ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03a11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ308532.1| Triticum monococcum cultivar DV92 carbamoylphosphate synthase large subunit-like gene, partial sequence Length = 818 Score = 299 bits (151), Expect = 5e-78 Identities = 175/183 (95%) Strand = Plus / Minus Query: 333 accttgtaggccagggctagcctgcgcagctggaggccatctctcgagtcaaggtcatcg 392 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 799 accttgtaggccagagctagcctacgcagctggaggccatctctcgagtcaaggtcatcg 740 Query: 393 cctgagcttgttatcaccatcacctgtatctgaccattcttgagcatatctctggcattt 452 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 739 ccagagcttgttatcaccatcacctgtatctgaccattcttgagcatatctctggcattt 680 Query: 453 ggtcgcccctcgtgtattttcagaactggttccactgggatgccctcaagctcaagtact 512 ||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||| Sbjct: 679 ggtcgcccctcgtgtatcttcagaactggctccactgtaatgccctcaagctgaagtact 620 Query: 513 ttg 515 ||| Sbjct: 619 ttg 617
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 281 bits (142), Expect = 1e-72 Identities = 295/346 (85%) Strand = Plus / Minus Query: 170 aagggtatgaccctaaggggcggcttgtgcagctggcaacttctgtggtgcatcagcagg 229 ||||| ||||||||||| ||| ||| || ||| |||| ||||| | |||||| | || Sbjct: 21893717 aagggcatgaccctaagaggcactttgcgctgcttgcaagttctgggatgcatctgtagt 21893658 Query: 230 ctggaaatagtcttgcaatgcaagaatctcaatggacttgttcttcatactcttgatggc 289 |||||| || ||||||||||| ||| ||||||| || |||||||||| || ||||| || Sbjct: 21893657 ctggaagtaatcttgcaatgcgagagtctcaattgatttgttcttcaagcttttgatagc 21893598 Query: 290 gtccatggtagcccgagcaccatccacggttgtagctatggggaccttgtaggccagggc 349 || |||||||| || || ||||||||||| ||| ||| |||||||||||||||||||| Sbjct: 21893597 atcgatggtagcacgcgccccatccacggtagtaattatcgggaccttgtaggccagggc 21893538 Query: 350 tagcctgcgcagctggaggccatctctcgagtcaaggtcatcgcctgagcttgttatcac 409 | ||||| ||||||||||||||| | |||||||| |||| |||||||| |||||||| Sbjct: 21893537 caatctgcggagctggaggccatctttggagtcaagagcatcacctgagctagttatcac 21893478 Query: 410 catcacctgtatctgaccattcttgagcatatctctggcatttggtcgcccctcgtgtat 469 |||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||| Sbjct: 21893477 catcacctgtatctgaccattcttaagcatgtccctggcatttggccgcccctcatgtat 21893418 Query: 470 tttcagaactggttccactgggatgccctcaagctcaagtactttg 515 |||||||||||| ||||||||||||||||| |||| |||||||||| Sbjct: 21893417 tttcagaactggctccactgggatgccctccagctgaagtactttg 21893372
>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1114B07 Length = 148060 Score = 281 bits (142), Expect = 1e-72 Identities = 295/346 (85%) Strand = Plus / Minus Query: 170 aagggtatgaccctaaggggcggcttgtgcagctggcaacttctgtggtgcatcagcagg 229 ||||| ||||||||||| ||| ||| || ||| |||| ||||| | |||||| | || Sbjct: 123010 aagggcatgaccctaagaggcactttgcgctgcttgcaagttctgggatgcatctgtagt 122951 Query: 230 ctggaaatagtcttgcaatgcaagaatctcaatggacttgttcttcatactcttgatggc 289 |||||| || ||||||||||| ||| ||||||| || |||||||||| || ||||| || Sbjct: 122950 ctggaagtaatcttgcaatgcgagagtctcaattgatttgttcttcaagcttttgatagc 122891 Query: 290 gtccatggtagcccgagcaccatccacggttgtagctatggggaccttgtaggccagggc 349 || |||||||| || || ||||||||||| ||| ||| |||||||||||||||||||| Sbjct: 122890 atcgatggtagcacgcgccccatccacggtagtaattatcgggaccttgtaggccagggc 122831 Query: 350 tagcctgcgcagctggaggccatctctcgagtcaaggtcatcgcctgagcttgttatcac 409 | ||||| ||||||||||||||| | |||||||| |||| |||||||| |||||||| Sbjct: 122830 caatctgcggagctggaggccatctttggagtcaagagcatcacctgagctagttatcac 122771 Query: 410 catcacctgtatctgaccattcttgagcatatctctggcatttggtcgcccctcgtgtat 469 |||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||| Sbjct: 122770 catcacctgtatctgaccattcttaagcatgtccctggcatttggccgcccctcatgtat 122711 Query: 470 tttcagaactggttccactgggatgccctcaagctcaagtactttg 515 |||||||||||| ||||||||||||||||| |||| |||||||||| Sbjct: 122710 tttcagaactggctccactgggatgccctccagctgaagtactttg 122665
>dbj|AK061023.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D04, full insert sequence Length = 1096 Score = 281 bits (142), Expect = 1e-72 Identities = 295/346 (85%) Strand = Plus / Minus Query: 170 aagggtatgaccctaaggggcggcttgtgcagctggcaacttctgtggtgcatcagcagg 229 ||||| ||||||||||| ||| ||| || ||| |||| ||||| | |||||| | || Sbjct: 994 aagggcatgaccctaagaggcactttgcgctgcttgcaagttctgggatgcatctgtagt 935 Query: 230 ctggaaatagtcttgcaatgcaagaatctcaatggacttgttcttcatactcttgatggc 289 |||||| || ||||||||||| ||| ||||||| || |||||||||| || ||||| || Sbjct: 934 ctggaagtaatcttgcaatgcgagagtctcaattgatttgttcttcaagcttttgatagc 875 Query: 290 gtccatggtagcccgagcaccatccacggttgtagctatggggaccttgtaggccagggc 349 || |||||||| || || ||||||||||| ||| ||| |||||||||||||||||||| Sbjct: 874 atcgatggtagcacgcgccccatccacggtagtaattatcgggaccttgtaggccagggc 815 Query: 350 tagcctgcgcagctggaggccatctctcgagtcaaggtcatcgcctgagcttgttatcac 409 | ||||| ||||||||||||||| | |||||||| |||| |||||||| |||||||| Sbjct: 814 caatctgcggagctggaggccatctttggagtcaagagcatcacctgagctagttatcac 755 Query: 410 catcacctgtatctgaccattcttgagcatatctctggcatttggtcgcccctcgtgtat 469 |||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||| Sbjct: 754 catcacctgtatctgaccattcttaagcatgtccctggcatttggccgcccctcatgtat 695 Query: 470 tttcagaactggttccactgggatgccctcaagctcaagtactttg 515 |||||||||||| ||||||||||||||||| |||| |||||||||| Sbjct: 694 tttcagaactggctccactgggatgccctccagctgaagtactttg 649
>ref|XM_463327.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3279 Score = 276 bits (139), Expect = 7e-71 Identities = 268/311 (86%) Strand = Plus / Minus Query: 205 gcaacttctgtggtgcatcagcaggctggaaatagtcttgcaatgcaagaatctcaatgg 264 |||| ||||| | |||||| | || |||||| || ||||||||||| ||| ||||||| | Sbjct: 3256 gcaagttctgggatgcatctgtagtctggaagtaatcttgcaatgcgagagtctcaattg 3197 Query: 265 acttgttcttcatactcttgatggcgtccatggtagcccgagcaccatccacggttgtag 324 | |||||||||| || ||||| || || |||||||| || || ||||||||||| ||| Sbjct: 3196 atttgttcttcaagcttttgatagcatcgatggtagcacgcgccccatccacggtagtaa 3137 Query: 325 ctatggggaccttgtaggccagggctagcctgcgcagctggaggccatctctcgagtcaa 384 ||| |||||||||||||||||||| | ||||| ||||||||||||||| | ||||||| Sbjct: 3136 ttatcgggaccttgtaggccagggccaatctgcggagctggaggccatctttggagtcaa 3077 Query: 385 ggtcatcgcctgagcttgttatcaccatcacctgtatctgaccattcttgagcatatctc 444 | |||| |||||||| |||||||||||||||||||||||||||||||| ||||| || | Sbjct: 3076 gagcatcacctgagctagttatcaccatcacctgtatctgaccattcttaagcatgtccc 3017 Query: 445 tggcatttggtcgcccctcgtgtattttcagaactggttccactgggatgccctcaagct 504 |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct: 3016 tggcatttggccgcccctcatgtattttcagaactggctccactgggatgccctccagct 2957 Query: 505 caagtactttg 515 |||||||||| Sbjct: 2956 gaagtactttg 2946
>gb|AY108969.1| Zea mays PCO147581 mRNA sequence Length = 637 Score = 163 bits (82), Expect = 7e-37 Identities = 235/286 (82%) Strand = Plus / Minus Query: 219 gcatcagcaggctggaaatagtcttgcaatgcaagaatctcaatggacttgttcttcata 278 ||||| |||| |||||| || |||||||| || || |||||||| ||||||| ||||| Sbjct: 297 gcatcggcagtctggaagtaatcttgcaaggcgaggatctcaatcgacttgtccttcaag 238 Query: 279 ctcttgatggcgtccatggtagcccgagcaccatccacggttgtagctatggggaccttg 338 ||||||||||| || |||| || || || || || |||||||| || || |||||| Sbjct: 237 ctcttgatggcatctatggaggcacgtgcgccgtcgacggttgtgataattggcaccttg 178 Query: 339 taggccagggctagcctgcgcagctggaggccatctctcgagtcaaggtcatcgcctgag 398 ||||| ||||| ||||| || |||||||| || ||| | |||||||| |||| || ||| Sbjct: 177 taggcgagggcaagcctacgaagctggagaccgtctttggagtcaagagcatcaccagag 118 Query: 399 cttgttatcaccatcacctgtatctgaccattcttgagcatatctctggcatttggtcgc 458 |||||||||||||| | |||||||||||||||||| |||||||| |||||||| |||||| Sbjct: 117 cttgttatcaccatgatctgtatctgaccattcttcagcatatccctggcattcggtcgc 58 Query: 459 ccctcgtgtattttcagaactggttccactgggatgccctcaagct 504 ||||| |||||||| || || || |||||||| | |||||| |||| Sbjct: 57 ccctcatgtatttttagcaccggctccactggaacgccctcgagct 12
>gb|AC009027.10| Homo sapiens chromosome 16 clone RP11-123C5, complete sequence Length = 178256 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 35 cccagcaaccaaatgtggtttcgacac 61 ||||||||||||||||| ||||||||| Sbjct: 13768 cccagcaaccaaatgtgttttcgacac 13794
>gb|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502K10, complete sequence Length = 180835 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 35 cccagcaaccaaatgtggtttcgacac 61 ||||||||||||||||| ||||||||| Sbjct: 98308 cccagcaaccaaatgtgttttcgacac 98334
>emb|AL049629.28|HSJ541C22 Human DNA sequence from clone RP4-541C22 on chromosome 11p13, complete sequence Length = 129298 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 tctgaccattcttgagcatat 441 ||||||||||||||||||||| Sbjct: 35810 tctgaccattcttgagcatat 35830
>emb|AL837505.21| Mouse DNA sequence from clone RP23-181N6 on chromosome 4, complete sequence Length = 186045 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 aataaagacattacatggaaa 155 ||||||||||||||||||||| Sbjct: 110194 aataaagacattacatggaaa 110214
>emb|Z14115.1|HSCD59EX4 H.sapiens gene for CD59 protein, exon 4 Length = 2539 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 421 tctgaccattcttgagcatat 441 ||||||||||||||||||||| Sbjct: 65 tctgaccattcttgagcatat 85
>gb|U09361.1|RNU09361 Rattus norvegicus clone p17.1 tenascin mRNA, partial cds Length = 1727 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 ctgggatgccctcaagctcaa 507 ||||||||||||||||||||| Sbjct: 365 ctgggatgccctcaagctcaa 385
>gb|AC092120.4| Homo sapiens chromosome 16 clone RP1-168P16, complete sequence Length = 113368 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 cagcaggctggaaatagtct 242 |||||||||||||||||||| Sbjct: 2058 cagcaggctggaaatagtct 2077
>gb|AC127493.4| Homo sapiens chromosome 18, clone RP11-539C8, complete sequence Length = 105459 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 ttgttcttcatactcttgat 286 |||||||||||||||||||| Sbjct: 89901 ttgttcttcatactcttgat 89920
>emb|AL109842.7|HSDJ726A1 Human DNA sequence from clone RP4-726A1 on chromosome 6q22.2-23.1 Contains part of the TCBA1 gene for T-cell lymphoma breakpoint associated target 1, complete sequence Length = 120998 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 gctggaaatagtcttgcaat 248 |||||||||||||||||||| Sbjct: 64505 gctggaaatagtcttgcaat 64486
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tatcgcagcagcagataagc 95 |||||||||||||||||||| Sbjct: 1191289 tatcgcagcagcagataagc 1191270
>gb|AC023678.4| Drosophila melanogaster 3L BAC RP98-14K14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 186990 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 gcagctggaggccatctctc 377 |||||||||||||||||||| Sbjct: 50639 gcagctggaggccatctctc 50658
>gb|AC093437.2| Drosophila melanogaster 3L BAC RP98-5P17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 197878 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 gcagctggaggccatctctc 377 |||||||||||||||||||| Sbjct: 168684 gcagctggaggccatctctc 168665
>ref|NM_140296.2| Drosophila melanogaster CG5642-RA (CG5642), mRNA Length = 1856 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 gcagctggaggccatctctc 377 |||||||||||||||||||| Sbjct: 766 gcagctggaggccatctctc 785
>gb|AY089607.1| Drosophila melanogaster RE21692 full insert cDNA Length = 1861 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 gcagctggaggccatctctc 377 |||||||||||||||||||| Sbjct: 759 gcagctggaggccatctctc 778
>gb|AC103890.1| 16q24.3 clone, complete sequence Length = 129848 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 cagcaggctggaaatagtct 242 |||||||||||||||||||| Sbjct: 8895 cagcaggctggaaatagtct 8876
>gb|AC137932.1| Homo sapiens chromosome 16 clone GS2-740I5, complete sequence Length = 129785 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 cagcaggctggaaatagtct 242 |||||||||||||||||||| Sbjct: 120891 cagcaggctggaaatagtct 120910
>gb|AC135335.3| Homo sapiens chromosome 18, clone RP13-1026H1, complete sequence Length = 155498 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 ttgttcttcatactcttgat 286 |||||||||||||||||||| Sbjct: 32039 ttgttcttcatactcttgat 32020
>gb|AE003542.3| Drosophila melanogaster chromosome 3L, section 43 of 83 of the complete sequence Length = 303022 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 gcagctggaggccatctctc 377 |||||||||||||||||||| Sbjct: 136477 gcagctggaggccatctctc 136458 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,354,609 Number of Sequences: 3902068 Number of extensions: 4354609 Number of successful extensions: 77256 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77186 Number of HSP's gapped (non-prelim): 70 length of query: 515 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 492 effective length of database: 17,143,297,704 effective search space: 8434502470368 effective search space used: 8434502470368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
