ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing pr... 31 1.6
2SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing pr... 31 1.6
3SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing pr... 31 1.6
4SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing prot... 31 1.6
5NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO ... 30 2.1
6URED_SYNY3 (P73047) Urease accessory protein ureD 30 3.5
7DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5) 28 7.9
8DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5) 28 7.9
9SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6... 28 7.9
10SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6... 28 7.9
11DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain)... 28 7.9

>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 421 QEKAKKERLRLWQYGDVESD 362
           QE AK  RL LW+YGD  +D
Sbjct: 882 QESAKSARLNLWRYGDFRAD 901



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>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (EBNA2 coactivator
           p100)
          Length = 910

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 421 QEKAKKERLRLWQYGDVESD 362
           QE AK  RL LW+YGD  +D
Sbjct: 882 QESAKSARLNLWRYGDFRAD 901



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>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 421 QEKAKKERLRLWQYGDVESD 362
           QE AK  RL LW+YGD  +D
Sbjct: 882 QESAKSARLNLWRYGDFRAD 901



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>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (SND p102) (p105
           coactivator)
          Length = 909

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 421 QEKAKKERLRLWQYGDVESD 362
           QE AK  RL LW+YGD  +D
Sbjct: 881 QESAKSARLNLWRYGDFRAD 900



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>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate|
           synthetase B 2)
          Length = 536

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 301 CLLSSTDAAGVSSRLELALPRRIQ 372
           C  S TD AG +SRL L LP RI+
Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419



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>URED_SYNY3 (P73047) Urease accessory protein ureD|
          Length = 270

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 326 AASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 201
           A++V+    W A  W RY+  GHR ++   L+    K +R +
Sbjct: 4   ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45



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>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)|
          Length = 867

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 393 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 301
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)|
          Length = 864

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 393 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 301
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)|
           (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 1172

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 99  VLPLQRRNAVHKGHRP 146
           VLP  RRN VH GH P
Sbjct: 628 VLPFSRRNRVHTGHHP 643



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>SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)|
           (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 1172

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 99  VLPLQRRNAVHKGHRP 146
           VLP  RRN VH GH P
Sbjct: 628 VLPFSRRNRVHTGHHP 643



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>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)|
          Length = 851

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 393 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 301
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,371,173
Number of Sequences: 219361
Number of extensions: 1001150
Number of successful extensions: 2600
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2600
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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