ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03b05 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 421 QEKAKKERLRLWQYGDVESD 362 QE AK RL LW+YGD +D Sbjct: 882 QESAKSARLNLWRYGDFRAD 901
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 421 QEKAKKERLRLWQYGDVESD 362 QE AK RL LW+YGD +D Sbjct: 882 QESAKSARLNLWRYGDFRAD 901
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 421 QEKAKKERLRLWQYGDVESD 362 QE AK RL LW+YGD +D Sbjct: 882 QESAKSARLNLWRYGDFRAD 901
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 421 QEKAKKERLRLWQYGDVESD 362 QE AK RL LW+YGD +D Sbjct: 881 QESAKSARLNLWRYGDFRAD 900
>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate| synthetase B 2) Length = 536 Score = 30.4 bits (67), Expect = 2.1 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = +1 Query: 301 CLLSSTDAAGVSSRLELALPRRIQ 372 C S TD AG +SRL L LP RI+ Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419
>URED_SYNY3 (P73047) Urease accessory protein ureD| Length = 270 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -3 Query: 326 AASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 201 A++V+ W A W RY+ GHR ++ L+ K +R + Sbjct: 4 ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45
>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)| Length = 867 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 393 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 301 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 393 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 301 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636
>SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)| (Lysine--tRNA ligase 2) (LysRS 2) Length = 1172 Score = 28.5 bits (62), Expect = 7.9 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +3 Query: 99 VLPLQRRNAVHKGHRP 146 VLP RRN VH GH P Sbjct: 628 VLPFSRRNRVHTGHHP 643
>SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)| (Lysine--tRNA ligase 2) (LysRS 2) Length = 1172 Score = 28.5 bits (62), Expect = 7.9 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = +3 Query: 99 VLPLQRRNAVHKGHRP 146 VLP RRN VH GH P Sbjct: 628 VLPFSRRNRVHTGHHP 643
>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)| Length = 851 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -2 Query: 393 ACGSMETLNPTRKSKLQAGGDPRRVGRREKA 301 AC + E ++ + S L+AG P RVG +EKA Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,371,173 Number of Sequences: 219361 Number of extensions: 1001150 Number of successful extensions: 2600 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2517 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2600 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
