ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02h10 |
|---|---|
| Clone Library Name | barley_pub |
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 33.5 bits (75), Expect = 0.13 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = -3 Query: 395 HTCLLSGVFIGNVKVLVRLSFGIS-GPKEVAMKLAVRSDDPEVSDRI 258 HT LSGVF G VL + + + +AM + ++S++P V+D + Sbjct: 819 HTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNIIIKSNEPLVADLV 865
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 377 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 270 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 377 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 270 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 377 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 270 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 377 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 270 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 377 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 270 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -3 Query: 377 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 270 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>SLS1_YEAST (P42900) Sigma-like sequence protein 1, mitochondrial precursor| (Protein SLS1) Length = 643 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/44 (43%), Positives = 26/44 (59%) Frame = +1 Query: 238 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPM 369 P +IS LS+T G S +ASF ++ F PLI ++K LPM Sbjct: 386 PSDSISQSLSITLGHSLQSASF-SSIFQPLIHKSFISKLLNLPM 428
>NUGC_SOYBN (P31174) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 158 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 377 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 270 G + +V L RL +GI P+EV +K+ V +P + Sbjct: 62 GGLLASVYHLTRLEYGIDQPEEVCIKIFVARKNPRI 97
>YPJA_BACSU (P54392) Hypothetical protein ypjA| Length = 185 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -1 Query: 202 FVVLAFHLVKA-QGISINYSIRLCVSWFSRWNPTVVAASFLFNAVKQFLVDLEPHYFLIS 26 ++++A H A QG+ + R FS W+ + A L N V +L D+ P Y ++S Sbjct: 95 YMLIASHFAMAVQGVLYSPYFR-----FSFWHLAIAAVWTLHNDVIDYLFDMMPQYSMLS 149
>VGLM_SEOUR (P28729) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1134 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/53 (28%), Positives = 22/53 (41%) Frame = -1 Query: 229 TSKSFLVDLFVVLAFHLVKAQGISINYSIRLCVSWFSRWNPTVVAASFLFNAV 71 T + F++L QG+ I +I LCV F W + +F F V Sbjct: 442 TKTLVMASAFILLQVSFHCYQGLPIAIAIELCVPGFHGWATAALLITFCFGWV 494
>TRPM6_MOUSE (Q8CIR4) Transient receptor potential cation channel subfamily M| member 6 (EC 2.7.11.1) (Channel kinase 2) (Melastatin-related TRP cation channel 6) Length = 2028 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +2 Query: 176 HQMESQNNKKVNQKTLAGSFSHLQQFH 256 H E Q +++ Q+T A SH++Q H Sbjct: 1318 HVREEQEEREMEQRTTASGISHVRQAH 1344
>REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-)| Length = 757 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +1 Query: 238 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTP 378 PF T+S SL + +S T++ TS P+ TKT + P +TP Sbjct: 466 PFRTVSTSESLDTSTSTSTSTSATTS----APSAKSTKTASRPASTP 508
>CDPK1_PLAFK (P62343) Calcium-dependent protein kinase 1 (EC 2.7.11.1) (PfCPK)| (PfCDPK1) Length = 523 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +2 Query: 188 SQNNKKVNQKTLAGSFSHLQQFHGS 262 + N K +QKTL G+ S++++F GS Sbjct: 328 ANNINKSDQKTLCGALSNMRKFEGS 352
>CDPK1_PLAF7 (P62344) Calcium-dependent protein kinase 1 (EC 2.7.11.1)| Length = 523 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +2 Query: 188 SQNNKKVNQKTLAGSFSHLQQFHGS 262 + N K +QKTL G+ S++++F GS Sbjct: 328 ANNINKSDQKTLCGALSNMRKFEGS 352
>SYS_STAES (Q8CU95) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 428 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -3 Query: 320 PKEVAMKLAVRSDDPEVSDRIHEI 249 P++V K+ +R DDP+V D++ E+ Sbjct: 11 PEKVKSKIELRGDDPKVVDQVLEL 34
>SYS_STAEQ (Q5HK07) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 428 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -3 Query: 320 PKEVAMKLAVRSDDPEVSDRIHEI 249 P++V K+ +R DDP+V D++ E+ Sbjct: 11 PEKVKSKIELRGDDPKVVDQVLEL 34
>LBD41_ARATH (Q9M886) LOB domain protein 41| Length = 263 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -1 Query: 178 VKAQGISINYSIRLCVSWF----SRWNPTVVAASFLFNAVKQFLVDLEPHYFLISSLTSI 11 V +G S + SIR C++W ++ N TV A F A L++ P++ S+ Sbjct: 10 VLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSL 69 Query: 10 VH 5 +H Sbjct: 70 LH 71
>CDPK1_PLAYO (Q7RAH3) Calcium-dependent protein kinase 1 (EC 2.7.11.1)| Length = 534 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +2 Query: 188 SQNNKKVNQKTLAGSFSHLQQFHGS 262 + N K +QKTL G+ S++++F GS Sbjct: 327 ANNINKSDQKTLCGALSNMRKFEGS 351 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,655,976 Number of Sequences: 219361 Number of extensions: 851633 Number of successful extensions: 1863 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1843 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1863 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
