ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl03a02 |
|---|---|
| Clone Library Name | barley_pub |
>ETR1_ARATH (P49333) Ethylene receptor (EC 2.7.13.3)| Length = 738 Score = 33.5 bits (75), Expect = 0.12 Identities = 13/41 (31%), Positives = 28/41 (68%) Frame = -3 Query: 399 LAASSDDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQP 277 L+ ++D + +++C G++G+L KPV+L + D + +L+P Sbjct: 691 LSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 731
>DPOLQ_HUMAN (O75417) DNA polymerase theta (EC 2.7.7.7) (DNA polymerase eta)| Length = 1762 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 384 DDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQPN 274 D NV C+R +N KP ALGD++ R + P+ Sbjct: 402 DSNVTINCERIKLNTEENKPSHFQALGDDISRTVIPS 438
>ETR1_CUCSA (Q9SSY6) Ethylene receptor (EC 2.7.13.3) (CS-ETR1)| Length = 740 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = -3 Query: 399 LAASSDDNVRDRCQRSGINGLLQKPVTL 316 L +SD ++ C R+G++GL+ KPV++ Sbjct: 693 LTGNSDKVTKESCLRAGMDGLILKPVSI 720
>ETR1_CUCMR (O82436) Ethylene receptor (EC 2.7.13.3) (MEETR1) (Cm-ETR1)| Length = 740 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = -3 Query: 399 LAASSDDNVRDRCQRSGINGLLQKPVTL 316 L +SD ++ C R+G++GL+ KPV++ Sbjct: 693 LTGNSDKVTKESCLRAGMDGLILKPVSI 720
>ETR1_BRAOL (O49230) Ethylene receptor (EC 2.7.13.3)| Length = 735 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/28 (35%), Positives = 20/28 (71%) Frame = -3 Query: 399 LAASSDDNVRDRCQRSGINGLLQKPVTL 316 L ++D + +++C G++G+L KPV+L Sbjct: 688 LTGNTDKSTKEKCMSFGLDGVLLKPVSL 715
>SLN1_YEAST (P39928) Osmolarity two-component system protein SLN1 (EC 2.7.13.3)| Length = 1220 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3 Query: 399 LAASSDDNVRDRCQRSGINGLLQKPV 322 L A +DD+ C SG+NG L KP+ Sbjct: 1172 LTAFADDSNIKECLESGMNGFLSKPI 1197
>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) (Fragment) Length = 1146 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = +3 Query: 279 AEGLYTLHLPGPPM*RASGAARLFPTAGTG-PGHCRPSSLPG 401 AEG T+ LPGPP + PT G PG P+ LPG Sbjct: 394 AEGSSTIALPGPP----GPPGPIGPTGPPGVPGPVGPAGLPG 431
>ETR1_PASED (Q9ZWL6) Ethylene receptor (EC 2.7.13.3) (PE-ETR1)| Length = 738 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = -3 Query: 399 LAASSDDNVRDRCQRSGINGLLQKPVTL 316 L AS+D ++ C R G++G + KPV++ Sbjct: 692 LTASTDRMTKENCMRVGMDGAILKPVSV 719
>MI2D_BACSU (P26935) Inositol 2-dehydrogenase (EC 1.1.1.18)| Length = 344 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 9/62 (14%) Frame = +3 Query: 27 IINDPR*EVLQMIKPKKT*SKIPHLFFPK--------GTKRNVQFLPFC-LGTNVSCELY 179 ++ND E +Q+I PKK+ + +PHL P+ G N + C G ++ CE+ Sbjct: 184 LVNDDY-ESVQVIYPKKSKNALPHLKDPQIVVIETKGGIVINAEIYVNCKYGYDIQCEIV 242 Query: 180 GD 185 G+ Sbjct: 243 GE 244
>NUAM_NEUCR (P24918) NADH-ubiquinone oxidoreductase 78 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-78KD) (CI-78KD) Length = 744 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 314 RPWEMKCIESFSPTDGCGVSVDLD 243 RPWE+K ES DG G ++ +D Sbjct: 247 RPWELKKTESIDVLDGLGSNIRVD 270
>GLGL3_ARATH (P55231) Glucose-1-phosphate adenylyltransferase large subunit 3,| chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) Length = 521 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 Query: 92 SPPFLPQRNQAKCTIPSFLFGHKCFM 169 SP FLP KC I + + H CF+ Sbjct: 384 SPRFLPPTKTEKCRIVNSVISHGCFL 409
>KAT1_RAT (Q08415) Kynurenine--oxoglutarate transaminase 1, mitochondrial| precursor (EC 2.6.1.7) (Kynurenine--oxoglutarate transaminase I) (Kynurenine aminotransferase I) (KATI) (Glutamine--phenylpyruvate transaminase) (EC 2.6.1.64) (Glutamine transaminas Length = 457 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/18 (61%), Positives = 11/18 (61%) Frame = -3 Query: 132 VHFAWFLWGRKGGEFWTR 79 VH W LWGRK G TR Sbjct: 10 VHLMWPLWGRKAGASLTR 27
>RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 948 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -3 Query: 372 RDRCQRSGINGLLQKPVTLAAL 307 + RC SG++ L KPVTL AL Sbjct: 911 KQRCLESGMDSCLSKPVTLDAL 932
>URE1_NOCFA (Q5YWR8) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 573 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +1 Query: 274 VGLKDSIHFISQGRQCDGLLEQPVYSRPLAPVPDI 378 V S+HF+S+ DGL E+ R L V D+ Sbjct: 489 VAAATSLHFVSEHALADGLAERLAVRRKLVAVKDV 523
>ETR1_MALDO (O81122) Ethylene receptor (EC 2.7.13.3)| Length = 741 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = -3 Query: 399 LAASSDDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQ 280 L S D ++ C R G++G++ KPV++ + + +L+ Sbjct: 694 LTGSIDKITKENCMRVGVDGVILKPVSVDKMRSVLSELLE 733
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -1 Query: 344 TGCSRSPSHWRPWEMKCIESFSPTDGCG 261 T C ++ + C+E F+P DGCG Sbjct: 672 TTCQQTCRSLSEADSHCLEGFAPVDGCG 699
>ETR1_PELHO (Q9XH58) Ethylene receptor 1 (EC 2.7.13.3) (PhETR1)| Length = 740 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/40 (25%), Positives = 26/40 (65%) Frame = -3 Query: 399 LAASSDDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQ 280 L +++D ++ C R G+ G++ KPV++ + + + ++L+ Sbjct: 694 LTSNADKVTKENCLRVGMEGVILKPVSVDKMRNVLSKLLE 733
>MAML1_HUMAN (Q92585) Mastermind-like protein 1 (Mam-1)| Length = 1016 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 4/27 (14%) Frame = +3 Query: 330 SGAARLFPTAGT----GPGHCRPSSLP 398 S R+FP AG GPGH SSLP Sbjct: 706 SSCPRVFPQAGNLMPMGPGHASVSSLP 732
>MTGA_HAEIN (P44890) Monofunctional biosynthetic peptidoglycan transglycosylase| (EC 2.4.2.-) (Monofunctional TGase) Length = 246 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 60 MIKPKKT*SKIPHLFFPKGTKRNVQFLPFC 149 M K K+ + + HLF PK K+N Q + FC Sbjct: 1 MKKTKRIFTALSHLFSPKWWKKNWQRVVFC 30
>ETR2_PELHO (Q9XH57) Ethylene receptor 2 (EC 2.7.13.3) (PhETR2)| Length = 741 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = -3 Query: 399 LAASSDDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQ 280 L + D +D C R G+ G++ KPV++ + + + +L+ Sbjct: 694 LTGNIDQVTKDNCTRVGMEGVVLKPVSIDKMRNVLSNLLE 733 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,606,819 Number of Sequences: 219361 Number of extensions: 1124395 Number of successful extensions: 2750 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2704 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2750 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
