ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02g10 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)| (Beta-COP) (Fragment) Length = 400 Score = 55.1 bits (131), Expect = 4e-08 Identities = 25/36 (69%), Positives = 31/36 (86%) Frame = -1 Query: 374 ALVNVSIEKQVDGKLSGYIRIRSKTQGIALSLGDKI 267 AL N+ IEKQ DGK+SGYIRIR+K Q IA++LG+KI Sbjct: 358 ALANICIEKQADGKISGYIRIRAKVQSIAVTLGEKI 393
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 53.5 bits (127), Expect = 1e-07 Identities = 29/45 (64%), Positives = 35/45 (77%), Gaps = 4/45 (8%) Frame = -1 Query: 374 ALVNVSIEKQV----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 252 AL NVSIEK V D ++G+IRIR+K+QG+ALSLGDKI L QK Sbjct: 905 ALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 53.5 bits (127), Expect = 1e-07 Identities = 29/45 (64%), Positives = 35/45 (77%), Gaps = 4/45 (8%) Frame = -1 Query: 374 ALVNVSIEKQV----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 252 AL NVSIEK V D ++G+IRIR+K+QG+ALSLGDKI L QK Sbjct: 905 ALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 53.1 bits (126), Expect = 2e-07 Identities = 28/44 (63%), Positives = 36/44 (81%), Gaps = 3/44 (6%) Frame = -1 Query: 374 ALVNVSIEKQVD---GKLSGYIRIRSKTQGIALSLGDKITLKQK 252 AL N+SIEK VD K++G+IRIR+K+QG+ALSLGDKI+ QK Sbjct: 915 ALANLSIEKPVDDPDSKVTGHIRIRAKSQGMALSLGDKISSSQK 958
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 50.4 bits (119), Expect = 1e-06 Identities = 23/33 (69%), Positives = 30/33 (90%) Frame = -1 Query: 374 ALVNVSIEKQVDGKLSGYIRIRSKTQGIALSLG 276 AL+++S+EK V G +SG++RIRSKTQGIALSLG Sbjct: 905 ALMSLSVEKSVSGPISGHVRIRSKTQGIALSLG 937
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 46.6 bits (109), Expect = 1e-05 Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 4/45 (8%) Frame = -1 Query: 374 ALVNVSIEKQV----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 252 AL NVS EK + D ++ +IRIR+K+QG+ALSLGDKI L QK Sbjct: 905 ALANVSSEKPLHQGPDAAVTVHIRIRAKSQGMALSLGDKINLSQK 949
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 43.1 bits (100), Expect = 2e-04 Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 3/44 (6%) Frame = -1 Query: 374 ALVNVSIEKQVDGKLS---GYIRIRSKTQGIALSLGDKITLKQK 252 AL N+ IEK D K + GY+RIRSK QG+ALSLGD++ L K Sbjct: 922 ALANLCIEK--DSKTNDVIGYVRIRSKGQGLALSLGDRVALIAK 963
>INP4A_RAT (Q62784) Type I inositol-3,4-bisphosphate 4-phosphatase (EC| 3.1.3.66) (Inositol polyphosphate 4-phosphatase type I) Length = 939 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +2 Query: 188 LAKWTSYMTQLQQIASQLNCLPSA*G*SCLPS*VQFLG 301 L + SY Q +++ + +CLP + +CLP ++FLG Sbjct: 789 LVRLNSYFEQFKEVLPE-DCLPRSRSQTCLPELLRFLG 825
>INP4A_MOUSE (Q9EPW0) Type I inositol-3,4-bisphosphate 4-phosphatase (EC| 3.1.3.66) (Inositol polyphosphate 4-phosphatase type I) Length = 939 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = +2 Query: 152 TSLLAHCTGSMKLAKWTSYMTQLQQIASQLNCLPSA*G*SCLPS*VQFLG 301 TSL G L + SY Q +++ + +CLP + +CLP ++FLG Sbjct: 778 TSLQEGINGE-SLVRVNSYFEQFKEVLPE-DCLPRSRSQTCLPELLRFLG 825
>INP4A_HUMAN (Q96PE3) Type I inositol-3,4-bisphosphate 4-phosphatase (EC| 3.1.3.66) (Inositol polyphosphate 4-phosphatase type I) Length = 977 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +2 Query: 188 LAKWTSYMTQLQQIASQLNCLPSA*G*SCLPS*VQFLG 301 L + SY Q +++ + +CLP + +CLP ++FLG Sbjct: 827 LVRLNSYFEQFKEVLPE-DCLPRSRSQTCLPELLRFLG 863
>GTF2_STRDO (P27470) Glucosyltransferase-I precursor (EC 2.4.1.5) (GTF-I)| (Dextransucrase) (Sucrose 6-glucosyltransferase) Length = 1592 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = -1 Query: 371 LVNVSIEKQVDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS*AVTQSV 222 L +S KQVDGK Y + + + A+S+GDKI + G+ T V Sbjct: 148 LAKMSNVKQVDGKYYYYDQDGNVKKNFAVSVGDKIYYFDETGAYKDTSKV 197
>RL1D1_PONPY (Q5RCE6) Ribosomal L1 domain-containing protein 1| Length = 490 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -2 Query: 145 NVQKIKERDEKRKIARKSVLRLKMDLQLVSSGDAMI 38 N +K KER +KR+ ARK+ L D SGD + Sbjct: 295 NFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTV 330
>RL1D1_HUMAN (O76021) Ribosomal L1 domain-containing protein 1 (Cellular| senescence-inhibited gene protein) (PBK1 protein) (CATX-11) Length = 490 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -2 Query: 145 NVQKIKERDEKRKIARKSVLRLKMDLQLVSSGDAMI 38 N +K KER +KR+ ARK+ L D SGD + Sbjct: 295 NFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTV 330
>CHMU_ARATH (P42738) Chorismate mutase, chloroplast precursor (EC 5.4.99.5)| (CM-1) Length = 334 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = -3 Query: 252 GRQLSCDAICCNCVM*EVHFASFI 181 G CDAIC C+ +H+ F+ Sbjct: 207 GSTAVCDAICLQCLSKRIHYGKFV 230
>ERG6_PNECA (Q96WX4) Sterol 24-C-methyltransferase (EC 2.1.1.41)| (Delta(24)-sterol C-methyltransferase) Length = 377 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = -2 Query: 214 CHVGGPLCQ---FHTTGTVG**RCFYNVQKIKERDEKRKIARK 95 C VGGP CQ F VG Y +Q+ K EK+ ++ K Sbjct: 135 CGVGGPACQISVFTGANIVGLNNNDYQIQRAKYYSEKKGLSDK 177 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,302,227 Number of Sequences: 219361 Number of extensions: 719854 Number of successful extensions: 1635 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1614 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1635 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
