ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ201158.1| Hordeum vulgare subsp. vulgare cultivar Morex phy... 761 0.0
2gb|DQ201141.1| Hordeum vulgare subsp. vulgare cultivar Kompolti ... 593 e-166
3gb|DQ201140.1| Hordeum vulgare subsp. vulgare cultivar Morex phy... 509 e-141
4gb|DQ201139.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo p... 509 e-141
5emb|AJ313099.1|TAE313099 Triticum aestivum phya1 gene for phytoc... 117 3e-23
6emb|X03243.1|ASAP4R Avena sativa mRNA for phytochrome (AP4) 66 1e-07
7gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
8gb|AC147426.2| Oryza sativa chromosome 3 B1377B10 genomic seque... 56 1e-04
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 56 1e-04
10dbj|AB109891.1| Oryza sativa (japonica cultivar-group) PHYA mRNA... 56 1e-04
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
12emb|X14172.1|OSPHY18 Rice phy 18 gene for phytochrome 56 1e-04
13dbj|AK072482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
14gb|AY466083.1| Sorghum propinquum phytochrome A (PHYA) gene, com... 46 0.093
15gb|AY466082.1| Sorghum x drummondii voucher PI302233 phytochrome... 46 0.093
16gb|AY466081.1| Sorghum arundinaceum voucher PI302233 phytochrome... 46 0.093
17gb|AY466080.1| Sorghum arundinaceum voucher PI225905 phytochrome... 46 0.093
18gb|AY466079.1| Sorghum arundinaceum voucher IS14485 phytochrome ... 46 0.093
19gb|AY466078.1| Sorghum arundinaceum voucher PI302105 phytochrome... 46 0.093
20gb|AY466077.1| Sorghum arundinaceum voucher IS14567 phytochrome ... 46 0.093
21gb|AY466076.1| Sorghum arundinaceum voucher IS14503 phytochrome ... 46 0.093
22gb|AY466075.1| Sorghum arundinaceum voucher PI213900 phytochrome... 46 0.093
23gb|AY466074.1| Sorghum arundinaceum voucher IS14569 phytochrome ... 46 0.093
24gb|AY466073.1| Sorghum bicolor phytochrome A (PHYA) gene, comple... 46 0.093
25gb|AY466072.1| Sorghum bicolor isolate PHYA-RTx430 phytochrome A... 46 0.093
26gb|AY466071.1| Sorghum bicolor voucher NSL83707 phytochrome A (P... 46 0.093
27gb|AY466070.1| Sorghum bicolor voucher PI152593 phytochrome A (P... 46 0.093
28gb|AY466069.1| Sorghum bicolor voucher PI229835 phytochrome A (P... 46 0.093
29gb|AY466068.1| Sorghum bicolor voucher PI153800 phytochrome A (P... 46 0.093
30gb|AY466067.1| Sorghum bicolor voucher PI267380 phytochrome A (P... 46 0.093
31gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence 46 0.093
32gb|U56729.1|SBU56729 Sorghum bicolor phytochrome A (PHYA) mRNA, ... 46 0.093
33ref|XM_592363.2| PREDICTED: Bos taurus similar to epidermal grow... 44 0.37
34gb|AC069133.6| Homo sapiens BAC clone RP11-579E24 from 8, comple... 44 0.37
35gb|AC068863.6| Homo sapiens chromosome 2, clone CTD-2170C4, comp... 44 0.37
36gb|AC132597.3| Mus musculus BAC clone RP24-180D17 from chromosom... 42 1.4
37gb|AY803752.1| Tilletiaria anomala isolate AFTOL-ID 865 18S ribo... 40 5.7
38gb|AC147708.7| Canis Familiaris, clone XX-25G10, complete sequence 40 5.7
39gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome 40 5.7
40gb|AC102358.5| Mus musculus chromosome 8, clone RP23-451H9, comp... 40 5.7
41gb|AC140055.4| Mus musculus BAC clone RP23-52F4 from chromosome ... 40 5.7
42gb|AC124731.5| Mus musculus BAC clone RP23-287B7 from 3, complet... 40 5.7
43gb|AC121866.2| Mus musculus BAC clone RP24-114G1 from 8, complet... 40 5.7
44gb|AC122730.27| Medicago truncatula clone mth2-36p5, complete se... 40 5.7
45gb|AY267353.1| Chara vulgaris mitochondrion, complete genome 40 5.7
46emb|AL135786.17| Human DNA sequence from clone RP11-12D24 on chr... 40 5.7
47emb|AL132776.11|HSJ393D12 Human DNA sequence from clone RP3-393D... 40 5.7
48emb|Z47978.1|BSL22RPRT B.subtilis gene for ribosomal protein L22 40 5.7
49gb|AY741382.1| Wallemia ichthyophaga strain CBS 113033 18S small... 40 5.7
50emb|BX323843.9| Zebrafish DNA sequence from clone CH211-10A23 in... 40 5.7
51gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, co... 40 5.7
52dbj|AB045706.1| Tilletiopsis penniseti gene for 18S rRNA, partia... 40 5.7
53dbj|AB045705.1| Tilletiopsis oryzicola gene for 18S rRNA, partia... 40 5.7
54dbj|AB045704.1| Tilletiopsis derxii gene for 18S rRNA, partial s... 40 5.7
55dbj|AB045703.1| Tilletiopsis flava gene for 18S rRNA, partial se... 40 5.7
56dbj|D83193.1| Tilletiaria anomala 18S rRNA gene, partial sequence 40 5.7
57dbj|D83190.1| Tilletiopsis minor 18S rRNA gene, partial sequence 40 5.7
58dbj|D83189.1| Tilletiopsis fulvescens 18S rRNA gene, partial seq... 40 5.7
59dbj|D83188.1| Tilletiopsis albescens 18S rRNA gene, partial sequ... 40 5.7
60dbj|D82819.1| Tilletiopsis flava 18S rRNA gene, partial sequence 40 5.7
61emb|X03242.1|ASAP3R Avena sativa mRNA for phytochrome (AP3) 40 5.7
62dbj|D63929.1|GRAJCMB Graphiola cylindrica gene for 18S rRNA, par... 40 5.7 
>gb|DQ201158.1| Hordeum vulgare subsp. vulgare cultivar Morex phytochrome A mRNA,
            partial cds
          Length = 2485

 Score =  761 bits (384), Expect = 0.0
 Identities = 415/426 (97%), Gaps = 7/426 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    attcaagacttcttatgaccaagtttgcccaagtacatatcacagccataaaacacttac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 2438 attcaagacttcttatgaccaagtttgcccaagtacatatcacagccataaaacacttat 2379

                                                                        
Query: 61   gacgaagcatcaaacttgaaccttacacatacatattacatagtaggacggacgagaaga 120
            |||||||||||||||||||||||||||||||||||       ||||||||||||||||||
Sbjct: 2378 gacgaagcatcaaacttgaaccttacacatacata-------gtaggacggacgagaaga 2326

                                                                        
Query: 121  acacaacaacacatcacaagtacgtaaccaaaccgtgccacacaaccttcctttacccta 180
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2325 acacaacaacacagcacaagtacgtaaccaaaccgtgccacacaaccttcctttacccta 2266

                                                                        
Query: 181  gactgataactgatcctacaggccaacctttgcttcttcctttctgcattcacttaacac 240
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2265 gactgataactgatcctacaggccaacctttgcttctttctttctgcattcacttaacac 2206

                                                                        
Query: 241  tctaccacagcctgctgcaaccgcgtcgcatcttccccgcaagtcatcaccgtcgttcgc 300
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2205 tctaccacagcctgctgcaaccgcgccgcatcttccccgcaagtcatcaccgtcgttcgc 2146

                                                                        
Query: 301  tcatggttctttcgaaatgaagcatctgatgaccatgtgttgcacttgcttcttcatcac 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2145 tcatggttctttcgaaatgaagcatctgatgaccatgtgttgcacttgcttcttcatcac 2086

                                                                        
Query: 361  tgcctcattgccgttggagcacaagcaagttcggcggtgaggatgaagattgacataccg 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2085 tgcctcattgccgttggagcacaagcaagttcggcggtgaggatgaagattgacataccg 2026

                  
Query: 421  gcttcc 426
            ||||||
Sbjct: 2025 gcttcc 2020
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>gb|DQ201141.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai phytochrome A
            (PhyA) gene, complete cds
          Length = 6659

 Score =  593 bits (299), Expect = e-166
 Identities = 299/299 (100%)
 Strand = Plus / Minus

                                                                        
Query: 25   ttgcccaagtacatatcacagccataaaacacttacgacgaagcatcaaacttgaacctt 84
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6659 ttgcccaagtacatatcacagccataaaacacttacgacgaagcatcaaacttgaacctt 6600

                                                                        
Query: 85   acacatacatattacatagtaggacggacgagaagaacacaacaacacatcacaagtacg 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6599 acacatacatattacatagtaggacggacgagaagaacacaacaacacatcacaagtacg 6540

                                                                        
Query: 145  taaccaaaccgtgccacacaaccttcctttaccctagactgataactgatcctacaggcc 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6539 taaccaaaccgtgccacacaaccttcctttaccctagactgataactgatcctacaggcc 6480

                                                                        
Query: 205  aacctttgcttcttcctttctgcattcacttaacactctaccacagcctgctgcaaccgc 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6479 aacctttgcttcttcctttctgcattcacttaacactctaccacagcctgctgcaaccgc 6420

                                                                       
Query: 265  gtcgcatcttccccgcaagtcatcaccgtcgttcgctcatggttctttcgaaatgaagc 323
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6419 gtcgcatcttccccgcaagtcatcaccgtcgttcgctcatggttctttcgaaatgaagc 6361



 Score =  206 bits (104), Expect = 4e-50
 Identities = 104/104 (100%)
 Strand = Plus / Minus

                                                                        
Query: 323  catctgatgaccatgtgttgcacttgcttcttcatcactgcctcattgccgttggagcac 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5870 catctgatgaccatgtgttgcacttgcttcttcatcactgcctcattgccgttggagcac 5811

                                                        
Query: 383  aagcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5810 aagcaagttcggcggtgaggatgaagattgacataccggcttcc 5767
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>gb|DQ201140.1| Hordeum vulgare subsp. vulgare cultivar Morex phytochrome A (PhyA)
            gene, complete cds
          Length = 6652

 Score =  509 bits (257), Expect = e-141
 Identities = 288/299 (96%), Gaps = 7/299 (2%)
 Strand = Plus / Minus

                                                                        
Query: 25   ttgcccaagtacatatcacagccataaaacacttacgacgaagcatcaaacttgaacctt 84
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6652 ttgcccaagtacatatcacagccataaaacacttatgacgaagcatcaaacttgaacctt 6593

                                                                        
Query: 85   acacatacatattacatagtaggacggacgagaagaacacaacaacacatcacaagtacg 144
            |||||||||||       ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6592 acacatacata-------gtaggacggacgagaagaacacaacaacacagcacaagtacg 6540

                                                                        
Query: 145  taaccaaaccgtgccacacaaccttcctttaccctagactgataactgatcctacaggcc 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6539 taaccaaaccgtgccacacaaccttcctttaccctagactgataactgatcctacaggcc 6480

                                                                        
Query: 205  aacctttgcttcttcctttctgcattcacttaacactctaccacagcctgctgcaaccgc 264
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6479 aacctttgcttctttctttctgcattcacttaacactctaccacagcctgctgcaaccgc 6420

                                                                       
Query: 265  gtcgcatcttccccgcaagtcatcaccgtcgttcgctcatggttctttcgaaatgaagc 323
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6419 gccgcatcttccccgcaagtcatcaccgtcgttcgctcatggttctttcgaaatgaagc 6361



 Score =  206 bits (104), Expect = 4e-50
 Identities = 104/104 (100%)
 Strand = Plus / Minus

                                                                        
Query: 323  catctgatgaccatgtgttgcacttgcttcttcatcactgcctcattgccgttggagcac 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5870 catctgatgaccatgtgttgcacttgcttcttcatcactgcctcattgccgttggagcac 5811

                                                        
Query: 383  aagcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5810 aagcaagttcggcggtgaggatgaagattgacataccggcttcc 5767
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>gb|DQ201139.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo phytochrome A (PhyA)
            gene, complete cds
          Length = 6652

 Score =  509 bits (257), Expect = e-141
 Identities = 288/299 (96%), Gaps = 7/299 (2%)
 Strand = Plus / Minus

                                                                        
Query: 25   ttgcccaagtacatatcacagccataaaacacttacgacgaagcatcaaacttgaacctt 84
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6652 ttgcccaagtacatatcacagccataaaacacttatgacgaagcatcaaacttgaacctt 6593

                                                                        
Query: 85   acacatacatattacatagtaggacggacgagaagaacacaacaacacatcacaagtacg 144
            |||||||||||       ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6592 acacatacata-------gtaggacggacgagaagaacacaacaacacagcacaagtacg 6540

                                                                        
Query: 145  taaccaaaccgtgccacacaaccttcctttaccctagactgataactgatcctacaggcc 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6539 taaccaaaccgtgccacacaaccttcctttaccctagactgataactgatcctacaggcc 6480

                                                                        
Query: 205  aacctttgcttcttcctttctgcattcacttaacactctaccacagcctgctgcaaccgc 264
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6479 aacctttgcttctttctttctgcattcacttaacactctaccacagcctgctgcaaccgc 6420

                                                                       
Query: 265  gtcgcatcttccccgcaagtcatcaccgtcgttcgctcatggttctttcgaaatgaagc 323
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6419 gccgcatcttccccgcaagtcatcaccgtcgttcgctcatggttctttcgaaatgaagc 6361



 Score =  206 bits (104), Expect = 4e-50
 Identities = 104/104 (100%)
 Strand = Plus / Minus

                                                                        
Query: 323  catctgatgaccatgtgttgcacttgcttcttcatcactgcctcattgccgttggagcac 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5870 catctgatgaccatgtgttgcacttgcttcttcatcactgcctcattgccgttggagcac 5811

                                                        
Query: 383  aagcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5810 aagcaagttcggcggtgaggatgaagattgacataccggcttcc 5767
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>emb|AJ313099.1|TAE313099 Triticum aestivum phya1 gene for phytochrome A, exons 1-4
          Length = 6323

 Score =  117 bits (59), Expect = 3e-23
 Identities = 80/87 (91%)
 Strand = Plus / Minus

                                                                        
Query: 340  ttgcacttgcttcttcatcactgcctcattgccgttggagcacaagcaagttcggcggtg 399
            ||||||| |||||||||||| |||  ||| ||||||||||||||||||||||||||||||
Sbjct: 6000 ttgcactggcttcttcatcagtgctccatggccgttggagcacaagcaagttcggcggtg 5941

                                       
Query: 400  aggatgaagattgacataccggcttcc 426
            |||||||||||||||| ||| ||||||
Sbjct: 5940 aggatgaagattgacacaccagcttcc 5914
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>emb|X03243.1|ASAP4R Avena sativa mRNA for phytochrome (AP4)
          Length = 3705

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 77/91 (84%), Gaps = 3/91 (3%)
 Strand = Plus / Minus

                                                                        
Query: 325  tctgatgaccatgtgttgcacttgcttcttcatcactgcctcattgccgttggagcacaa 384
            |||||||||||| ||||||||| ||||| ||||   || |  ||||| ||||||||  ||
Sbjct: 3476 tctgatgaccatatgttgcactggcttcatcat---tgtccgattgctgttggagccgaa 3420

                                           
Query: 385  gcaagttcggcggtgaggatgaagattgaca 415
            |||||||| ||||||||||||||| ||||||
Sbjct: 3419 gcaagttcagcggtgaggatgaaggttgaca 3389
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>gb|AF377946.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone
              OSJNBa0031O09, complete sequence
          Length = 161339

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                  
Query: 375    tggagcacaagcaagttcggcggtgaggatgaagattgacataccggcttcc 426
              ||||||| ||||||||||| || ||||||||||| ||||||| || ||||||
Sbjct: 140937 tggagcagaagcaagttcgacgctgaggatgaaggttgacatgccagcttcc 140988
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>gb|AC147426.2| Oryza sativa chromosome 3  B1377B10 genomic sequence, complete sequence
          Length = 184366

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                 
Query: 375   tggagcacaagcaagttcggcggtgaggatgaagattgacataccggcttcc 426
             ||||||| ||||||||||| || ||||||||||| ||||||| || ||||||
Sbjct: 58920 tggagcagaagcaagttcgacgctgaggatgaaggttgacatgccagcttcc 58971
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 375      tggagcacaagcaagttcggcggtgaggatgaagattgacataccggcttcc 426
                ||||||| ||||||||||| || ||||||||||| ||||||| || ||||||
Sbjct: 28875625 tggagcagaagcaagttcgacgctgaggatgaaggttgacatgccagcttcc 28875676
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>dbj|AB109891.1| Oryza sativa (japonica cultivar-group) PHYA mRNA for phytochrome A,
            complete cds
          Length = 3866

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 375  tggagcacaagcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||| ||||||||||| || ||||||||||| ||||||| || ||||||
Sbjct: 3522 tggagcagaagcaagttcgacgctgaggatgaaggttgacatgccagcttcc 3471
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                    
Query: 375      tggagcacaagcaagttcggcggtgaggatgaagattgacataccggcttcc 426
                ||||||| ||||||||||| || ||||||||||| ||||||| || ||||||
Sbjct: 28967047 tggagcagaagcaagttcgacgctgaggatgaaggttgacatgccagcttcc 28967098
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>emb|X14172.1|OSPHY18 Rice phy 18 gene for phytochrome
          Length = 9979

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 375  tggagcacaagcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||| ||||||||||| || ||||||||||| ||||||| || ||||||
Sbjct: 8608 tggagcagaagcaagttcgacgctgaggatgaaggttgacatgccagcttcc 8557
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>dbj|AK072482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125J06, full
            insert sequence
          Length = 3903

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 375  tggagcacaagcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||| ||||||||||| || ||||||||||| ||||||| || ||||||
Sbjct: 3570 tggagcagaagcaagttcgacgctgaggatgaaggttgacatgccagcttcc 3519
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>gb|AY466083.1| Sorghum propinquum phytochrome A (PHYA) gene, complete cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
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>gb|AY466082.1| Sorghum x drummondii voucher PI302233 phytochrome A (PHYA) gene,
            complete cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
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>gb|AY466081.1| Sorghum arundinaceum voucher PI302233 phytochrome A (PHYA) gene,
            complete cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
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>gb|AY466080.1| Sorghum arundinaceum voucher PI225905 phytochrome A (PHYA) gene,
            complete cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
to top
>gb|AY466079.1| Sorghum arundinaceum voucher IS14485 phytochrome A (PHYA) gene,
            complete cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
to top
>gb|AY466078.1| Sorghum arundinaceum voucher PI302105 phytochrome A (PHYA) gene,
            complete cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
to top
>gb|AY466077.1| Sorghum arundinaceum voucher IS14567 phytochrome A (PHYA) gene,
            complete cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
to top
>gb|AY466076.1| Sorghum arundinaceum voucher IS14503 phytochrome A (PHYA) gene,
            complete cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
to top
>gb|AY466075.1| Sorghum arundinaceum voucher PI213900 phytochrome A (PHYA) gene,
            complete cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
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>gb|AY466074.1| Sorghum arundinaceum voucher IS14569 phytochrome A (PHYA) gene,
            complete cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
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>gb|AY466073.1| Sorghum bicolor phytochrome A (PHYA) gene, complete cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
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>gb|AY466072.1| Sorghum bicolor isolate PHYA-RTx430 phytochrome A (PHYA) gene,
            complete cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
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>gb|AY466071.1| Sorghum bicolor voucher NSL83707 phytochrome A (PHYA) gene, complete
            cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
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>gb|AY466070.1| Sorghum bicolor voucher PI152593 phytochrome A (PHYA) gene, complete
            cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
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>gb|AY466069.1| Sorghum bicolor voucher PI229835 phytochrome A (PHYA) gene, complete
            cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
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>gb|AY466068.1| Sorghum bicolor voucher PI153800 phytochrome A (PHYA) gene, complete
            cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
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>gb|AY466067.1| Sorghum bicolor voucher PI267380 phytochrome A (PHYA) gene, complete
            cds
          Length = 3834

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3807 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3765
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>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence
          Length = 152439

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 384    agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
              ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 134104 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 134146
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>gb|U56729.1|SBU56729 Sorghum bicolor phytochrome A (PHYA) mRNA, complete cds
          Length = 3805

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 384  agcaagttcggcggtgaggatgaagattgacataccggcttcc 426
            ||||||||| || |||||||||||| ||||||| || ||||||
Sbjct: 3606 agcaagttcagcagtgaggatgaaggttgacatgccagcttcc 3564
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>ref|XM_592363.2| PREDICTED: Bos taurus similar to epidermal growth factor receptor
            pathway substrate 8-like protein 1 isoform a (LOC514504),
            mRNA
          Length = 2549

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 346  ttgcttcttcatcactgcctca 367
            ||||||||||||||||||||||
Sbjct: 2214 ttgcttcttcatcactgcctca 2193
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>gb|AC069133.6| Homo sapiens BAC clone RP11-579E24 from 8, complete sequence
          Length = 201146

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 222    ttctgcattcacttaacactct 243
              ||||||||||||||||||||||
Sbjct: 138696 ttctgcattcacttaacactct 138717
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>gb|AC068863.6| Homo sapiens chromosome 2, clone CTD-2170C4, complete sequence
          Length = 101618

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 222   ttctgcattcacttaacactct 243
             ||||||||||||||||||||||
Sbjct: 83287 ttctgcattcacttaacactct 83266
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>gb|AC132597.3| Mus musculus BAC clone RP24-180D17 from chromosome 5, complete sequence
          Length = 162871

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 82    cttacacatacatattacata 102
             |||||||||||||||||||||
Sbjct: 88024 cttacacatacatattacata 88044
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>gb|AY803752.1| Tilletiaria anomala isolate AFTOL-ID 865 18S ribosomal RNA gene,
            complete sequence
          Length = 1783

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   atgaccaagtttgcccaagt 34
            ||||||||||||||||||||
Sbjct: 1737 atgaccaagtttgcccaagt 1718
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>gb|AC147708.7| Canis Familiaris, clone XX-25G10, complete sequence
          Length = 185084

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   tcttcctttctgcattcact 234
             ||||||||||||||||||||
Sbjct: 22502 tcttcctttctgcattcact 22483
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>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome
          Length = 1937111

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 204     caacctttgcttcttccttt 223
               ||||||||||||||||||||
Sbjct: 1417000 caacctttgcttcttccttt 1417019
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>gb|AC102358.5| Mus musculus chromosome 8, clone RP23-451H9, complete sequence
          Length = 202151

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   aacctttgcttcttcctttc 224
             ||||||||||||||||||||
Sbjct: 76548 aacctttgcttcttcctttc 76567
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>gb|AC140055.4| Mus musculus BAC clone RP23-52F4 from chromosome 7, complete sequence
          Length = 192288

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   ctttgcttcttcctttctgc 227
             ||||||||||||||||||||
Sbjct: 35865 ctttgcttcttcctttctgc 35884
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>gb|AC124731.5| Mus musculus BAC clone RP23-287B7 from 3, complete sequence
          Length = 201529

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    tctgcattcacttaacactc 242
              ||||||||||||||||||||
Sbjct: 103698 tctgcattcacttaacactc 103679
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>gb|AC121866.2| Mus musculus BAC clone RP24-114G1 from 8, complete sequence
          Length = 162835

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    aacctttgcttcttcctttc 224
              ||||||||||||||||||||
Sbjct: 122112 aacctttgcttcttcctttc 122131
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>gb|AC122730.27| Medicago truncatula clone mth2-36p5, complete sequence
          Length = 127163

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   acctttgcttcttcctttct 225
             ||||||||||||||||||||
Sbjct: 81280 acctttgcttcttcctttct 81261
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>gb|AY267353.1| Chara vulgaris mitochondrion, complete genome
          Length = 67737

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   cctttgcttcttcctttctg 226
             ||||||||||||||||||||
Sbjct: 17158 cctttgcttcttcctttctg 17177
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>emb|AL135786.17| Human DNA sequence from clone RP11-12D24 on chromosome 9p23-24.3 Contains
              the RLN1 gene for relaxin 1(H1) (RLXH1),the RLN2 gene for
              relaxin 2 (H2) (RLXH2), a  high-mobility group nucleosomal
              binding domain 2 (HMGN2) pseudogene, a  novel pseudogene,
              the gene for uncharacterized hematopoietic stem/progenitor
              cells protein (MDS030), a novel pseudogene (FLJ39176) and
              four CpG islands, complete sequence
          Length = 156592

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     ttacacatacatattacata 102
              ||||||||||||||||||||
Sbjct: 126048 ttacacatacatattacata 126029
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>emb|AL132776.11|HSJ393D12 Human DNA sequence from clone RP3-393D12 on chromosome 6q16.1-16.3
             Contains the 3' end of gene KIAA0776 and the gene for a
             LIM domains containing protein (activator of CREM in
             testis), complete sequence
          Length = 92817

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   cttcttcctttctgcattca 232
             ||||||||||||||||||||
Sbjct: 39209 cttcttcctttctgcattca 39228
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>emb|Z47978.1|BSL22RPRT B.subtilis gene for ribosomal protein L22
          Length = 342

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  atcaaacttgaaccttacac 88
           ||||||||||||||||||||
Sbjct: 99  atcaaacttgaaccttacac 118
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>gb|AY741382.1| Wallemia ichthyophaga strain CBS 113033 18S small subunit ribosomal
            RNA gene, partial sequence
          Length = 1672

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   atgaccaagtttgcccaagt 34
            ||||||||||||||||||||
Sbjct: 1625 atgaccaagtttgcccaagt 1606
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>emb|BX323843.9| Zebrafish DNA sequence from clone CH211-10A23 in linkage group 19,
             complete sequence
          Length = 128245

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    ttacacatacatattacata 102
             ||||||||||||||||||||
Sbjct: 71981 ttacacatacatattacata 71962
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>gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, complete sequence
          Length = 202381

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   cacaacaacacatcacaagt 141
             ||||||||||||||||||||
Sbjct: 32567 cacaacaacacatcacaagt 32586
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>dbj|AB045706.1| Tilletiopsis penniseti gene for 18S rRNA, partial sequence
          Length = 1754

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   atgaccaagtttgcccaagt 34
            ||||||||||||||||||||
Sbjct: 1719 atgaccaagtttgcccaagt 1700
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>dbj|AB045705.1| Tilletiopsis oryzicola gene for 18S rRNA, partial sequence
          Length = 3318

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   atgaccaagtttgcccaagt 34
            ||||||||||||||||||||
Sbjct: 2027 atgaccaagtttgcccaagt 2008
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>dbj|AB045704.1| Tilletiopsis derxii gene for 18S rRNA, partial sequence
          Length = 1776

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   atgaccaagtttgcccaagt 34
            ||||||||||||||||||||
Sbjct: 1717 atgaccaagtttgcccaagt 1698
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>dbj|AB045703.1| Tilletiopsis flava gene for 18S rRNA, partial sequence
          Length = 2842

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   atgaccaagtttgcccaagt 34
            ||||||||||||||||||||
Sbjct: 2348 atgaccaagtttgcccaagt 2329
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>dbj|D83193.1| Tilletiaria anomala 18S rRNA gene, partial sequence
          Length = 1749

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   atgaccaagtttgcccaagt 34
            ||||||||||||||||||||
Sbjct: 1714 atgaccaagtttgcccaagt 1695
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>dbj|D83190.1| Tilletiopsis minor 18S rRNA gene, partial sequence
          Length = 1727

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   atgaccaagtttgcccaagt 34
            ||||||||||||||||||||
Sbjct: 1698 atgaccaagtttgcccaagt 1679
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>dbj|D83189.1| Tilletiopsis fulvescens 18S rRNA gene, partial sequence
          Length = 1749

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   atgaccaagtttgcccaagt 34
            ||||||||||||||||||||
Sbjct: 1714 atgaccaagtttgcccaagt 1695
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>dbj|D83188.1| Tilletiopsis albescens 18S rRNA gene, partial sequence
          Length = 1751

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   atgaccaagtttgcccaagt 34
            ||||||||||||||||||||
Sbjct: 1716 atgaccaagtttgcccaagt 1697
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>dbj|D82819.1| Tilletiopsis flava 18S rRNA gene, partial sequence
          Length = 2871

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   atgaccaagtttgcccaagt 34
            ||||||||||||||||||||
Sbjct: 2399 atgaccaagtttgcccaagt 2380
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>emb|X03242.1|ASAP3R Avena sativa mRNA for phytochrome (AP3)
          Length = 3696

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 70   tcaaacttgaaccttacaca 89
            ||||||||||||||||||||
Sbjct: 3651 tcaaacttgaaccttacaca 3632
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>dbj|D63929.1|GRAJCMB Graphiola cylindrica gene for 18S rRNA, partial sequence, strain:
            IAM14327
          Length = 1763

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   atgaccaagtttgcccaagt 34
            ||||||||||||||||||||
Sbjct: 1728 atgaccaagtttgcccaagt 1709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,720,489
Number of Sequences: 3902068
Number of extensions: 3720489
Number of successful extensions: 70903
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70775
Number of HSP's gapped (non-prelim): 127
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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