||||||||| Sbjct: 182937 acccagccaaattttaaatc 182956
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 cgctggtgcagccggcggtg 408 |||||||||||||||||||| Sbjct: 1420650 cgctggtgcagccggcggtg 1420669
>emb|CR450766.5| Zebrafish DNA sequence from clone DKEY-192C10 in linkage group 8, complete sequence Length = 127307 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 aactactaattgaacagcaaatcc 165 |||||||| ||||||||||||||| Sbjct: 82181 aactactacttgaacagcaaatcc 82204
>gb|AC115302.4| Mus musculus BAC clone RP24-107D24 from chromosome 18, complete sequence Length = 162927 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 taaccaaacatacccagcag 259 |||||||||||||||||||| Sbjct: 11614 taaccaaacatacccagcag 11633
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 gtgctcgaagcacttgccgc 388 |||||||||||||||||||| Sbjct: 4074138 gtgctcgaagcacttgccgc 4074157
>gb|AC161813.2| Mus musculus chromosome 5, clone RP23-264M9, complete sequence Length = 154852 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 acccagccaaattttaaatc 24 |||||||||||||||||||| Sbjct: 72336 acccagccaaattttaaatc 72317
>gb|AC109806.12| Mus musculus chromosome 1, clone RP23-310C14, complete sequence Length = 198227 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 aactactaattgaacagcaa 161 |||||||||||||||||||| Sbjct: 24853 aactactaattgaacagcaa 24834
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 cgctggtgcagccggcggtg 408 |||||||||||||||||||| Sbjct: 3795931 cgctggtgcagccggcggtg 3795912
>gb|AE011752.1| Xanthomonas axonopodis pv. citri str. 306, section 130 of 469 of the complete genome Length = 12030 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 cgctggtgcagccggcggtg 408 |||||||||||||||||||| Sbjct: 11561 cgctggtgcagccggcggtg 11580
>gb|AE012211.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 119 of 460 of the complete genome Length = 14128 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 cgctggtgcagccggcggtg 408 |||||||||||||||||||| Sbjct: 13490 cgctggtgcagccggcggtg 13509
>gb|AC093876.3| Homo sapiens BAC clone RP11-631I21 from 4, complete sequence Length = 183972 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 aattttaaatctgatttaaa 33 |||||||||||||||||||| Sbjct: 172895 aattttaaatctgatttaaa 172876
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 cgctggtgcagccggcggtg 408 |||||||||||||||||||| Sbjct: 3727289 cgctggtgcagccggcggtg 3727270
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 381 cttgccgccgctggtgcagccggc 404 ||||||||||||||||||| |||| Sbjct: 2519606 cttgccgccgctggtgcaggcggc 2519583
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tgccgccgctggtgcagccg 402 |||||||||||||||||||| Sbjct: 6414404 tgccgccgctggtgcagccg 6414385 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tgccgccgctggtgcagccg 402 |||||||||||||||||||| Sbjct: 6406897 tgccgccgctggtgcagccg 6406878
>dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_D05 Length = 128178 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tgccgccgctggtgcagccg 402 |||||||||||||||||||| Sbjct: 56397 tgccgccgctggtgcagccg 56378 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tgccgccgctggtgcagccg 402 |||||||||||||||||||| Sbjct: 48890 tgccgccgctggtgcagccg 48871
>dbj|AK106388.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E09, full insert sequence Length = 2044 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tgccgccgctggtgcagccg 402 |||||||||||||||||||| Sbjct: 89 tgccgccgctggtgcagccg 108
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 cgctggtgcagccggcggtg 408 |||||||||||||||||||| Sbjct: 3796537 cgctggtgcagccggcggtg 3796518 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,115,841 Number of Sequences: 3902068 Number of extensions: 3115841 Number of successful extensions: 53680 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53361 Number of HSP's gapped (non-prelim): 319 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)