Clone Name | rbastl03a01 |
---|---|
Clone Library Name | barley_pub |
>gb|AY224466.1| Oryza sativa (japonica cultivar-group) isolate 23949 heat shock-related protein mRNA, partial cds Length = 1257 Score = 60.0 bits (30), Expect = 5e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 161 tcaattgctatctgtgaagtccgcgtcgataacatctccatcattgggtccctt 214 ||||||||| || ||||| ||||| || ||||||||||||||||| |||||||| Sbjct: 1257 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtccctt 1204 Score = 44.1 bits (22), Expect = 0.31 Identities = 58/70 (82%) Strand = Plus / Minus Query: 292 ggttgtacatagcctgtccgatctgcattacctcctggttcaaagcctccatggaagttt 351 |||||||||| ||||| ||||||||||| || |||| ||| ||||| |||||| | | Sbjct: 1135 ggttgtacatggcctggccgatctgcataacttcctcgtttaaagcagccatggcatcct 1076 Query: 352 tcatgctctg 361 |||||||||| Sbjct: 1075 tcatgctctg 1066
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 5e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 161 tcaattgctatctgtgaagtccgcgtcgataacatctccatcattgggtccctt 214 ||||||||| || ||||| ||||| || ||||||||||||||||| |||||||| Sbjct: 7990552 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtccctt 7990499 Score = 44.1 bits (22), Expect = 0.31 Identities = 58/70 (82%) Strand = Plus / Minus Query: 292 ggttgtacatagcctgtccgatctgcattacctcctggttcaaagcctccatggaagttt 351 |||||||||| ||||| ||||||||||| || |||| ||| ||||| |||||| | | Sbjct: 7990430 ggttgtacatggcctggccgatctgcataacttcctcgtttaaagcagccatggcatcct 7990371 Query: 352 tcatgctctg 361 |||||||||| Sbjct: 7990370 tcatgctctg 7990361
>dbj|AK121949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107J07, full insert sequence Length = 2462 Score = 60.0 bits (30), Expect = 5e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 161 tcaattgctatctgtgaagtccgcgtcgataacatctccatcattgggtccctt 214 ||||||||| || ||||| ||||| || ||||||||||||||||| |||||||| Sbjct: 2148 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtccctt 2095 Score = 44.1 bits (22), Expect = 0.31 Identities = 58/70 (82%) Strand = Plus / Minus Query: 292 ggttgtacatagcctgtccgatctgcattacctcctggttcaaagcctccatggaagttt 351 |||||||||| ||||| ||||||||||| || |||| ||| ||||| |||||| | | Sbjct: 2026 ggttgtacatggcctggccgatctgcataacttcctcgtttaaagcagccatggcatcct 1967 Query: 352 tcatgctctg 361 |||||||||| Sbjct: 1966 tcatgctctg 1957
>dbj|AK119535.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B03, full insert sequence Length = 1667 Score = 60.0 bits (30), Expect = 5e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 161 tcaattgctatctgtgaagtccgcgtcgataacatctccatcattgggtccctt 214 ||||||||| || ||||| ||||| || ||||||||||||||||| |||||||| Sbjct: 1377 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtccctt 1324 Score = 44.1 bits (22), Expect = 0.31 Identities = 58/70 (82%) Strand = Plus / Minus Query: 292 ggttgtacatagcctgtccgatctgcattacctcctggttcaaagcctccatggaagttt 351 |||||||||| ||||| ||||||||||| || |||| ||| ||||| |||||| | | Sbjct: 1255 ggttgtacatggcctggccgatctgcataacttcctcgtttaaagcagccatggcatcct 1196 Query: 352 tcatgctctg 361 |||||||||| Sbjct: 1195 tcatgctctg 1186
>dbj|AK072071.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L16, full insert sequence Length = 2201 Score = 60.0 bits (30), Expect = 5e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 161 tcaattgctatctgtgaagtccgcgtcgataacatctccatcattgggtccctt 214 ||||||||| || ||||| ||||| || ||||||||||||||||| |||||||| Sbjct: 1893 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtccctt 1840 Score = 44.1 bits (22), Expect = 0.31 Identities = 58/70 (82%) Strand = Plus / Minus Query: 292 ggttgtacatagcctgtccgatctgcattacctcctggttcaaagcctccatggaagttt 351 |||||||||| ||||| ||||||||||| || |||| ||| ||||| |||||| | | Sbjct: 1771 ggttgtacatggcctggccgatctgcataacttcctcgtttaaagcagccatggcatcct 1712 Query: 352 tcatgctctg 361 |||||||||| Sbjct: 1711 tcatgctctg 1702
>dbj|AK069937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038F19, full insert sequence Length = 1293 Score = 60.0 bits (30), Expect = 5e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 161 tcaattgctatctgtgaagtccgcgtcgataacatctccatcattgggtccctt 214 ||||||||| || ||||| ||||| || ||||||||||||||||| |||||||| Sbjct: 979 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtccctt 926 Score = 44.1 bits (22), Expect = 0.31 Identities = 58/70 (82%) Strand = Plus / Minus Query: 292 ggttgtacatagcctgtccgatctgcattacctcctggttcaaagcctccatggaagttt 351 |||||||||| ||||| ||||||||||| || |||| ||| ||||| |||||| | | Sbjct: 857 ggttgtacatggcctggccgatctgcataacttcctcgtttaaagcagccatggcatcct 798 Query: 352 tcatgctctg 361 |||||||||| Sbjct: 797 tcatgctctg 788
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 5e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 161 tcaattgctatctgtgaagtccgcgtcgataacatctccatcattgggtccctt 214 ||||||||| || ||||| ||||| || ||||||||||||||||| |||||||| Sbjct: 7990433 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtccctt 7990380 Score = 44.1 bits (22), Expect = 0.31 Identities = 58/70 (82%) Strand = Plus / Minus Query: 292 ggttgtacatagcctgtccgatctgcattacctcctggttcaaagcctccatggaagttt 351 |||||||||| ||||| ||||||||||| || |||| ||| ||||| |||||| | | Sbjct: 7990311 ggttgtacatggcctggccgatctgcataacttcctcgtttaaagcagccatggcatcct 7990252 Query: 352 tcatgctctg 361 |||||||||| Sbjct: 7990251 tcatgctctg 7990242
>emb|AL831810.4|CNS08CAN Oryza sativa chromosome 12, . BAC OSJNBa0077B14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153111 Score = 60.0 bits (30), Expect = 5e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 161 tcaattgctatctgtgaagtccgcgtcgataacatctccatcattgggtccctt 214 ||||||||| || ||||| ||||| || ||||||||||||||||| |||||||| Sbjct: 9618 tcaattgctgtcagtgaaatccgcatcaataacatctccatcattcggtccctt 9671 Score = 44.1 bits (22), Expect = 0.31 Identities = 40/46 (86%) Strand = Plus / Plus Query: 292 ggttgtacatagcctgtccgatctgcattacctcctggttcaaagc 337 |||||||||| ||||| ||||||||||| || |||| ||| ||||| Sbjct: 9740 ggttgtacatggcctggccgatctgcataacttcctcgtttaaagc 9785
>gb|BT016772.1| Zea mays clone Contig605 mRNA sequence Length = 1938 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 161 tcaattgctatctgtgaagtccgcgtcgataacatctccatcatt 205 |||||||||||||||||||||||| || || ||||| |||||||| Sbjct: 1682 tcaattgctatctgtgaagtccgcatcaatgacatccccatcatt 1638 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 292 ggttgtacatagcctgtccgatctgcattacctcctggttcaaagc 337 |||| ||||| ||||| || |||||||| ||||||||||||||||| Sbjct: 1563 ggttatacattgcctggccaatctgcatcacctcctggttcaaagc 1518
>gb|AY105690.1| Zea mays PCO065072 mRNA sequence Length = 1632 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 161 tcaattgctatctgtgaagtccgcgtcgataacatctccatcatt 205 ||||||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 1369 tcaattgctatctgtgaagtctgcgtcaatgacatccccatcatt 1325 Score = 44.1 bits (22), Expect = 0.31 Identities = 37/42 (88%) Strand = Plus / Minus Query: 292 ggttgtacatagcctgtccgatctgcattacctcctggttca 333 |||| ||||| ||||| || |||||||| ||||||||||||| Sbjct: 1250 ggttatacattgcctggccaatctgcatcacctcctggttca 1209
>gb|BT024111.1| Zea mays clone EL01N0516B01 mRNA sequence Length = 2060 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Minus Query: 292 ggttgtacatagcctgtccgatctgcattacctcctggttcaaagc 337 |||| ||||| ||||| || |||||||| ||||||||||||||||| Sbjct: 1727 ggttatacattgcctggccaatctgcatcacctcctggttcaaagc 1682 Score = 48.1 bits (24), Expect = 0.020 Identities = 36/40 (90%) Strand = Plus / Minus Query: 166 tgctatctgtgaagtccgcgtcgataacatctccatcatt 205 ||||||||||||||||||| || || ||||| |||||||| Sbjct: 1841 tgctatctgtgaagtccgcatcaatgacatccccatcatt 1802
>gb|AC090654.38| Mus musculus strain C57BL/6J clone rp23-329p1 map 14, complete sequence Length = 204267 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 tacctcctggttcaaagcctc 340 ||||||||||||||||||||| Sbjct: 11959 tacctcctggttcaaagcctc 11979
>gb|AC171006.3| Gallus gallus BAC clone CH261-172K16 from chromosome ul, complete sequence Length = 206511 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 cctccatggaagttttcatgc 357 ||||||||||||||||||||| Sbjct: 154730 cctccatggaagttttcatgc 154750
>gb|AC090659.19| Mus musculus strain C57BL/6J chromosome 14 clone rp23-473n18, complete sequence Length = 194320 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 tacctcctggttcaaagcctc 340 ||||||||||||||||||||| Sbjct: 127167 tacctcctggttcaaagcctc 127187
>gb|BT018142.1| Zea mays clone EL01N0555B07.c mRNA sequence Length = 1284 Score = 40.1 bits (20), Expect = 4.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 303 gcctgtccgatctgcattacctcctggttcaa 334 ||||| ||||||||||| || ||||||||||| Sbjct: 960 gcctgcccgatctgcatgacttcctggttcaa 929
>gb|AC154882.11| Mus musculus chromosome 3, clone RP24-187P10, complete sequence Length = 175586 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 tgtatcactcaccatgatcc 148 |||||||||||||||||||| Sbjct: 43788 tgtatcactcaccatgatcc 43807
>gb|BC003241.1| Mus musculus cleavage stimulation factor, 3' pre-RNA, subunit 3, mRNA (cDNA clone MGC:6373 IMAGE:3498424), complete cds Length = 2840 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 caaatttcatatactgaata 46 |||||||||||||||||||| Sbjct: 1306 caaatttcatatactgaata 1287
>ref|NM_145529.1| Mus musculus cleavage stimulation factor, 3' pre-RNA, subunit 3 (Cstf3), transcript variant 1, mRNA Length = 2840 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 caaatttcatatactgaata 46 |||||||||||||||||||| Sbjct: 1306 caaatttcatatactgaata 1287
>gb|AC024475.15| Homo sapiens chromosome 11, clone RP11-702F3, complete sequence Length = 191960 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 taaaatgccactcaaaatag 116 |||||||||||||||||||| Sbjct: 108660 taaaatgccactcaaaatag 108641
>emb|AL137059.20| Human DNA sequence from clone RP11-125I23 on chromosome 13 Contains the MTIF3 gene for mitochondrial translational initiation factor 3, the GTF3A gene for general transcription factor IIIA (AP2, TFIIIA) and two CpG islands, complete sequence Length = 166141 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ttgcaaatacatggagccaa 72 |||||||||||||||||||| Sbjct: 106531 ttgcaaatacatggagccaa 106512
>gb|AC132164.1| Drosophila pseudoobscura FOSMID DPSF1-548A11 (Children's Hospital Oakland Research Institute Drosophila pseudoobscura FOSMID Library) complete sequence Length = 42098 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 agagccagcaccaccagcac 285 |||||||||||||||||||| Sbjct: 15698 agagccagcaccaccagcac 15679
>dbj|AK124468.1| Homo sapiens cDNA FLJ42477 fis, clone BRACE2031527 Length = 2110 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ttgcaaatacatggagccaa 72 |||||||||||||||||||| Sbjct: 557 ttgcaaatacatggagccaa 538
>dbj|AK159180.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420007H11 product:cleavage stimulation factor, 3' pre-RNA, subunit 3, full insert sequence Length = 2648 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 caaatttcatatactgaata 46 |||||||||||||||||||| Sbjct: 1148 caaatttcatatactgaata 1129
>emb|AL844603.5| Mouse DNA sequence from clone RP24-334I20 on chromosome 2, complete sequence Length = 144391 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 caaatttcatatactgaata 46 |||||||||||||||||||| Sbjct: 88083 caaatttcatatactgaata 88064
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 gccagcaccaccagcactag 288 |||||||||||||||||||| Sbjct: 1000007 gccagcaccaccagcactag 1000026
>gb|AY104911.1| Zea mays PCO138533 mRNA sequence Length = 1751 Score = 40.1 bits (20), Expect = 4.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 303 gcctgtccgatctgcattacctcctggttcaa 334 ||||| ||||||||||| || ||||||||||| Sbjct: 1380 gcctgcccgatctgcatgacttcctggttcaa 1349
>gb|AC164412.9| Mus musculus chromosome 3, clone RP24-360M7, complete sequence Length = 172583 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 tgtatcactcaccatgatcc 148 |||||||||||||||||||| Sbjct: 157554 tgtatcactcaccatgatcc 157573
>emb|AL627236.11| Mouse DNA sequence from clone RP23-384G12 on chromosome 4, complete sequence Length = 201752 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 tcaaagcctccatggaagtt 350 |||||||||||||||||||| Sbjct: 168847 tcaaagcctccatggaagtt 168828
>emb|AL356022.3|CNS05TDC Human chromosome 14 DNA sequence BAC R-163M18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 137723 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 agccaagatacaaaaataac 86 |||||||||||||||||||| Sbjct: 83049 agccaagatacaaaaataac 83030 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,467,111 Number of Sequences: 3902068 Number of extensions: 3467111 Number of successful extensions: 66444 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66363 Number of HSP's gapped (non-prelim): 81 length of query: 361 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 339 effective length of database: 17,147,199,772 effective search space: 5812900722708 effective search space used: 5812900722708 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)