ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl03a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4,... 100 7e-18
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
3dbj|AK101563.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
4dbj|AK065819.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
5dbj|AB101645.1| Oryza sativa (japonica cultivar-group) Roc2 mRNA... 100 7e-18
6gb|AY107087.1| Zea mays PCO119798 mRNA sequence 84 4e-13
7gb|AY112016.1| Zea mays CL52199_-1 mRNA sequence 68 2e-08
8emb|AJ250987.1|ZMA250987 Zea mays mRNA for OCL5 protein (ocl5 gene) 50 0.005
9gb|AY108675.1| Zea mays PCO066290 mRNA sequence 50 0.005
10gb|AF530914.1| Gossypium hirsutum homeodomain protein GhHOX2 mRN... 46 0.084
11gb|AC161269.4| Mus musculus BAC clone RP23-120K16 from chromosom... 44 0.33
12gb|AC121860.4| Mus musculus BAC clone RP24-105K16 from chromosom... 44 0.33
13dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
14gb|AY130425.1| Myxine glutinosa nuclear receptor subfamily 2 gro... 44 0.33
15dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
16gb|S66114.1| ANP1 [Saccharomyces cerevisiae, mRNA, 2001 nt] 42 1.3
17gb|S65964.1| ARC: TIF51A...UTR2 [Saccharomyces cerevisiae, Genom... 42 1.3
18gb|U18779.1|SCE8199 Saccharomyces cerevisiae chromosome V cosmid... 42 1.3
19gb|AC132456.5| Mus musculus BAC clone RP23-134L6 from 1, complet... 42 1.3
20gb|DQ331946.1| Synthetic construct Saccharomyces cerevisiae clon... 42 1.3
21emb|AL591209.17| Mouse DNA sequence from clone RP23-309H19 on ch... 42 1.3
22emb|Z46906.1|SSGGTPEP Sus scrofa 42 1.3
23gb|L22173.1|YSCRAD23CY Saccharomyces cerevisiae aminonitrophenyl... 42 1.3
24gb|L22171.1|YSCANP1A Saccharomyces cerevisiae aminonitrophenyl p... 42 1.3
25gb|AY591640.1| Mus musculus clone IgK2-35 immunoglobulin kappa-l... 40 5.2
26gb|AC161812.3| Mus musculus chromosome 15, clone RP23-195I24, co... 40 5.2
27gb|AC159715.5| Mus musculus 6 BAC RP23-367A13 (Roswell Park Canc... 40 5.2
28gb|AC117418.6| Homo sapiens 3 BAC RP11-14N19 (Roswell Park Cance... 40 5.2
29gb|AC149494.4| Medicago truncatula clone mth2-116m7, complete se... 40 5.2
30gb|CP000087.1| Rickettsia bellii RML369-C, complete genome 40 5.2
31emb|Z97344.2|ATFCA9 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 5.2
32emb|Z33995.1|KLPHO5G K.lactis (CBS 2359/152) PHO5 gene for acid ... 40 5.2
33emb|X61394.1|RNCCB R.norvegicus mRNA for brain calcium channel b... 40 5.2
34emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 5.2
35emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 5.2
36emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, stra... 40 5.2
37emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, ... 40 5.2
38gb|AC090994.8| Homo sapiens chromosome 8, clone RP11-536K17, com... 40 5.2
39gb|AC104834.4| Mus Musculus Strain C57BL6/J Chromosome 15 RP23-2... 40 5.2
40emb|BX890589.11| Zebrafish DNA sequence from clone DKEY-14I16 in... 40 5.2
41dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
42dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
43gb|AC104698.2| Homo sapiens BAC clone RP11-517F1 from 2, complet... 40 5.2
44gb|AC092630.3| Homo sapiens BAC clone RP11-321C18 from 2, comple... 40 5.2
45ref|NM_017346.1| Rattus norvegicus calcium channel, voltage-depe... 40 5.2
46dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
47dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
48dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
49dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
50dbj|AP005620.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
51gb|AC154006.3| Mus musculus 6 BAC RP24-314D8 (Roswell Park Cance... 40 5.2
52emb|BX957260.10| Zebrafish DNA sequence from clone DKEY-1N7 in l... 40 5.2
53emb|CR847960.14| Zebrafish DNA sequence from clone DKEY-30E1 in ... 40 5.2
54emb|AL844197.6| Zebrafish DNA sequence from clone DKEY-156L9 in ... 40 5.2
55emb|AL974310.15| Zebrafish DNA sequence from clone DKEY-14J6, co... 40 5.2
56emb|AJ231200.1|MMU231200 Mus musculus IgVk cu2 gene 40 5.2
57emb|AL606498.17| Mouse DNA sequence from clone RP23-197C15 on ch... 40 5.2 
>emb|AL606669.4|OSJN00106 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060E08,
              complete sequence
          Length = 166951

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                          
Query: 230    aggtagcagcatccgagaggccgacacgaaaatgaagtcaatacccgaaccaaccgccct 289
              |||||||||||||||||||||  ||| ||| | |||||||||||||||||||||||||||
Sbjct: 107244 aggtagcagcatccgagaggcgaacatgaagaggaagtcaatacccgaaccaaccgccct 107303

                            
Query: 290    tgcgtaggggtgac 303
              ||||||| ||||||
Sbjct: 107304 tgcgtagtggtgac 107317
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 68/74 (91%)
 Strand = Plus / Plus

                                                                            
Query: 230      aggtagcagcatccgagaggccgacacgaaaatgaagtcaatacccgaaccaaccgccct 289
                |||||||||||||||||||||  ||| ||| | |||||||||||||||||||||||||||
Sbjct: 31934378 aggtagcagcatccgagaggcgaacatgaagaggaagtcaatacccgaaccaaccgccct 31934437

                              
Query: 290      tgcgtaggggtgac 303
                ||||||| ||||||
Sbjct: 31934438 tgcgtagtggtgac 31934451
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>dbj|AK101563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050E18, full
            insert sequence
          Length = 2264

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                        
Query: 230  aggtagcagcatccgagaggccgacacgaaaatgaagtcaatacccgaaccaaccgccct 289
            |||||||||||||||||||||  ||| ||| | |||||||||||||||||||||||||||
Sbjct: 2023 aggtagcagcatccgagaggcgaacatgaagaggaagtcaatacccgaaccaaccgccct 1964

                          
Query: 290  tgcgtaggggtgac 303
            ||||||| ||||||
Sbjct: 1963 tgcgtagtggtgac 1950
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>dbj|AK065819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D01, full
            insert sequence
          Length = 2343

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                        
Query: 230  aggtagcagcatccgagaggccgacacgaaaatgaagtcaatacccgaaccaaccgccct 289
            |||||||||||||||||||||  ||| ||| | |||||||||||||||||||||||||||
Sbjct: 2168 aggtagcagcatccgagaggcgaacatgaagaggaagtcaatacccgaaccaaccgccct 2109

                          
Query: 290  tgcgtaggggtgac 303
            ||||||| ||||||
Sbjct: 2108 tgcgtagtggtgac 2095
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>dbj|AB101645.1| Oryza sativa (japonica cultivar-group) Roc2 mRNA for GL2-type
            homeodomain protein, complete cds
          Length = 3063

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 68/74 (91%)
 Strand = Plus / Minus

                                                                        
Query: 230  aggtagcagcatccgagaggccgacacgaaaatgaagtcaatacccgaaccaaccgccct 289
            |||||||||||||||||||||  ||| ||| | |||||||||||||||||||||||||||
Sbjct: 2871 aggtagcagcatccgagaggcgaacatgaagaggaagtcaatacccgaaccaaccgccct 2812

                          
Query: 290  tgcgtaggggtgac 303
            ||||||| ||||||
Sbjct: 2811 tgcgtagtggtgac 2798
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>gb|AY107087.1| Zea mays PCO119798 mRNA sequence
          Length = 736

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                       
Query: 226 tcagaggtagcagcatccgagaggccgacacgaaaatgaagtcaatacccgaaccaaccg 285
           ||||||| |||||||||||||||||| ||| ||| | |||||||||||||||||||||  
Sbjct: 469 tcagaggaagcagcatccgagaggccaacatgaagaggaagtcaatacccgaaccaacta 410

                             
Query: 286 cccttgcgtaggggtgac 303
           ||||||||| | ||||||
Sbjct: 409 cccttgcgtcgtggtgac 392
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>gb|AY112016.1| Zea mays CL52199_-1 mRNA sequence
          Length = 526

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                       
Query: 226 tcagaggtagcagcatccgagaggccgacacgaaaatgaagtcaatacccgaaccaaccg 285
           |||||||||||||||||||||||||| ||| | | | |||||||||| |  |||||||  
Sbjct: 83  tcagaggtagcagcatccgagaggccaacatgtagaggaagtcaatatcttaaccaacaa 142

                             
Query: 286 cccttgcgtaggggtgac 303
           ||||||||||| ||||||
Sbjct: 143 cccttgcgtagtggtgac 160
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>emb|AJ250987.1|ZMA250987 Zea mays mRNA for OCL5 protein (ocl5 gene)
          Length = 3010

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 263  gaagtcaatacccgaaccaaccgcccttgcgtaggggtgac 303
            ||||||||||||||||||| || ||||||| ||| ||||||
Sbjct: 2667 gaagtcaatacccgaaccatccccccttgcatagtggtgac 2627
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>gb|AY108675.1| Zea mays PCO066290 mRNA sequence
          Length = 654

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 263 gaagtcaatacccgaaccaaccgcccttgcgtaggggtgac 303
           ||||||||||||||||||| || ||||||| ||| ||||||
Sbjct: 320 gaagtcaatacccgaaccatccccccttgcatagtggtgac 280
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>gb|AF530914.1| Gossypium hirsutum homeodomain protein GhHOX2 mRNA, complete cds
          Length = 2679

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 262  tgaagtcaatacccgaaccaaccgcccttgc 292
            |||||||||||||||||||| || |||||||
Sbjct: 2616 tgaagtcaatacccgaaccacccacccttgc 2586
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>gb|AC161269.4| Mus musculus BAC clone RP23-120K16 from chromosome 15, complete sequence
          Length = 206234

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 206    aaaaaccctaaaaaagaaactcagag 231
              ||||||| ||||||||||||||||||
Sbjct: 125759 aaaaaccataaaaaagaaactcagag 125784
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>gb|AC121860.4| Mus musculus BAC clone RP24-105K16 from chromosome 15, complete
             sequence
          Length = 148328

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 206   aaaaaccctaaaaaagaaactcagag 231
             ||||||| ||||||||||||||||||
Sbjct: 14468 aaaaaccataaaaaagaaactcagag 14493
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 109      agcactggaagtctgaaacagc 130
                ||||||||||||||||||||||
Sbjct: 18782758 agcactggaagtctgaaacagc 18782779



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 111      cactggaagtctgaaacagcagca 134
                ||||| ||||||||||||||||||
Sbjct: 26276081 cactgaaagtctgaaacagcagca 26276104
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>gb|AY130425.1| Myxine glutinosa nuclear receptor subfamily 2 group F-like (NR2F2)
           mRNA, partial sequence
          Length = 861

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 263 gaagtcaatacccgaaccaacc 284
           ||||||||||||||||||||||
Sbjct: 743 gaagtcaatacccgaaccaacc 764
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>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0055I24
          Length = 155872

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 109    agcactggaagtctgaaacagc 130
              ||||||||||||||||||||||
Sbjct: 115046 agcactggaagtctgaaacagc 115067
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>gb|S66114.1| ANP1 [Saccharomyces cerevisiae, mRNA, 2001 nt]
          Length = 2001

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 297 gggtgaccgcatcttgttttg 317
           |||||||||||||||||||||
Sbjct: 489 gggtgaccgcatcttgttttg 509
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>gb|S65964.1| ARC: TIF51A...UTR2 [Saccharomyces cerevisiae, Genomic, 7 genes, 7529
            nt]
          Length = 7529

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 297  gggtgaccgcatcttgttttg 317
            |||||||||||||||||||||
Sbjct: 1488 gggtgaccgcatcttgttttg 1508
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>gb|U18779.1|SCE8199 Saccharomyces cerevisiae chromosome V cosmid 8199, 8334, and 9871
          Length = 36872

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 297   gggtgaccgcatcttgttttg 317
             |||||||||||||||||||||
Sbjct: 31290 gggtgaccgcatcttgttttg 31270
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>gb|AC132456.5| Mus musculus BAC clone RP23-134L6 from 1, complete sequence
          Length = 204402

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     acagacagacagatgggcaca 83
              |||||||||||||||||||||
Sbjct: 123156 acagacagacagatgggcaca 123176
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>gb|DQ331946.1| Synthetic construct Saccharomyces cerevisiae clone FLH201071.01X
           ANP1 gene, complete sequence
          Length = 1503

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 297 gggtgaccgcatcttgttttg 317
           |||||||||||||||||||||
Sbjct: 237 gggtgaccgcatcttgttttg 257
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>emb|AL591209.17| Mouse DNA sequence from clone RP23-309H19 on chromosome 11, complete
             sequence
          Length = 199634

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    acagacagacagatgggcaca 83
             |||||||||||||||||||||
Sbjct: 82303 acagacagacagatgggcaca 82323
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>emb|Z46906.1|SSGGTPEP Sus scrofa
          Length = 16331

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 214   taaaaaagaaactcagaggta 234
             |||||||||||||||||||||
Sbjct: 12980 taaaaaagaaactcagaggta 13000
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>gb|L22173.1|YSCRAD23CY Saccharomyces cerevisiae aminonitrophenyl propanediol (ANP1), UV
            excision repair protein (RAD23), cytochrome c isozyme
            (CYC7) genes, complete cds
          Length = 7529

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 297  gggtgaccgcatcttgttttg 317
            |||||||||||||||||||||
Sbjct: 1488 gggtgaccgcatcttgttttg 1508
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>gb|L22171.1|YSCANP1A Saccharomyces cerevisiae aminonitrophenyl propanediol resistance
           (ANP1) gene, complete cds
          Length = 1800

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 297 gggtgaccgcatcttgttttg 317
           |||||||||||||||||||||
Sbjct: 348 gggtgaccgcatcttgttttg 368
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>gb|AY591640.1| Mus musculus clone IgK2-35 immunoglobulin kappa-like gene, partial
            sequence
          Length = 2723

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 46   acccacaatccaaagcaaca 65
            ||||||||||||||||||||
Sbjct: 1051 acccacaatccaaagcaaca 1032
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>gb|AC161812.3| Mus musculus chromosome 15, clone RP23-195I24, complete sequence
          Length = 204464

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     acagacagacagatgggcac 82
              ||||||||||||||||||||
Sbjct: 164899 acagacagacagatgggcac 164918
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>gb|AC159715.5| Mus musculus 6 BAC RP23-367A13 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209869

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    acccacaatccaaagcaaca 65
             ||||||||||||||||||||
Sbjct: 31103 acccacaatccaaagcaaca 31122
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>gb|AC117418.6| Homo sapiens 3 BAC RP11-14N19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 53666

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   ccctaaaaaagaaactcaga 230
             ||||||||||||||||||||
Sbjct: 18243 ccctaaaaaagaaactcaga 18262
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>gb|AC149494.4| Medicago truncatula clone mth2-116m7, complete sequence
          Length = 95710

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   aagtcaatacccgaaccaac 283
             ||||||||||||||||||||
Sbjct: 87721 aagtcaatacccgaaccaac 87702
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>gb|CP000087.1| Rickettsia bellii RML369-C, complete genome
          Length = 1522076

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 322     atgttttcttgcatggaacgaaaa 345
               |||||| |||||||||||||||||
Sbjct: 1076722 atgtttgcttgcatggaacgaaaa 1076745
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>emb|Z97344.2|ATFCA9 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 9
          Length = 81835

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   gaagtcaatacccgaaccaa 282
             ||||||||||||||||||||
Sbjct: 21460 gaagtcaatacccgaaccaa 21479
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>emb|Z33995.1|KLPHO5G K.lactis (CBS 2359/152) PHO5 gene for acid phosphatase
          Length = 2772

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 105 acaaagcactggaagtctgaaaca 128
           |||||||||||||||| |||||||
Sbjct: 172 acaaagcactggaagtgtgaaaca 195
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>emb|X61394.1|RNCCB R.norvegicus mRNA for brain calcium channel beta subunit
          Length = 3293

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 63   acagacagacagatgggcac 82
            ||||||||||||||||||||
Sbjct: 3190 acagacagacagatgggcac 3171
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>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 1715506

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   acaaagcactggaagtctgaaaca 128
             |||||||||||||||| |||||||
Sbjct: 17223 acaaagcactggaagtgtgaaaca 17200
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>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 1320834

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   acaaagcactggaagtctgaaaca 128
             |||||||||||||||| |||||||
Sbjct: 17267 acaaagcactggaagtgtgaaaca 17244
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>emb|BX842651.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 6/11
          Length = 346161

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 356    tttccccggtcgaattcaca 375
              ||||||||||||||||||||
Sbjct: 220286 tttccccggtcgaattcaca 220305
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>emb|AL161547.2|ATCHRIV47 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 47
          Length = 198067

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   gaagtcaatacccgaaccaa 282
             ||||||||||||||||||||
Sbjct: 16472 gaagtcaatacccgaaccaa 16491
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>gb|AC090994.8| Homo sapiens chromosome 8, clone RP11-536K17, complete sequence
          Length = 200326

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    gctacaaaattataaaccca 50
             ||||||||||||||||||||
Sbjct: 19155 gctacaaaattataaaccca 19136
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>gb|AC104834.4| Mus Musculus Strain C57BL6/J Chromosome 15 RP23-274F23, complete sequence
          Length = 215113

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     acagacagacagatgggcac 82
              ||||||||||||||||||||
Sbjct: 115134 acagacagacagatgggcac 115115
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>emb|BX890589.11| Zebrafish DNA sequence from clone DKEY-14I16 in linkage group 5, complete
              sequence
          Length = 204925

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     aacagacagacagatgggca 81
              ||||||||||||||||||||
Sbjct: 186637 aacagacagacagatgggca 186618
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 265     agtcaatacccgaaccaacc 284
               ||||||||||||||||||||
Sbjct: 2027850 agtcaatacccgaaccaacc 2027869
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 93       tctgctgcacctacaaagca 112
                ||||||||||||||||||||
Sbjct: 39020087 tctgctgcacctacaaagca 39020106
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>gb|AC104698.2| Homo sapiens BAC clone RP11-517F1 from 2, complete sequence
          Length = 115170

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 214   taaaaaagaaactcagaggtagca 237
             |||||||||||||||| |||||||
Sbjct: 23084 taaaaaagaaactcaggggtagca 23107
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>gb|AC092630.3| Homo sapiens BAC clone RP11-321C18 from 2, complete sequence
          Length = 185947

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   cctaaaaaagaaactcagag 231
             ||||||||||||||||||||
Sbjct: 51707 cctaaaaaagaaactcagag 51688
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>ref|NM_017346.1| Rattus norvegicus calcium channel, voltage-dependent, beta 1 subunit
            (Cacnb1), mRNA
          Length = 3293

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 63   acagacagacagatgggcac 82
            ||||||||||||||||||||
Sbjct: 3190 acagacagacagatgggcac 3171
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>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0674H09
          Length = 142955

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    tctgctgcacctacaaagca 112
             ||||||||||||||||||||
Sbjct: 93720 tctgctgcacctacaaagca 93739
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>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0506A10
          Length = 145265

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    tctgctgcacctacaaagca 112
             ||||||||||||||||||||
Sbjct: 38067 tctgctgcacctacaaagca 38086
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>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455H11
          Length = 101607

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   cactggaagtctgaaacagcagca 134
             ||||| ||||||||||||||||||
Sbjct: 50709 cactgaaagtctgaaacagcagca 50732
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>dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1613_G04
          Length = 135357

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   agtcaatacccgaaccaacc 284
             ||||||||||||||||||||
Sbjct: 21380 agtcaatacccgaaccaacc 21399
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>dbj|AP005620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0680F05
          Length = 185495

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    agtcaatacccgaaccaacc 284
              ||||||||||||||||||||
Sbjct: 153048 agtcaatacccgaaccaacc 153067
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>gb|AC154006.3| Mus musculus 6 BAC RP24-314D8 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 151766

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    acccacaatccaaagcaaca 65
             ||||||||||||||||||||
Sbjct: 99586 acccacaatccaaagcaaca 99605
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>emb|BX957260.10| Zebrafish DNA sequence from clone DKEY-1N7 in linkage group 19,
             complete sequence
          Length = 188873

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   gcaaatgttttcttgcatgg 337
             ||||||||||||||||||||
Sbjct: 61717 gcaaatgttttcttgcatgg 61736
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>emb|CR847960.14| Zebrafish DNA sequence from clone DKEY-30E1 in linkage group 10,
             complete sequence
          Length = 216655

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   tttcttgcatggaacgaaaa 345
             ||||||||||||||||||||
Sbjct: 90828 tttcttgcatggaacgaaaa 90847
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>emb|AL844197.6| Zebrafish DNA sequence from clone DKEY-156L9 in linkage group 10,
              complete sequence
          Length = 184895

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    tttcttgcatggaacgaaaa 345
              ||||||||||||||||||||
Sbjct: 137709 tttcttgcatggaacgaaaa 137690
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>emb|AL974310.15| Zebrafish DNA sequence from clone DKEY-14J6, complete sequence
          Length = 183864

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   gcaaatgttttcttgcatgg 337
             ||||||||||||||||||||
Sbjct: 79430 gcaaatgttttcttgcatgg 79411
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>emb|AJ231200.1|MMU231200 Mus musculus IgVk cu2 gene
          Length = 905

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  acccacaatccaaagcaaca 65
           ||||||||||||||||||||
Sbjct: 167 acccacaatccaaagcaaca 148
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>emb|AL606498.17| Mouse DNA sequence from clone RP23-197C15 on chromosome 11, complete
              sequence
          Length = 222330

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     aaagcaacagacagacagat 76
              ||||||||||||||||||||
Sbjct: 109680 aaagcaacagacagacagat 109661


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,888,077
Number of Sequences: 3902068
Number of extensions: 3888077
Number of successful extensions: 95402
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95174
Number of HSP's gapped (non-prelim): 228
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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