ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018483.1| Zea mays clone EL01N0424D02.d mRNA sequence 88 3e-14
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
3dbj|AK120538.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
4dbj|AK103854.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 88 3e-14
6emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa... 88 3e-14
7dbj|AB011271.1| Oryza sativa (japonica cultivar-group) mRNA for ... 88 3e-14
8gb|AY106264.1| Zea mays PCO124599 mRNA sequence 84 4e-13
9ref|NM_194535.1| Oryza sativa (japonica cultivar-group) putative... 42 1.5
10ref|NM_183723.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
11ref|XM_469298.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
12ref|XM_471521.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
13gb|AC148393.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
14gb|AC146938.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
15gb|AC147802.2| Oryza sativa chromosome 3 BAC OSJNBb0013C14 genom... 42 1.5
16gb|AC037197.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
17gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
18gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
19gb|AC133335.4| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genom... 42 1.5
20gb|AC114896.5| Oryza sativa chromosome 3 BAC OSJNBa0091B22 genom... 42 1.5
21gb|AC119292.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
22gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
23gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
24gb|AC144452.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
25gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 1... 42 1.5
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.5
27gb|AC133337.5| Oryza sativa chromosome 3 BAC OSJNBa0023A13 genom... 42 1.5
28gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
29emb|AL731604.3|OSJN00247 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
30gb|AC119149.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
31gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica culti... 42 1.5
32dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
33dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
34dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
35dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
36dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
37dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
38dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
39dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
40dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
41dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
42emb|AL731583.2|OSJN00231 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
43gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 geno... 42 1.5
44gb|AC090714.9| Oryza sativa chromosome 3 BAC OSJNBb0031G04 genom... 42 1.5
45dbj|AP005534.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
46dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
47dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
48dbj|AP004180.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
49dbj|AP005745.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
50dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
51dbj|AP004123.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
52gb|AY828170.1| Oryza sativa (japonica cultivar-group) clone noaC... 42 1.5
53gb|AY828167.1| Oryza sativa (japonica cultivar-group) clone noaC... 42 1.5
54gb|AY828160.1| Oryza sativa (japonica cultivar-group) clone noaC... 42 1.5
55gb|AY828121.1| Oryza sativa (japonica cultivar-group) clone noaC... 42 1.5
56gb|AY828060.1| Oryza sativa (japonica cultivar-group) clone noaC... 42 1.5
57gb|AY827971.1| Oryza sativa (japonica cultivar-group) clone noaC... 42 1.5
58gb|AY827965.1| Oryza sativa (japonica cultivar-group) clone noaC... 42 1.5
59dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
60gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
61gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
62emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4,... 42 1.5
63emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, ... 42 1.5
64gb|AC110904.8| Mus musculus chromosome 7, clone RP24-174I24, com... 40 5.9
65ref|XM_450376.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
66gb|AC145810.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
67gb|AC125457.3| Mus musculus BAC clone RP24-195A4 from chromosome... 40 5.9
68emb|AL138814.13| Human DNA sequence from clone RP11-10M21 on chr... 40 5.9
69emb|AL049570.11|HSJ437I16 Human DNA sequence from clone RP3-437I... 40 5.9
70gb|AC069063.22| Homo sapiens 3 BAC RP11-58D2 (Roswell Park Cance... 40 5.9
71emb|CR378680.1| Photobacterium profundum SS9 chromosome 2; segme... 40 5.9
72emb|BX883047.1| Rattus norvegicus chromosome 20, major histocomp... 40 5.9
73emb|BX883046.1| Rattus norvegicus chromosome 20, major histocomp... 40 5.9
74gb|AY884588.1| Neogobius cephalarges haplotype A cytochrome b ge... 40 5.9
75emb|AJ605534.1| Pseudomonas sp. CFBP 11402 hrcR gene (partial), ... 40 5.9
76emb|BX571850.7| Zebrafish DNA sequence from clone DKEY-259L18 in... 40 5.9
77gb|AC006065.3| Homo sapiens 12q24.2 BAC RPCI11-407A16 (Roswell P... 40 5.9
78dbj|AP005829.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
79emb|BX546498.7| Mouse DNA sequence from clone RP23-217I22 on chr... 40 5.9
80dbj|AP005608.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
81dbj|AK070630.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
82gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 40 5.9 
>gb|BT018483.1| Zea mays clone EL01N0424D02.d mRNA sequence
          Length = 1744

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 47/48 (97%)
 Strand = Plus / Minus

                                                           
Query: 394 gggttgacacatgtactgatgcatgagttagtgaggaccctccgactc 441
           ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 875 gggttgacacatgtactgatgcatgagttagtggggaccctccgactc 828



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 125  tacaaaaataatcctgtgacaa 146
            ||||||||||||||||||||||
Sbjct: 1176 tacaaaaataatcctgtgacaa 1155
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 88/100 (88%), Gaps = 2/100 (2%)
 Strand = Plus / Minus

                                                                            
Query: 342      aagttagcaggtggccaacttaaccctcttttccgcagaagtgaaaaaggctgggttgac 401
                |||||||||||  |||||||||||||||| ||| |||||||||| || | | || | |||
Sbjct: 23440743 aagttagcaggcagccaacttaaccctctcttctgcagaagtgataaggacaggct-gac 23440685

                                                        
Query: 402      acatgtactgatgcatgagttagtgaggaccctccgactc 441
                ||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 23440684 acatgtattgatgcatgagttagtgagga-cctccgactc 23440646



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                            
Query: 200      gagtgaccatatgaccaaagttcgatgcatgcaatggatgcaaggtaaagcgagagcacc 259
                ||||||||||  |||||||||||||||||||||||| |||||| | ||| ||| ||||||
Sbjct: 23440911 gagtgaccatccgaccaaagttcgatgcatgcaatgaatgcaatggaaaacgatagcacc 23440852

                               
Query: 260      cagaccataagcatg 274
                |||||| || |||||
Sbjct: 23440851 cagaccctacgcatg 23440837



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 129      aaaataatcctgtgacaatgc 149
                |||||||||||||||||||||
Sbjct: 23440984 aaaataatcctgtgacaatgc 23440964
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>dbj|AK120538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129D16, full
            insert sequence
          Length = 3056

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 88/100 (88%), Gaps = 2/100 (2%)
 Strand = Plus / Minus

                                                                        
Query: 342  aagttagcaggtggccaacttaaccctcttttccgcagaagtgaaaaaggctgggttgac 401
            |||||||||||  |||||||||||||||| ||| |||||||||| || | | || | |||
Sbjct: 2321 aagttagcaggcagccaacttaaccctctcttctgcagaagtgataaggacaggct-gac 2263

                                                    
Query: 402  acatgtactgatgcatgagttagtgaggaccctccgactc 441
            ||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 2262 acatgtattgatgcatgagttagtgagga-cctccgactc 2224



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                        
Query: 200  gagtgaccatatgaccaaagttcgatgcatgcaatggatgcaaggtaaagcgagagcacc 259
            ||||||||||  |||||||||||||||||||||||| |||||| | ||| ||| ||||||
Sbjct: 2489 gagtgaccatccgaccaaagttcgatgcatgcaatgaatgcaatggaaaacgatagcacc 2430

                           
Query: 260  cagaccataagcatg 274
            |||||| || |||||
Sbjct: 2429 cagaccctacgcatg 2415



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 129  aaaataatcctgtgacaatgc 149
            |||||||||||||||||||||
Sbjct: 2562 aaaataatcctgtgacaatgc 2542
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>dbj|AK103854.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148M08, full
            insert sequence
          Length = 2341

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 88/100 (88%), Gaps = 2/100 (2%)
 Strand = Plus / Minus

                                                                        
Query: 342  aagttagcaggtggccaacttaaccctcttttccgcagaagtgaaaaaggctgggttgac 401
            |||||||||||  |||||||||||||||| ||| |||||||||| || | | || | |||
Sbjct: 1589 aagttagcaggcagccaacttaaccctctcttctgcagaagtgataaggacaggct-gac 1531

                                                    
Query: 402  acatgtactgatgcatgagttagtgaggaccctccgactc 441
            ||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 1530 acatgtattgatgcatgagttagtgagga-cctccgactc 1492



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                        
Query: 200  gagtgaccatatgaccaaagttcgatgcatgcaatggatgcaaggtaaagcgagagcacc 259
            ||||||||||  |||||||||||||||||||||||| |||||| | ||| ||| ||||||
Sbjct: 1757 gagtgaccatccgaccaaagttcgatgcatgcaatgaatgcaatggaaaacgatagcacc 1698

                           
Query: 260  cagaccataagcatg 274
            |||||| || |||||
Sbjct: 1697 cagaccctacgcatg 1683



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 129  aaaataatcctgtgacaatgc 149
            |||||||||||||||||||||
Sbjct: 1830 aaaataatcctgtgacaatgc 1810
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 88/100 (88%), Gaps = 2/100 (2%)
 Strand = Plus / Minus

                                                                            
Query: 342      aagttagcaggtggccaacttaaccctcttttccgcagaagtgaaaaaggctgggttgac 401
                |||||||||||  |||||||||||||||| ||| |||||||||| || | | || | |||
Sbjct: 23368934 aagttagcaggcagccaacttaaccctctcttctgcagaagtgataaggacaggct-gac 23368876

                                                        
Query: 402      acatgtactgatgcatgagttagtgaggaccctccgactc 441
                ||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 23368875 acatgtattgatgcatgagttagtgagga-cctccgactc 23368837



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                            
Query: 200      gagtgaccatatgaccaaagttcgatgcatgcaatggatgcaaggtaaagcgagagcacc 259
                ||||||||||  |||||||||||||||||||||||| |||||| | ||| ||| ||||||
Sbjct: 23369102 gagtgaccatccgaccaaagttcgatgcatgcaatgaatgcaatggaaaacgatagcacc 23369043

                               
Query: 260      cagaccataagcatg 274
                |||||| || |||||
Sbjct: 23369042 cagaccctacgcatg 23369028



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 129      aaaataatcctgtgacaatgc 149
                |||||||||||||||||||||
Sbjct: 23369175 aaaataatcctgtgacaatgc 23369155
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>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 162261

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 88/100 (88%), Gaps = 2/100 (2%)
 Strand = Plus / Plus

                                                                         
Query: 342   aagttagcaggtggccaacttaaccctcttttccgcagaagtgaaaaaggctgggttgac 401
             |||||||||||  |||||||||||||||| ||| |||||||||| || | | || | |||
Sbjct: 61416 aagttagcaggcagccaacttaaccctctcttctgcagaagtgataaggacaggct-gac 61474

                                                     
Query: 402   acatgtactgatgcatgagttagtgaggaccctccgactc 441
             ||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 61475 acatgtattgatgcatgagttagtgagga-cctccgactc 61513



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                         
Query: 200   gagtgaccatatgaccaaagttcgatgcatgcaatggatgcaaggtaaagcgagagcacc 259
             ||||||||||  |||||||||||||||||||||||| |||||| | ||| ||| ||||||
Sbjct: 61248 gagtgaccatccgaccaaagttcgatgcatgcaatgaatgcaatggaaaacgatagcacc 61307

                            
Query: 260   cagaccataagcatg 274
             |||||| || |||||
Sbjct: 61308 cagaccctacgcatg 61322



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   aaaataatcctgtgacaatgc 149
             |||||||||||||||||||||
Sbjct: 61175 aaaataatcctgtgacaatgc 61195
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>dbj|AB011271.1| Oryza sativa (japonica cultivar-group) mRNA for importin-beta2,
            partial cds
          Length = 3676

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 88/100 (88%), Gaps = 2/100 (2%)
 Strand = Plus / Minus

                                                                        
Query: 342  aagttagcaggtggccaacttaaccctcttttccgcagaagtgaaaaaggctgggttgac 401
            |||||||||||  |||||||||||||||| ||| |||||||||| || | | || | |||
Sbjct: 2923 aagttagcaggcagccaacttaaccctctcttctgcagaagtgataaggacaggct-gac 2865

                                                    
Query: 402  acatgtactgatgcatgagttagtgaggaccctccgactc 441
            ||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 2864 acatgtattgatgcatgagttagtgagga-cctccgactc 2826



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                        
Query: 200  gagtgaccatatgaccaaagttcgatgcatgcaatggatgcaaggtaaagcgagagcacc 259
            ||||||||||  |||||||||||||||||||||||| |||||| | ||| ||| ||||||
Sbjct: 3091 gagtgaccatccgaccaaagttcgatgcatgcaatgaatgcaatggaaaacgatagcacc 3032

                           
Query: 260  cagaccataagcatg 274
            |||||| || |||||
Sbjct: 3031 cagaccctacgcatg 3017



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 129  aaaataatcctgtgacaatgc 149
            |||||||||||||||||||||
Sbjct: 3164 aaaataatcctgtgacaatgc 3144
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>gb|AY106264.1| Zea mays PCO124599 mRNA sequence
          Length = 1372

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 90/102 (88%), Gaps = 3/102 (2%)
 Strand = Plus / Minus

                                                                       
Query: 342 aagttagcaggtggccaactt-aaccctcttttc-cgcagaagtgaaaaaggctgggttg 399
           ||||||||||  ||||| ||| |||||||||||| ||||||||  | || ||| ||||||
Sbjct: 690 aagttagcagacggccagcttgaaccctcttttctcgcagaagcaagaagggc-gggttg 632

                                                     
Query: 400 acacatgtactgatgcatgagttagtgaggaccctccgactc 441
           ||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 631 acacatgtagtgatgcatgagttagtgaggaccctcagactc 590



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 125 tacaaaaataatcctgtgacaatgc 149
           |||||||||||||||||||||||||
Sbjct: 939 tacaaaaataatcctgtgacaatgc 915
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>ref|NM_194535.1| Oryza sativa (japonica cultivar-group) putative retroelement
           (OSJNBa0015O22.1), mRNA
          Length = 2967

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 28  tgggatgaatgcaaaacaatg 48
           |||||||||||||||||||||
Sbjct: 313 tgggatgaatgcaaaacaatg 333
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>ref|NM_183723.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1413

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 28  tgggatgaatgcaaaacaatg 48
           |||||||||||||||||||||
Sbjct: 313 tgggatgaatgcaaaacaatg 333
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>ref|XM_469298.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1128

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 28  tgggatgaatgcaaaacaatg 48
           |||||||||||||||||||||
Sbjct: 772 tgggatgaatgcaaaacaatg 792
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>ref|XM_471521.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1872

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 28  tgggatgaatgcaaaacaatg 48
           |||||||||||||||||||||
Sbjct: 127 tgggatgaatgcaaaacaatg 147
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>gb|AC148393.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0044A08 map near S6115, complete sequence
          Length = 158583

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 26703 tgggatgaatgcaaaacaatg 26683
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>gb|AC146938.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062O09
              map near S6115, complete sequence
          Length = 148654

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 120406 tgggatgaatgcaaaacaatg 120386
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>gb|AC147802.2| Oryza sativa chromosome 3 BAC OSJNBb0013C14 genomic sequence, complete
             sequence
          Length = 132981

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 58268 tgggatgaatgcaaaacaatg 58288
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>gb|AC037197.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0065H03,
              complete sequence
          Length = 141017

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 141005 tgggatgaatgcaaaacaatg 140985
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>gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBa0094J09,
              complete sequence
          Length = 168192

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 112411 tgggatgaatgcaaaacaatg 112391
to top
>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNAa0068G15, complete sequence
          Length = 130161

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 87951 tgggatgaatgcaaaacaatg 87971
to top
>gb|AC133335.4| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genomic sequence, complete
             sequence
          Length = 55268

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 28862 tgggatgaatgcaaaacaatg 28842
to top
>gb|AC114896.5| Oryza sativa chromosome 3 BAC OSJNBa0091B22 genomic sequence, complete
              sequence
          Length = 115815

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 107708 tgggatgaatgcaaaacaatg 107688
to top
>gb|AC119292.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0088F07, complete sequence
          Length = 139180

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 73885 tgggatgaatgcaaaacaatg 73905
to top
>gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0022L07, complete sequence
          Length = 142134

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 98623 tgggatgaatgcaaaacaatg 98603
to top
>gb|AC144736.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
            OSJNBa0008E07, complete sequence
          Length = 146679

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 28   tgggatgaatgcaaaacaatg 48
            |||||||||||||||||||||
Sbjct: 2628 tgggatgaatgcaaaacaatg 2608
to top
>gb|AC144452.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0025G07, complete sequence
          Length = 167136

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 112262 tgggatgaatgcaaaacaatg 112242
to top
>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06,
             complete sequence
          Length = 185449

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 17790 tgggatgaatgcaaaacaatg 17810
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 26609144 tgggatgaatgcaaaacaatg 26609124



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 19851872 tgggatgaatgcaaaacaatg 19851852



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 18153663 tgggatgaatgcaaaacaatg 18153683



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 17784407 tgggatgaatgcaaaacaatg 17784427
to top
>gb|AC133337.5| Oryza sativa chromosome 3 BAC OSJNBa0023A13 genomic sequence, complete
             sequence
          Length = 72745

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 44871 tgggatgaatgcaaaacaatg 44851
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 536831 tgggatgaatgcaaaacaatg 536811
to top
>emb|AL731604.3|OSJN00247 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042D13,
              complete sequence
          Length = 163429

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 138758 tgggatgaatgcaaaacaatg 138778
to top
>gb|AC119149.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0079E01, complete sequence
          Length = 132870

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 93160 tgggatgaatgcaaaacaatg 93140
to top
>gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar
            Nipponbare Clone OSJNBa0015O22 From Chromosome 10,
            complete sequence
          Length = 189349

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 28   tgggatgaatgcaaaacaatg 48
            |||||||||||||||||||||
Sbjct: 4439 tgggatgaatgcaaaacaatg 4419
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 11610207 tgggatgaatgcaaaacaatg 11610187



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 10639421 tgggatgaatgcaaaacaatg 10639441
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 12519429 tgggatgaatgcaaaacaatg 12519449



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 28      tgggatgaatgcaaaacaatg 48
               |||||||||||||||||||||
Sbjct: 1946235 tgggatgaatgcaaaacaatg 1946255



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 215     caaagttcgatgcatgcaat 234
               ||||||||||||||||||||
Sbjct: 8767649 caaagttcgatgcatgcaat 8767668
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 12313255 tgggatgaatgcaaaacaatg 12313235



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 28      tgggatgaatgcaaaacaatg 48
               |||||||||||||||||||||
Sbjct: 7999543 tgggatgaatgcaaaacaatg 7999563



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 536831 tgggatgaatgcaaaacaatg 536811
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 28      tgggatgaatgcaaaacaatg 48
               |||||||||||||||||||||
Sbjct: 2934130 tgggatgaatgcaaaacaatg 2934110



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     gttcgatgcatgcaatggat 238
               ||||||||||||||||||||
Sbjct: 5036389 gttcgatgcatgcaatggat 5036408
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 16253714 tgggatgaatgcaaaacaatg 16253694
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 13522375 tgggatgaatgcaaaacaatg 13522395
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 21193102 tgggatgaatgcaaaacaatg 21193122



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 14239290 tgggatgaatgcaaaacaatg 14239270



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 12235150 tgggatgaatgcaaaacaatg 12235130
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 26700467 tgggatgaatgcaaaacaatg 26700447



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 19844899 tgggatgaatgcaaaacaatg 19844879



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 18147204 tgggatgaatgcaaaacaatg 18147224



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 17777948 tgggatgaatgcaaaacaatg 17777968
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 14011443 tgggatgaatgcaaaacaatg 14011423



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 11450183 tgggatgaatgcaaaacaatg 11450203



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 29       gggatgaatgcaaaacaatg 48
                ||||||||||||||||||||
Sbjct: 15188870 gggatgaatgcaaaacaatg 15188851
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 16510309 tgggatgaatgcaaaacaatg 16510329



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 11825801 tgggatgaatgcaaaacaatg 11825781
to top
>emb|AL731583.2|OSJN00231 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013A04,
             complete sequence
          Length = 188209

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 38648 tgggatgaatgcaaaacaatg 38668
to top
>gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 genomic sequence, complete
              sequence
          Length = 136712

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 131958 tgggatgaatgcaaaacaatg 131938
to top
>gb|AC090714.9| Oryza sativa chromosome 3 BAC OSJNBb0031G04 genomic sequence,
            complete sequence
          Length = 137297

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 28   tgggatgaatgcaaaacaatg 48
            |||||||||||||||||||||
Sbjct: 4161 tgggatgaatgcaaaacaatg 4141
to top
>dbj|AP005534.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0030M21
          Length = 155970

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 32675 tgggatgaatgcaaaacaatg 32695
to top
>dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1460_H08
          Length = 113514

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 30979 tgggatgaatgcaaaacaatg 30999
to top
>dbj|AP003535.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1012D10
          Length = 168267

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 38086 tgggatgaatgcaaaacaatg 38066
to top
>dbj|AP004180.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_B05
          Length = 117057

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 81081 tgggatgaatgcaaaacaatg 81061
to top
>dbj|AP005745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0017O03
          Length = 180651

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 125122 tgggatgaatgcaaaacaatg 125102
to top
>dbj|AP005831.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1123E10
          Length = 134641

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 102058 tgggatgaatgcaaaacaatg 102078
to top
>dbj|AP004123.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1654_A02
          Length = 128520

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 119655 tgggatgaatgcaaaacaatg 119675
to top
>gb|AY828170.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH10-12 noaCRR1
            retrotransposon, partial sequence
          Length = 4424

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 28   tgggatgaatgcaaaacaatg 48
            |||||||||||||||||||||
Sbjct: 2518 tgggatgaatgcaaaacaatg 2538
to top
>gb|AY828167.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH10-9 noaCRR1
            retrotransposon, partial sequence
          Length = 5134

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 28   tgggatgaatgcaaaacaatg 48
            |||||||||||||||||||||
Sbjct: 3192 tgggatgaatgcaaaacaatg 3212
to top
>gb|AY828160.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH10-2 noaCRR1
            retrotransposon, partial sequence
          Length = 4436

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 28   tgggatgaatgcaaaacaatg 48
            |||||||||||||||||||||
Sbjct: 2531 tgggatgaatgcaaaacaatg 2551
to top
>gb|AY828121.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH8-13 noaCRR1
            retrotransposon, partial sequence
          Length = 4834

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 28   tgggatgaatgcaaaacaatg 48
            |||||||||||||||||||||
Sbjct: 2681 tgggatgaatgcaaaacaatg 2701
to top
>gb|AY828060.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH4-26 noaCRR1
            retrotransposon, partial sequence
          Length = 3827

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 28   tgggatgaatgcaaaacaatg 48
            |||||||||||||||||||||
Sbjct: 1953 tgggatgaatgcaaaacaatg 1973
to top
>gb|AY827971.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH1-10 noaCRR1
            retrotransposon, partial sequence
          Length = 4140

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 28   tgggatgaatgcaaaacaatg 48
            |||||||||||||||||||||
Sbjct: 2499 tgggatgaatgcaaaacaatg 2519
to top
>gb|AY827965.1| Oryza sativa (japonica cultivar-group) clone noaCRR1_CH1-4 noaCRR1
            retrotransposon, partial sequence
          Length = 4258

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 28   tgggatgaatgcaaaacaatg 48
            |||||||||||||||||||||
Sbjct: 2351 tgggatgaatgcaaaacaatg 2371
to top
>dbj|AP005096.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1104G07
          Length = 119643

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 43892 tgggatgaatgcaaaacaatg 43872
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 12320595 tgggatgaatgcaaaacaatg 12320575



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 28      tgggatgaatgcaaaacaatg 48
               |||||||||||||||||||||
Sbjct: 8004642 tgggatgaatgcaaaacaatg 8004662



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     tgggatgaatgcaaaacaatg 48
              |||||||||||||||||||||
Sbjct: 536828 tgggatgaatgcaaaacaatg 536808
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 28       tgggatgaatgcaaaacaatg 48
                |||||||||||||||||||||
Sbjct: 12598736 tgggatgaatgcaaaacaatg 12598756



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 28      tgggatgaatgcaaaacaatg 48
               |||||||||||||||||||||
Sbjct: 1954016 tgggatgaatgcaaaacaatg 1954036



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 215     caaagttcgatgcatgcaat 234
               ||||||||||||||||||||
Sbjct: 8838412 caaagttcgatgcatgcaat 8838431
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>emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09,
             complete sequence
          Length = 164911

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    tgggatgaatgcaaaacaatg 48
             |||||||||||||||||||||
Sbjct: 93217 tgggatgaatgcaaaacaatg 93197
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>emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, complete sequence
          Length = 192649

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 198   atgagtgaccatatgaccaaa 218
             |||||||||||||||||||||
Sbjct: 35696 atgagtgaccatatgaccaaa 35716
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>gb|AC110904.8| Mus musculus chromosome 7, clone RP24-174I24, complete sequence
          Length = 150036

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   gaagtgaaaaaggctgggtt 398
             ||||||||||||||||||||
Sbjct: 66763 gaagtgaaaaaggctgggtt 66782
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>ref|XM_450376.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1022

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gttcgatgcatgcaatggat 238
           ||||||||||||||||||||
Sbjct: 846 gttcgatgcatgcaatggat 827
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>gb|AC145810.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0059C14, complete sequence
          Length = 142138

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   caaagttcgatgcatgcaat 234
             ||||||||||||||||||||
Sbjct: 66420 caaagttcgatgcatgcaat 66439
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>gb|AC125457.3| Mus musculus BAC clone RP24-195A4 from chromosome X, complete sequence
          Length = 127812

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   ggccaacttaaccctctttt 373
             ||||||||||||||||||||
Sbjct: 78565 ggccaacttaaccctctttt 78584
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>emb|AL138814.13| Human DNA sequence from clone RP11-10M21 on chromosome 13 Contains the
             5' end of a novel gene, complete sequence
          Length = 114290

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aaaagaacccttacaaaaca 24
             ||||||||||||||||||||
Sbjct: 86796 aaaagaacccttacaaaaca 86777
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>emb|AL049570.11|HSJ437I16 Human DNA sequence from clone RP3-437I16 on chromosome 1p35.1-35.3
             Contains the 3' end of the gene PTPRU for protein tyrosine
             phosphatase receptor type U and a novel gene, complete
             sequence
          Length = 120385

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   gcagaagtgaaaaaggctgg 395
             ||||||||||||||||||||
Sbjct: 12237 gcagaagtgaaaaaggctgg 12218
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>gb|AC069063.22| Homo sapiens 3 BAC RP11-58D2 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 112126

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 408  actgatgcatgagttagtga 427
            ||||||||||||||||||||
Sbjct: 5068 actgatgcatgagttagtga 5049
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>emb|CR378680.1| Photobacterium profundum SS9 chromosome 2; segment 6/7
          Length = 349751

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    tgcataatggatgaataagc 183
              ||||||||||||||||||||
Sbjct: 193722 tgcataatggatgaataagc 193741
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>emb|BX883047.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
             assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
             RT1n haplotype; segment 6/11
          Length = 349571

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   gaagctcctggattcccttt 335
             ||||||||||||||||||||
Sbjct: 30235 gaagctcctggattcccttt 30216
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>emb|BX883046.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 5/11
          Length = 349047

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 316    gaagctcctggattcccttt 335
              ||||||||||||||||||||
Sbjct: 299866 gaagctcctggattcccttt 299847
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>gb|AY884588.1| Neogobius cephalarges haplotype A cytochrome b gene, partial cds;
           mitochondrial
          Length = 451

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 aaaaataatcctgtgacaat 147
           ||||||||||||||||||||
Sbjct: 143 aaaaataatcctgtgacaat 124
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>emb|AJ605534.1| Pseudomonas sp. CFBP 11402 hrcR gene (partial), hrcS gene and hrcT
           gene (partial), strain CFBP 11402
          Length = 892

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 348 gcaggtggccaacttaaccc 367
           ||||||||||||||||||||
Sbjct: 762 gcaggtggccaacttaaccc 781
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>emb|BX571850.7| Zebrafish DNA sequence from clone DKEY-259L18 in linkage group 23,
              complete sequence
          Length = 236136

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     aatgcaaaacaatgcaaatg 54
              ||||||||||||||||||||
Sbjct: 109779 aatgcaaaacaatgcaaatg 109798
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>gb|AC006065.3| Homo sapiens 12q24.2 BAC RPCI11-407A16 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 191134

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     atgtcccacatggtgaagtt 109
              ||||||||||||||||||||
Sbjct: 99991  atgtcccacatggtgaagtt 100010
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>dbj|AP005829.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1008E06
          Length = 170228

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   gttcgatgcatgcaatggat 238
             ||||||||||||||||||||
Sbjct: 38506 gttcgatgcatgcaatggat 38525
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>emb|BX546498.7| Mouse DNA sequence from clone RP23-217I22 on chromosome X, complete
              sequence
          Length = 142658

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 354    ggccaacttaaccctctttt 373
              ||||||||||||||||||||
Sbjct: 133376 ggccaacttaaccctctttt 133395
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>dbj|AP005608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0008C07
          Length = 146008

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    gggatgaatgcaaaacaatg 48
             ||||||||||||||||||||
Sbjct: 72645 gggatgaatgcaaaacaatg 72626
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>dbj|AK070630.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058P10, full
           insert sequence
          Length = 1022

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gttcgatgcatgcaatggat 238
           ||||||||||||||||||||
Sbjct: 846 gttcgatgcatgcaatggat 827
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>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    catgcaatggatgcaaggta 246
              ||||||||||||||||||||
Sbjct: 911769 catgcaatggatgcaaggta 911788


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,563,461
Number of Sequences: 3902068
Number of extensions: 3563461
Number of successful extensions: 66176
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65455
Number of HSP's gapped (non-prelim): 715
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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