ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03a03 |
|---|---|
| Clone Library Name | barley_pub |
>SYV_NEUCR (P28350) Valyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 1093 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -3 Query: 314 RREAAATPSPLCSSAPKKKKEIQPASQQVSESVP 213 ++ AA P SAPK+KKE PA +S P Sbjct: 89 KQAAAKAKQPAAQSAPKEKKEKTPALPPYEDSTP 122
>HSLO_BACSU (P37565) 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33)| Length = 291 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -3 Query: 257 KEIQPASQQVSESVPVLFHCPASQQFF 177 +E+ ++ E++PV FHCP S++ F Sbjct: 216 EEVLGEKPEILETMPVRFHCPCSKERF 242
>DOT1L_DROME (Q8INR6) Histone-lysine N-methyltransferase, H3 lysine-79 specific| (EC 2.1.1.43) (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (Protein grappa) (DOT1-like protein) (dDOT1L) Length = 1848 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 308 EAAATPSPLCSSAPKKKKEIQPASQQVSESVPVLFH 201 E++ +PSPL S APK+ K+ + ++S+P H Sbjct: 1045 ESSPSPSPLHSPAPKRSKQHPAGAINPAQSLPNNLH 1080
>SYV_YEAST (P07806) Valyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 1104 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -3 Query: 314 RREAAATPSPLCSSAPKKKKEIQPASQQVSESVP 213 ++ AAAT PKKKKE++P + + ++VP Sbjct: 99 KKNAAATTGA-SQKKPKKKKEVEPIPEFIDKTVP 131
>IF2_PSEPK (Q88DV7) Translation initiation factor IF-2| Length = 846 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = -3 Query: 314 RREAAATPSPLCSSAPKKKKEIQPASQQVSESVPVLFHCPASQ 186 RR+AA S + AP K E PA+ V+ PV+ PAS+ Sbjct: 135 RRQAAG--SAAAAPAPAAKPEPAPAAAPVAAPAPVVADAPASE 175
>RNS10_RAT (Q5GAM0) Ribonuclease-like protein 10 precursor (Protein Train A)| Length = 212 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 13/59 (22%) Frame = -1 Query: 184 NSLFVDLDLNGE---------DKNVCK*AE----TESCRRLYAIARRMYYYVCTNSKQL 47 NS VD DL G D +CK A+ T +C L I ++ C N+KQL Sbjct: 151 NSPLVDCDLKGGKCHKSPRPFDLTLCKLAKPGQVTPNCHYLTYITEKVIIITCNNTKQL 209
>T2R55_PONPY (Q645U9) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 217 TDSLTCWLAGCISFFFF 267 T+ LT WLA C+S F+F Sbjct: 92 TNHLTTWLATCLSIFYF 108
>T2R55_PAPHA (Q646G3) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 217 TDSLTCWLAGCISFFFF 267 T+ LT WLA C+S F+F Sbjct: 92 TNHLTTWLATCLSIFYF 108
>T2R55_PANTR (Q646B8) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 217 TDSLTCWLAGCISFFFF 267 T+ LT WLA C+S F+F Sbjct: 92 TNHLTTWLATCLSIFYF 108
>T2R55_PANPA (Q5Y4Z2) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 217 TDSLTCWLAGCISFFFF 267 T+ LT WLA C+S F+F Sbjct: 92 TNHLTTWLATCLSIFYF 108
>T2R55_HUMAN (Q7RTR8) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 217 TDSLTCWLAGCISFFFF 267 T+ LT WLA C+S F+F Sbjct: 92 TNHLTTWLATCLSIFYF 108
>SIP3_YEAST (P38717) Protein SIP3| Length = 1229 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = -3 Query: 107 SSVCYCPKDVLLC-MYKLETTCIFSLSL 27 S+ C+C KD + C M +E C+ +SL Sbjct: 619 SATCFCTKDYIYCYMNSMEFICLTKISL 646
>T2R55_GORGO (Q645Z3) Taste receptor type 2 member 55 (T2R55)| Length = 299 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +1 Query: 217 TDSLTCWLAGCISFFFF 267 T+ LT WLA C+S F+F Sbjct: 92 TNHLTTWLATCLSVFYF 108
>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)| Length = 228 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/43 (27%), Positives = 25/43 (58%) Frame = -3 Query: 314 RREAAATPSPLCSSAPKKKKEIQPASQQVSESVPVLFHCPASQ 186 RR +P P ++A + E+ ++V+++VPV+ + P+ Q Sbjct: 159 RRRRRRSPRPRATAAYRSSAEVVERRRRVAQTVPVVRYHPSIQ 201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,015,077 Number of Sequences: 219361 Number of extensions: 1028896 Number of successful extensions: 2932 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2876 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2932 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
