>PDCD1_HUMAN (Q15116) Programmed cell death protein 1 precursor (Protein PD-1)|
           (hPD-1) (CD279 antigen)
          Length = 288

 Score = 32.0 bits (71), Expect = 0.61
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 34  WIPEIKRQALKIIVQYSHHT-TCSMNNATK-FVLNWYKILVNNGT 162
           W P     AL ++ +  + T TCS +N ++ FVLNWY++  +N T
Sbjct: 32  WNPPTFFPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQT 76

>PYRB_BACTN (Q8A9S3) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate|
           transcarbamylase) (ATCase)
          Length = 313

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = -1

Query: 364 CRNDFPKFRKHTEQKGTTEDNIEKESLKHMILIRRGKLNLQVEYVSIRK*LLLPNVILQM 185
           C+    K+ +HTE    TE+ I    + +M  ++R +    +EY  ++   +L N +L+ 
Sbjct: 196 CKEHQIKYIEHTE---FTEEIIADADILYMTRVQRERFTDLMEYERVKNVYILRNKMLEN 252

Query: 184 TKLTVNILY 158
           T+  + IL+
Sbjct: 253 TRPNLRILH 261

>YCF2_MARPO (P09975) Protein ycf2|
          Length = 2136

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 228  LTYSTCKFNFPRLIRIICFRLSFSILSSV-VPFCSVCFLNLG 350
            LTY+  K NF R+ +I+ +++  +I+ ++ +   S+  LN+G
Sbjct: 1623 LTYTNNKLNFDRIFKIVIYKVGKTIIQNILIKSSSMNLLNIG 1664

>PUB2_SCHPO (Q9UTG2) E3 ubiquitin--protein ligase pub2 (EC 6.3.2.-)|
          Length = 671

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -1

Query: 397 YAKVEGLVPERCRNDFPKFRKHTEQKGTTEDNIEKESLKHMI 272
           + K+E L P++ +  F +F  + + K + + N+E + +KH++
Sbjct: 183 HEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYKVIKHLL 224

>ULA1_SCHPO (Q9UT93) NEDD8-activating enzyme E1 regulatory subunit|
           (Ubiquitin-like activation protein 1)
           (Ubiquitin-activating enzyme E1-like 1)
          Length = 500

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -1

Query: 409 SRDQYAKVEGLVPERCRNDFPKFRKHTEQK----GTTEDNIEKESLKHMILIRRGKLNLQ 242
           S  QY K++ +  E+  ND  KF+K+ +Q       + + I    +KH     R  LN++
Sbjct: 322 STQQYVKLQVIYKEKSENDILKFKKYVQQTLKRLNRSVEEITDLEIKH---FSRNCLNIK 378

Query: 241 V 239
           V
Sbjct: 379 V 379

>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (hN2) [Contains: Notch 2 extracellular truncation; Notch
            2 intracellular domain]
          Length = 2471

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 66   NYSTILPSYDMLNEQCDQIC 125
            N S+ LP +D +N QCD++C
Sbjct: 1465 NCSSPLPCWDYINNQCDELC 1484

>ATM_ARATH (Q9M3G7) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia|
            telangiectasia mutated homolog) (AtATM)
          Length = 3856

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +3

Query: 60   SQNYSTIL-----PSYDMLNEQCDQICTQLVQNISQQWYKI 167
            S N  TIL     P+  +  EQ  +IC +LV   SQ W+ +
Sbjct: 3166 SSNSRTILEKYLRPAVSLAEEQSSKICKRLVDRQSQTWFHL 3206

>YIF1A_BRARE (Q6PC24) Protein YIF1A (YIP1-interacting factor homolog A)|
          Length = 307

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 183 VICKITLGSNSYFLILTYSTCKFNFPRLIRIICFRLSFSILSSV 314
           V C +  GS+ Y++ L +S+C   F      I   L   ILSS+
Sbjct: 229 VFCGLLFGSDGYYVALAWSSCALMF-----FIVRSLKMKILSSI 267

>PDE1_YEAST (P22434) 3',5'-cyclic-nucleotide phosphodiesterase 1 (EC 3.1.4.17)|
           (PDEase 1) (Low-affinity cAMP phosphodiesterase)
           (3':5'-CNP)
          Length = 369

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = -2

Query: 423 VSVVTVVISMPRLKDLYQSAVGMTSLSS-----GNTPSRKEPRKTILRK 292
           +S + ++  +  L  LY S+ G++ L+       +TP++++PR TIL +
Sbjct: 295 LSPIYLINELSNLNTLYNSSKGLSGLNVIVTHVKSTPAKRDPRLTILEE 343

>CYAA_SACKL (P23466) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 1839

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 406 RDQYAKVEGLVPERCRNDFPKFRKHTEQKGTTEDNIEKE 290
           R+++ ++E    E   N  PKF+KH     TT  N E +
Sbjct: 14  REKHPQIEETFEEHVHNAMPKFKKHYALGITTHTNDEDD 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,769,050
Number of Sequences: 219361
Number of extensions: 1147828
Number of successful extensions: 2867
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2867
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)