ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02h08 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) (High pigmentation protein 1) Length = 1090 Score = 78.6 bits (192), Expect = 4e-15 Identities = 37/44 (84%), Positives = 43/44 (97%) Frame = -1 Query: 307 NFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 176 NFLDGDLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1047 NFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1090
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding protein| 1) Length = 1095 Score = 78.6 bits (192), Expect = 4e-15 Identities = 37/44 (84%), Positives = 43/44 (97%) Frame = -1 Query: 307 NFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 176 NFLDGDLIESFLDL+R++MEE++KAM+VPVEEL KRVEELTRLH Sbjct: 1052 NFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1095
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 73.2 bits (178), Expect = 2e-13 Identities = 35/44 (79%), Positives = 41/44 (93%) Frame = -1 Query: 307 NFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 176 NFLDGDLIESFLDL+R+KME+++K+M V VEEL KRVEELTRLH Sbjct: 1045 NFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 70.1 bits (170), Expect = 1e-12 Identities = 34/43 (79%), Positives = 38/43 (88%) Frame = -1 Query: 304 FLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 176 +LDGDLIESFLDL+R KMEE++K M V VEEL KRVEELTRLH Sbjct: 1046 YLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 46.6 bits (109), Expect = 2e-05 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 10/53 (18%) Frame = -1 Query: 304 FLDGDLIESFLDLNRSKMEEVAKAM----------AVPVEELSKRVEELTRLH 176 F+DGDLIESFLD++R KM+EV + ++L K VEELTR+H Sbjct: 1088 FIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 46.6 bits (109), Expect = 2e-05 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 10/53 (18%) Frame = -1 Query: 304 FLDGDLIESFLDLNRSKMEEVAKAM----------AVPVEELSKRVEELTRLH 176 F+DGDLIESFLD++R KM+EV + ++L K VEELTR+H Sbjct: 1088 FIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 31.2 bits (69), Expect = 0.69 Identities = 13/40 (32%), Positives = 26/40 (65%) Frame = -1 Query: 307 NFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 188 N +DGDL+E FL+ + S E+++ + V ++ K++ +L Sbjct: 1174 NVIDGDLLERFLEFDISLKIEISRKLNKSVNDIEKKLIDL 1213
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 30.8 bits (68), Expect = 0.91 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = -1 Query: 307 NFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEEL 188 N +DGDLIE F +L++S + + E+ K++ E+ Sbjct: 1211 NVMDGDLIERFYELSQSMKIRIGTELNRTPREIEKKISEM 1250
>RSE1_YEAST (Q04693) Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi| transport factor 1) (Spliceosome-associated protein 130) Length = 1361 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%) Frame = -1 Query: 301 LDGDLIESFLDLNRSKMEEVAKAM-AVPVEELSKRVEEL 188 +DGDL E+FL L+ ++ E +AK + +V VE++ + + E+ Sbjct: 1318 IDGDLCENFLRLSLNEQEFLAKNLKSVQVEDIIQTINEV 1356
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = -1 Query: 301 LDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRL 179 +DGDLI S+ + S+ EVAK + EE+ + E+ RL Sbjct: 1411 IDGDLIWSYRLMANSERNEVAKKIGTRTEEILGDLLEIERL 1451
>IFNG_SIGHI (Q9QXX2) Interferon gamma precursor (IFN-gamma)| Length = 170 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Frame = -1 Query: 307 NFLDGDLIESFLDLNRSKMEEVAKAMAVPVEELS---KRVEEL 188 N + DLI +F + +R KM++ K +PV +L K V EL Sbjct: 91 NTIRADLIVNFFNNSREKMDDFIKLTTIPVNDLQVQRKAVNEL 133
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%) Frame = -1 Query: 307 NFLDGDLIESFLDLNRSKMEEVAKA------MAVPVEELSKRVEELTRLH 176 + +DG LIES L L + E+ + + V++L +E L +LH Sbjct: 1022 DLIDGSLIESILGLREPILNEIVNGGHEGTKLDISVQDLKSIIENLEKLH 1071
>APOL4_HUMAN (Q9BPW4) Apolipoprotein-L4 precursor (Apolipoprotein L-IV)| (ApoL-IV) Length = 351 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = -1 Query: 292 DLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 176 +L++ LDL++ E A+++ +EL + + ELT +H Sbjct: 307 NLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIH 345
>G168_PARPR (P17053) G surface protein, allelic form 168 precursor| Length = 2704 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +3 Query: 75 ATNTCRGSFSGRQRFTTQRKRTNKTGCTRHGAT*C 179 A TC + G +++ K GCT +GAT C Sbjct: 1637 AATTCDAVYLGTGNYSSANCNEMKAGCTNNGATAC 1671
>MODA_MYCTU (P0A5Y0) Molybdate-binding protein precursor| Length = 261 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 286 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 176 I SF DL R + V +VP ++R+E+ T +H Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169
>MODA_MYCBO (P0A5Y1) Molybdate-binding protein precursor| Length = 261 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 286 IESFLDLNRSKMEEVAKAMAVPVEELSKRVEELTRLH 176 I SF DL R + V +VP ++R+E+ T +H Sbjct: 133 IRSFADLTRPGLNVVVCQPSVPCGSATRRIEDATGIH 169
>MPPA1_ARATH (Q9ZU25) Probable mitochondrial-processing peptidase alpha subunit| 1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1) Length = 503 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -1 Query: 301 LDGDLIESFLDLNRSKMEEVAKAMAVPVEELSKRVEELT 185 L+G+L+E F+ N + V A V EEL K E LT Sbjct: 240 LNGELLEEFMTENFTAARMVLAASGVEHEELLKVAEPLT 278
>Y429_METAC (Q8TTK2) UPF0272 protein MA0429| Length = 396 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -1 Query: 250 EEVAKAMAVPVEELSKRVEELTR 182 +++AKA +PV E+ +R EE+ R Sbjct: 370 KKIAKASGIPVREIMRRTEEVAR 392 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,702,277 Number of Sequences: 219361 Number of extensions: 471504 Number of successful extensions: 1700 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1667 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1697 length of database: 80,573,946 effective HSP length: 77 effective length of database: 63,683,149 effective search space used: 1528395576 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
