ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059571.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
2gb|AY109120.1| Zea mays PCO076782 mRNA sequence 111 2e-21
3ref|XM_466826.1| Oryza sativa (japonica cultivar-group), mRNA 76 1e-10
4dbj|AK120845.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
5dbj|AK058534.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
6ref|XM_473186.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
7emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4,... 62 2e-06
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
10dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
11gb|AC102343.8| Mus musculus chromosome 3, clone RP23-254H18, com... 44 0.38
12gb|AC165238.5| Mus musculus chromosome 3, clone RP23-466A3, comp... 44 0.38
13dbj|AK134359.1| Mus musculus 13 days embryo male testis cDNA, RI... 44 0.38
14gb|AY262256.1| Danio rerio delta opioid receptor (or4) mRNA, com... 42 1.5
15emb|AL512593.9| Human DNA sequence from clone RP11-508N12 on chr... 42 1.5
16emb|CR376827.6| Zebrafish DNA sequence from clone CH211-154C21 i... 42 1.5
17gb|AC155294.2| Mus musculus BAC clone RP24-328F24 from chromosom... 42 1.5
18gb|AC158798.7| Mus musculus BAC RP23-166F14 (Roswell Park Cance... 42 1.5
19emb|CR855299.12| Zebrafish DNA sequence from clone CH211-199C22 ... 42 1.5
20emb|AL928550.20| Mouse DNA sequence from clone RP23-272I15 on ch... 42 1.5
21ref|NM_212755.1| Danio rerio wu:fb12g05 (wu:fb12g05), mRNA 42 1.5
22emb|AL844140.7| Mouse DNA sequence from clone RP23-428B12 on chr... 42 1.5
23gb|BC077911.1| Xenopus laevis thromboxane A2 receptor, mRNA (cDN... 40 5.9
24ref|XM_864059.1| PREDICTED: Bos taurus similar to DNA polymerase... 40 5.9
25gb|AC122527.3| Mus musculus BAC clone RP24-502E10 from chromosom... 40 5.9
26emb|CR956649.3| Pig DNA sequence from clone PigE-92E11 on chromo... 40 5.9
27gb|AC125171.4| Mus musculus BAC clone RP24-475M20 from chromosom... 40 5.9
28gb|AC004549.1| Homo sapiens BAC clone CTA-459N13 from 7, complet... 40 5.9
29emb|AL672045.11| Human DNA sequence from clone RP11-577O19 on ch... 40 5.9
30emb|X99701.1|XLUTROPHI X.laevis mRNA for utrophin 40 5.9
31emb|BX005414.13| Zebrafish DNA sequence from clone DKEY-21C19 in... 40 5.9
32gb|AC021749.6| Homo sapiens chromosome 11, clone RP11-810F22, co... 40 5.9
33gb|AC027806.8| Homo sapiens chromosome 11, clone RP11-328C11, co... 40 5.9
34gb|AC154732.3| Mus musculus BAC clone RP24-380F18 from chromosom... 40 5.9
35gb|AE001577.1| Borrelia burgdorferi B31 plasmid cp32-4, complete... 40 5.9
36gb|AC079249.5| Homo sapiens BAC clone RP11-60F10 from 2, complet... 40 5.9
37gb|AC087241.11| Homo sapiens 12 BAC RP11-268P4 (Roswell Park Can... 40 5.9
38emb|BX649502.4| Zebrafish DNA sequence from clone DKEY-204F11 in... 40 5.9
39emb|CT030142.10| Mouse DNA sequence from clone RP23-422H22 on ch... 40 5.9
40gb|AC157768.4| Mus musculus chromosome 1, clone RP24-308M3, comp... 40 5.9
41gb|AC104896.13| Mus musculus chromosome 1, clone RP23-299F18, co... 40 5.9
42emb|AL683809.7| Mouse DNA sequence from clone RP23-440B21 on chr... 40 5.9 
>dbj|AK059571.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A02, full
           insert sequence
          Length = 1057

 Score =  151 bits (76), Expect = 2e-33
 Identities = 172/204 (84%)
 Strand = Plus / Minus

                                                                       
Query: 234 aagcaaattcttctagttctcgacccattcctatctttctgacccttgtggaaagctgag 293
           ||||| || |||||| |||| ||| |||| |||||| ||||||||||||  || || |||
Sbjct: 943 aagcagatgcttctacttctggacacatttctatctctctgacccttgtaaaaggcagag 884

                                                                       
Query: 294 atagcaagatgcaccgaagcatacgtcataaaagatgccagcaggacaccaccagcaacc 353
           ||||||| |||| | ||||| || |||||||||||||| ||||  |||||||||||||||
Sbjct: 883 atagcaatatgctctgaagcgtatgtcataaaagatgcaagcacaacaccaccagcaacc 824

                                                                       
Query: 354 atcaaccctagctttgcaaataatgcagttatacccaagatagttggtgaaaatacagta 413
           ||||| |||||||| |||||||||||||| | |||||||| ||| ||| | |||||||| 
Sbjct: 823 atcaatcctagcttcgcaaataatgcagtcacacccaagagagtcggtaacaatacagtg 764

                                   
Query: 414 actacagctatgactgccatccct 437
           || | |||||| | ||||||||||
Sbjct: 763 acaatagctataattgccatccct 740
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>gb|AY109120.1| Zea mays PCO076782 mRNA sequence
          Length = 774

 Score =  111 bits (56), Expect = 2e-21
 Identities = 143/172 (83%)
 Strand = Plus / Minus

                                                                       
Query: 243 cttctagttctcgacccattcctatctttctgacccttgtggaaagctgagatagcaaga 302
           |||| |||||| ||| ||||||| | ||| |||||||||| |||  ||||||| ||||||
Sbjct: 623 cttcgagttcttgacgcattcctgtatttttgacccttgttgaagactgagattgcaaga 564

                                                                       
Query: 303 tgcaccgaagcatacgtcataaaagatgccagcaggacaccaccagcaaccatcaaccct 362
           ||| |||  || || |||||||||||||||||||  | ||||||||| ||||| || |||
Sbjct: 563 tgctccgctgcgtatgtcataaaagatgccagcacaataccaccagcgaccattaatcct 504

                                                               
Query: 363 agctttgcaaataatgcagttatacccaagatagttggtgaaaatacagtaa 414
           |||||||  || ||||||||||| ||||||||||| ||| | | ||||||||
Sbjct: 503 agctttgtgaacaatgcagttatgcccaagatagtcggtaacagtacagtaa 452
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>ref|XM_466826.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1910

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 98/118 (83%)
 Strand = Plus / Minus

                                                                        
Query: 291  gagatagcaagatgcaccgaagcatacgtcataaaagatgccagcaggacaccaccagca 350
            |||||||| |||||| ||||||| || |||||||| ||||||| ||  || ||||| || 
Sbjct: 1728 gagatagctagatgctccgaagcgtatgtcataaacgatgccaacaccacgccacctgct 1669

                                                                      
Query: 351  accatcaaccctagctttgcaaataatgcagttatacccaagatagttggtgaaaata 408
            ||||||||||| ||||||||||| |  |||||||| |||| ||  |||||||| ||||
Sbjct: 1668 accatcaacccaagctttgcaaaaagagcagttattcccaggactgttggtgataata 1611
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>dbj|AK120845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022M20, full
            insert sequence
          Length = 1908

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 98/118 (83%)
 Strand = Plus / Minus

                                                                        
Query: 291  gagatagcaagatgcaccgaagcatacgtcataaaagatgccagcaggacaccaccagca 350
            |||||||| |||||| ||||||| || |||||||| ||||||| ||  || ||||| || 
Sbjct: 1725 gagatagctagatgctccgaagcgtatgtcataaacgatgccaacaccacgccacctgct 1666

                                                                      
Query: 351  accatcaaccctagctttgcaaataatgcagttatacccaagatagttggtgaaaata 408
            ||||||||||| ||||||||||| |  |||||||| |||| ||  |||||||| ||||
Sbjct: 1665 accatcaacccaagctttgcaaaaagagcagttattcccaggactgttggtgataata 1608
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>dbj|AK058534.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A11, full
           insert sequence
          Length = 1179

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 98/118 (83%)
 Strand = Plus / Minus

                                                                       
Query: 291 gagatagcaagatgcaccgaagcatacgtcataaaagatgccagcaggacaccaccagca 350
           |||||||| |||||| ||||||| || |||||||| ||||||| ||  || ||||| || 
Sbjct: 995 gagatagctagatgctccgaagcgtatgtcataaacgatgccaacaccacgccacctgct 936

                                                                     
Query: 351 accatcaaccctagctttgcaaataatgcagttatacccaagatagttggtgaaaata 408
           ||||||||||| ||||||||||| |  |||||||| |||| ||  |||||||| ||||
Sbjct: 935 accatcaacccaagctttgcaaaaagagcagttattcccaggactgttggtgataata 878
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>ref|XM_473186.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1407

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                        
Query: 291  gagatagcaagatgcaccgaagcatacgtcataaaagatgccagcaggacaccaccagca 350
            |||||||||| |||| | ||||| || |||||||||||||| ||||  ||||||||||| 
Sbjct: 1382 gagatagcaatatgctctgaagcgtatgtcataaaagatgcaagcacaacaccaccagc- 1324

                           
Query: 351  accatcaaccctagc 365
            |||||||| ||||||
Sbjct: 1323 accatcaatcctagc 1309
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>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02,
             complete sequence
          Length = 139080

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                         
Query: 291   gagatagcaagatgcaccgaagcatacgtcataaaagatgccagcaggacaccaccagca 350
             |||||||||| |||| | ||||| || |||||||||||||| ||||  ||||||||||| 
Sbjct: 56559 gagatagcaatatgctctgaagcgtatgtcataaaagatgcaagcacaacaccaccagc- 56501

                            
Query: 351   accatcaaccctagc 365
             |||||||| ||||||
Sbjct: 56500 accatcaatcctagc 56486



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                         
Query: 369   gcaaataatgcagttatacccaagatagttggtgaaaatacagtaactacagctatgact 428
             |||||||||||||| | |||||||| ||| ||| | |||||||| || | |||||| | |
Sbjct: 56063 gcaaataatgcagtcacacccaagagagtcggtaacaatacagtgacaatagctataatt 56004

                      
Query: 429   gccatccct 437
             |||||||||
Sbjct: 56003 gccatccct 55995
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 65/75 (86%), Gaps = 1/75 (1%)
 Strand = Plus / Minus

                                                                            
Query: 291      gagatagcaagatgcaccgaagcatacgtcataaaagatgccagcaggacaccaccagca 350
                |||||||||| |||| | ||||| || |||||||||||||| ||||  ||||||||||| 
Sbjct: 25839149 gagatagcaatatgctctgaagcgtatgtcataaaagatgcaagcacaacaccaccagc- 25839091

                               
Query: 351      accatcaaccctagc 365
                |||||||| ||||||
Sbjct: 25839090 accatcaatcctagc 25839076



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                            
Query: 369      gcaaataatgcagttatacccaagatagttggtgaaaatacagtaactacagctatgact 428
                |||||||||||||| | |||||||| ||| ||| | |||||||| || | |||||| | |
Sbjct: 25838653 gcaaataatgcagtcacacccaagagagtcggtaacaatacagtgacaatagctataatt 25838594

                         
Query: 429      gccatccct 437
                |||||||||
Sbjct: 25838593 gccatccct 25838585
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                            
Query: 291      gagatagcaagatgcaccgaagcatacgtcataaaagatgccagcaggacaccaccagca 350
                |||||||| |||||| ||||||| || |||||||| ||||||| ||  || ||||| || 
Sbjct: 24923271 gagatagctagatgctccgaagcgtatgtcataaacgatgccaacaccacgccacctgct 24923212

                           
Query: 351      accatcaaccc 361
                |||||||||||
Sbjct: 24923211 accatcaaccc 24923201
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>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1215B07
          Length = 165957

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                         
Query: 291   gagatagcaagatgcaccgaagcatacgtcataaaagatgccagcaggacaccaccagca 350
             |||||||| |||||| ||||||| || |||||||| ||||||| ||  || ||||| || 
Sbjct: 84554 gagatagctagatgctccgaagcgtatgtcataaacgatgccaacaccacgccacctgct 84495

                        
Query: 351   accatcaaccc 361
             |||||||||||
Sbjct: 84494 accatcaaccc 84484
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>gb|AC102343.8| Mus musculus chromosome 3, clone RP23-254H18, complete sequence
          Length = 220876

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 105    gatttggcatcaatgttacaaaaatg 130
              ||||||||| ||||||||||||||||
Sbjct: 169637 gatttggcaccaatgttacaaaaatg 169612
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>gb|AC165238.5| Mus musculus chromosome 3, clone RP23-466A3, complete sequence
          Length = 180939

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 105    gatttggcatcaatgttacaaaaatg 130
              ||||||||| ||||||||||||||||
Sbjct: 136471 gatttggcaccaatgttacaaaaatg 136496
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>dbj|AK134359.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030443B22
            product:unclassifiable, full insert sequence
          Length = 1742

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 138  tgtgtcaaaggaaactccaaaa 159
            ||||||||||||||||||||||
Sbjct: 999  tgtgtcaaaggaaactccaaaa 1020
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>gb|AY262256.1| Danio rerio delta opioid receptor (or4) mRNA, complete cds
          Length = 2364

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 326  agatgccagcaggacaccaccagca 350
            ||||||||||||| |||||||||||
Sbjct: 1009 agatgccagcaggccaccaccagca 985
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>emb|AL512593.9| Human DNA sequence from clone RP11-508N12 on chromosome 9 Contains two
              novel genes, the gene for a novel zinc finger protein
              (FLJ14960, KIAA1803), a ribosomal protein L7a (RPL7A)
              pseudogene and the 3' end of a novel gene, complete
              sequence
          Length = 148816

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    tgatttggcatcaatgttaca 124
              |||||||||||||||||||||
Sbjct: 140919 tgatttggcatcaatgttaca 140939
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>emb|CR376827.6| Zebrafish DNA sequence from clone CH211-154C21 in linkage group 14,
             complete sequence
          Length = 110290

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 179   acaacaacatgaactaaatcaataa 203
             ||||||||||||||||||| |||||
Sbjct: 93928 acaacaacatgaactaaataaataa 93952
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>gb|AC155294.2| Mus musculus BAC clone RP24-328F24 from chromosome 13, complete
             sequence
          Length = 174186

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   aatgttacaaaaatggaatat 136
             |||||||||||||||||||||
Sbjct: 71504 aatgttacaaaaatggaatat 71524
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>gb|AC158798.7| Mus musculus  BAC RP23-166F14 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 192795

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 246   ctagttctcgacccattcctatctttctg 274
             ||||||||  |||||||||||||||||||
Sbjct: 72400 ctagttctgtacccattcctatctttctg 72372
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>emb|CR855299.12| Zebrafish DNA sequence from clone CH211-199C22 in linkage group 16,
             complete sequence
          Length = 116933

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 326   agatgccagcaggacaccaccagca 350
             ||||||||||||| |||||||||||
Sbjct: 61379 agatgccagcaggccaccaccagca 61355
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>emb|AL928550.20| Mouse DNA sequence from clone RP23-272I15 on chromosome 2, complete
             sequence
          Length = 99786

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 226   aacaccaaaagcaaattcttc 246
             |||||||||||||||||||||
Sbjct: 62870 aacaccaaaagcaaattcttc 62850
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>ref|NM_212755.1| Danio rerio wu:fb12g05 (wu:fb12g05), mRNA
          Length = 2364

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 326  agatgccagcaggacaccaccagca 350
            ||||||||||||| |||||||||||
Sbjct: 1009 agatgccagcaggccaccaccagca 985
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>emb|AL844140.7| Mouse DNA sequence from clone RP23-428B12 on chromosome 4, complete
             sequence
          Length = 160681

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   tgatttggcatcaatgttaca 124
             |||||||||||||||||||||
Sbjct: 76661 tgatttggcatcaatgttaca 76681
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>gb|BC077911.1| Xenopus laevis thromboxane A2 receptor, mRNA (cDNA clone MGC:80805
            IMAGE:5513728), complete cds
          Length = 2549

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  ttacaaaaatggaatatctg 139
            ||||||||||||||||||||
Sbjct: 1621 ttacaaaaatggaatatctg 1640
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>ref|XM_864059.1| PREDICTED: Bos taurus similar to DNA polymerase kappa (DINB protein)
            (DINP), transcript variant 3 (LOC541218), mRNA
          Length = 3370

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 147  ggaaactccaaaatttcctcgtgt 170
            |||||||||||||| |||||||||
Sbjct: 2294 ggaaactccaaaatgtcctcgtgt 2317
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>gb|AC122527.3| Mus musculus BAC clone RP24-502E10 from chromosome 6, complete sequence
          Length = 180682

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   aaatgtacaacaacatgaactaaa 196
             |||||||||| |||||||||||||
Sbjct: 82693 aaatgtacaagaacatgaactaaa 82716
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>emb|CR956649.3| Pig DNA sequence from clone PigE-92E11 on chromosome 6, complete
             sequence
          Length = 127453

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    gttaaaatctatgtaccttt 104
             ||||||||||||||||||||
Sbjct: 50511 gttaaaatctatgtaccttt 50492
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>gb|AC125171.4| Mus musculus BAC clone RP24-475M20 from chromosome 6, complete sequence
          Length = 167590

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   aaatgtacaacaacatgaactaaa 196
             |||||||||| |||||||||||||
Sbjct: 97384 aaatgtacaagaacatgaactaaa 97407
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>gb|AC004549.1| Homo sapiens BAC clone CTA-459N13 from 7, complete sequence
          Length = 123891

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 10    acaaatgacttaaagtgttttaga 33
             |||||||||| |||||||||||||
Sbjct: 14802 acaaatgactaaaagtgttttaga 14825
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>emb|AL672045.11| Human DNA sequence from clone RP11-577O19 on chromosome 1 ras-related
            C3 botulinum toxin substrate 1 (rho family, small GTP
            binding protein Rac1) (RAC1) pseudogene, complete
            sequence
          Length = 180303

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 134  tatctgtgtcaaaggaaact 153
            ||||||||||||||||||||
Sbjct: 4834 tatctgtgtcaaaggaaact 4853
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>emb|X99701.1|XLUTROPHI X.laevis mRNA for utrophin
          Length = 1482

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 181 aacaacatgaactaaatcaa 200
           ||||||||||||||||||||
Sbjct: 146 aacaacatgaactaaatcaa 165
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>emb|BX005414.13| Zebrafish DNA sequence from clone DKEY-21C19 in linkage group 23,
              complete sequence
          Length = 236036

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     caaatgacttaaagtgtttt 30
              ||||||||||||||||||||
Sbjct: 166214 caaatgacttaaagtgtttt 166233
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>gb|AC021749.6| Homo sapiens chromosome 11, clone RP11-810F22, complete sequence
          Length = 193997

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   tttcctcgtgtaaaaatgta 179
             ||||||||||||||||||||
Sbjct: 45564 tttcctcgtgtaaaaatgta 45583
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>gb|AC027806.8| Homo sapiens chromosome 11, clone RP11-328C11, complete sequence
          Length = 176872

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   tttcctcgtgtaaaaatgta 179
             ||||||||||||||||||||
Sbjct: 21568 tttcctcgtgtaaaaatgta 21549
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>gb|AC154732.3| Mus musculus BAC clone RP24-380F18 from chromosome 12, complete sequence
          Length = 172458

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     cttaaagtgttttagagaca 37
              ||||||||||||||||||||
Sbjct: 139380 cttaaagtgttttagagaca 139399
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>gb|AE001577.1| Borrelia burgdorferi B31 plasmid cp32-4, complete sequence
          Length = 30299

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    ttttagagacaaaagattta 46
             ||||||||||||||||||||
Sbjct: 27031 ttttagagacaaaagattta 27050
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>gb|AC079249.5| Homo sapiens BAC clone RP11-60F10 from 2, complete sequence
          Length = 33532

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   acaaaaatggaatatctgtg 141
             ||||||||||||||||||||
Sbjct: 15274 acaaaaatggaatatctgtg 15293
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>gb|AC087241.11| Homo sapiens 12 BAC RP11-268P4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 146000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   actacaaacaccaaaagcaa 239
             ||||||||||||||||||||
Sbjct: 51092 actacaaacaccaaaagcaa 51111
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>emb|BX649502.4| Zebrafish DNA sequence from clone DKEY-204F11 in linkage group 3,
              complete sequence
          Length = 247387

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     aaagtgttttagagacaaaa 40
              ||||||||||||||||||||
Sbjct: 156564 aaagtgttttagagacaaaa 156545
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>emb|CT030142.10| Mouse DNA sequence from clone RP23-422H22 on chromosome 12, complete
              sequence
          Length = 203796

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     cttaaagtgttttagagaca 37
              ||||||||||||||||||||
Sbjct: 131343 cttaaagtgttttagagaca 131324
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>gb|AC157768.4| Mus musculus chromosome 1, clone RP24-308M3, complete sequence
          Length = 202770

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    tcaatgttacaaaaatggaa 133
              ||||||||||||||||||||
Sbjct: 119582 tcaatgttacaaaaatggaa 119563
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>gb|AC104896.13| Mus musculus chromosome 1, clone RP23-299F18, complete sequence
          Length = 184316

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    tcaatgttacaaaaatggaa 133
              ||||||||||||||||||||
Sbjct: 140452 tcaatgttacaaaaatggaa 140471
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>emb|AL683809.7| Mouse DNA sequence from clone RP23-440B21 on chromosome X, complete
             sequence
          Length = 213187

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 265   tatctttctgacccttgtgg 284
             ||||||||||||||||||||
Sbjct: 71160 tatctttctgacccttgtgg 71179


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,713,389
Number of Sequences: 3902068
Number of extensions: 4713389
Number of successful extensions: 124260
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124132
Number of HSP's gapped (non-prelim): 128
length of query: 437
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 415
effective length of database: 17,147,199,772
effective search space: 7116087905380
effective search space used: 7116087905380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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