ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02h11 |
|---|---|
| Clone Library Name | barley_pub |
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 95.5 bits (236), Expect = 3e-20 Identities = 42/51 (82%), Positives = 48/51 (94%) Frame = -1 Query: 402 KGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 250 KGLMGRQNRTPTIV+VW+VLLASIFSLLWVR+DPFT+R+ GP+I CGINC Sbjct: 1015 KGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDILECGINC 1065
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 89.0 bits (219), Expect = 2e-18 Identities = 38/51 (74%), Positives = 44/51 (86%) Frame = -1 Query: 402 KGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 250 KGLMGRQNRTPTIV++W+VLLASIFSLLWVR+DPF + GP+ CGINC Sbjct: 976 KGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTSKCGINC 1026
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 84.0 bits (206), Expect = 8e-17 Identities = 34/51 (66%), Positives = 45/51 (88%) Frame = -1 Query: 402 KGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 250 KGLMGRQNRTPTIV++W++LLASIFSL+WVR+DPF + GP ++ CG++C Sbjct: 999 KGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPLLKQCGVDC 1049
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 71.2 bits (173), Expect = 5e-13 Identities = 29/51 (56%), Positives = 43/51 (84%) Frame = -1 Query: 402 KGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 250 KGL+G+Q+R PTI++VW++LLASI +LLWVRV+PF + GP ++ CG++C Sbjct: 1034 KGLLGKQDRMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1083
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 71.2 bits (173), Expect = 5e-13 Identities = 28/51 (54%), Positives = 43/51 (84%) Frame = -1 Query: 402 KGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 250 KG++G+Q++ PTI++VW++LLASI +LLWVRV+PF + GP ++ CG+NC Sbjct: 1033 KGMLGKQDKMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPVLEICGLNC 1082
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 70.9 bits (172), Expect = 7e-13 Identities = 29/51 (56%), Positives = 44/51 (86%) Frame = -1 Query: 402 KGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 250 KGL+G+Q+R PTI++VW++LLASI +LLWVRV+PF ++ GP ++ CG++C Sbjct: 1037 KGLLGKQDRVPTIILVWSILLASILTLLWVRVNPFVSK-DGPVLEICGLDC 1086
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 70.9 bits (172), Expect = 7e-13 Identities = 29/51 (56%), Positives = 43/51 (84%) Frame = -1 Query: 402 KGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 250 KGL+G+Q+R PTI++VW++LLASI +LLWVRV+PF + GP ++ CG++C Sbjct: 1019 KGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1068
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 70.5 bits (171), Expect = 9e-13 Identities = 34/43 (79%), Positives = 38/43 (88%) Frame = -1 Query: 402 KGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPN 274 KGL+GRQNRTPTIVIVW+VLLASIFSLLWVR++PF A PN Sbjct: 1030 KGLLGRQNRTPTIVIVWSVLLASIFSLLWVRINPFVD--ANPN 1070
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 68.9 bits (167), Expect = 3e-12 Identities = 30/51 (58%), Positives = 42/51 (82%) Frame = -1 Query: 402 KGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTCGINC 250 KGLMGRQNRTPTIVI+W++LLAS+FSL+WVR++PF ++ + + +NC Sbjct: 933 KGLMGRQNRTPTIVILWSILLASVFSLVWVRINPFVSK---TDTTSLSLNC 980
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 68.2 bits (165), Expect = 5e-12 Identities = 30/37 (81%), Positives = 35/37 (94%) Frame = -1 Query: 402 KGLMGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTT 292 KGL+GRQNRTPTIVIVW+ LLASIFSLLWVR++PF + Sbjct: 1017 KGLLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVS 1053
>RS7_PYRAE (Q8ZYK5) 30S ribosomal protein S7P| Length = 223 Score = 32.7 bits (73), Expect = 0.21 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%) Frame = +1 Query: 46 RFLCSKKRA*PHENGRWSITSIYKCVFAILTTFSNVVIR-----NPKHKFSLAPRVVSRS 210 R++C K PH GR+ T K I+ N+++R KHK A +V R+ Sbjct: 59 RYICLKPVILPHTEGRYQNTRFGKARIPIVERLINLMMRPGRNTGKKHK---AYNIVKRA 115 Query: 211 --LLYFLSLQSPIFLAVDA 261 L+Y+ + ++P+ + +DA Sbjct: 116 FDLIYYKTGKNPLQVFIDA 134
>NOLA2_BOVIN (Q5E950) H/ACA ribonucleoprotein complex subunit 2 (Nucleolar| protein family A member 2) Length = 153 Score = 30.8 bits (68), Expect = 0.81 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 3/96 (3%) Frame = -2 Query: 323 CCGFVLIHSLHVSLAQISKPVAS--TARKMGDCRDRKYNSDRLTTRGARENLCLGLRITT 150 CCG H L V+L I++P+AS RK+ C +K + RG +E + I Sbjct: 18 CCGERTYHELLVNLNPIAQPLASRRLTRKLYKC-IKKAVKQKQIRRGVKE---VQKFINK 73 Query: 149 FEK-VVKIAKTHL*IDVIDHLPFS*G*ALFLEQRNL 45 EK ++ +A L I+V HLP + E RNL Sbjct: 74 GEKGIMVLAGDTLPIEVYCHLP------VMCEDRNL 103
>PATL1_ARATH (Q56WK6) Patellin-1| Length = 573 Score = 28.9 bits (63), Expect = 3.1 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = -3 Query: 232 VETENITVID*QPVEPEKIYVWG 164 V E + V + +PVEPE++ +WG Sbjct: 224 VVVETVAVAEAEPVEPEEVSIWG 246
>Y1433_SYNY3 (P74217) Hypothetical protein sll1433| Length = 524 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = +1 Query: 130 ILTTFSNVVIRNPKHKFSLAPRVVSRSLLY----FLSLQSPIFLAVDATGLDIWASETCS 297 +LT ++ P+ KF LA RV + + + L+ Q L VDA L + C Sbjct: 448 VLTGLMGGILAQPE-KFDLAQRVATAAWWHAQAGILASQQRTILGVDAQHLAEYLIPACR 506 Query: 298 EWINTN 315 +W+ N Sbjct: 507 QWLGPN 512
>VG7_SPV4 (P11339) Gene 7 protein| Length = 48 Score = 28.1 bits (61), Expect = 5.2 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = -1 Query: 366 IVIVWAVLLASIFSLLW 316 +V+VW +LL+ +F LLW Sbjct: 19 LVVVWIILLSEVFVLLW 35
>PSTB_DESPS (Q6AM16) Phosphate import ATP-binding protein pstB (EC 3.6.3.27)| (Phosphate-transporting ATPase) (ABC phosphate transporter) Length = 293 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Frame = -2 Query: 305 IHSLHVSLAQISKPVASTARKMG---DCRDRKYNSDRLTTRGARENLCLGLRITTFEKVV 135 IH L A +S+ V S+ K G + +DR + S + G ++ LC+ I +V+ Sbjct: 152 IHGLATGKADLSEIVESSLIKAGLWDEVKDRLHESGTSLSGGQQQRLCIARAIAVSPEVI 211
>HLDE_STRCO (Q9Z5B5) Bifunctional protein hldE [Includes: D-beta-D-heptose| 7-phosphate kinase (EC 2.7.1.-) (D-beta-D-heptose 7-phosphotransferase); D-beta-D-heptose 1-phosphate adenosyltransferase (EC 2.7.7.-)] Length = 463 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = -2 Query: 314 FVLIHSLHVSLAQISKPVASTARKMGDCRDRKYNSDRLTTRG 189 F L+H+ HV L Q AR++GDC NSD RG Sbjct: 336 FDLLHAGHVGLLQ-------AARRLGDCLVVCVNSDASVRRG 370
>PAR1_MOUSE (P30558) Proteinase-activated receptor 1 precursor (PAR-1)| (Thrombin receptor) Length = 430 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -1 Query: 393 MGRQNRTPTIVIVWAVLLASIFSLLWVRVDPFTTRLAGPNIQTC 262 +GR N T V++W + + + LL + TTR+ G NI TC Sbjct: 221 LGRANFT--CVVIWVMAIMGVVPLL---LKEQTTRVPGLNITTC 259
>YCF30_CYAPA (P48271) Putative HTH-type transcriptional regulator ycf30| Length = 324 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 154 VIRNPKHKFSLAPRVVSRSLLYFLSLQSP 240 +I NP S A R+ S +L SLQSP Sbjct: 283 IITNPNRYHSQAARIFSEEILTMFSLQSP 311
>PUF3_YEAST (Q07807) Protein PUF3| Length = 879 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +1 Query: 130 ILTTFSNVVIRNPKHKFSLAPRVVSRSLLYFLSLQSPIFLA 252 I+ T +N V+ KHKF A VV +S+LY Q + ++ Sbjct: 757 IIETVANNVVEYSKHKF--ASNVVEKSILYGSKNQKDLIIS 795
>SC5A5_MOUSE (Q99PN0) Sodium/iodide cotransporter (Na(+)/I(-) cotransporter)| (Sodium-iodide symporter) (Na(+)/I(-)-symporter) Length = 618 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 21/91 (23%) Frame = +1 Query: 76 PHENGRWSITSIYKCVFAILTTFSNVVIRNP--------------KHKFSLAPRV----- 198 P E R+ + ++ CV +L + ++ P + +FS A R+ Sbjct: 77 PAEAARYGLKFLWMCVGQLLNSLLTALLFLPIFYRLGLTSTYQYLELRFSRAVRLCGTLQ 136 Query: 199 --VSRSLLYFLSLQSPIFLAVDATGLDIWAS 285 V+ L + + +P + TGLDIWAS Sbjct: 137 YLVATMLYTGIVIYAPALILNQVTGLDIWAS 167
>EXT2_HUMAN (Q93063) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXT2) (Multiple exostoses protein Length = 718 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Frame = +1 Query: 157 IRNPKHKFSLAPRVVSRSLLYFLSLQSPIFLAVDATGL-DIW--ASETCSEW 303 IR P +L PR+ ++ +Y+++L S + L + ATG+ W + E+ ++W Sbjct: 9 IRGP----ALIPRMKTKHRIYYITLFSIVLLGLIATGMFQFWPHSIESSNDW 56 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,315,184 Number of Sequences: 219361 Number of extensions: 1170308 Number of successful extensions: 2525 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2524 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
