ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome... 40 1.7
2gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 38 6.8
3gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 38 6.8
4gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 38 6.8
5ref|XM_454932.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E21780g ... 38 6.8
6gb|CP000001.1| Bacillus cereus E33L, complete genome 38 6.8
7gb|AC164158.3| Mus musculus BAC clone RP24-263G24 from chromosom... 38 6.8
8emb|AL445923.10| Human DNA sequence from clone RP11-117N4 on chr... 38 6.8
9emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 38 6.8
10emb|BX571811.5| Zebrafish DNA sequence from clone CH211-194P6, c... 38 6.8
11gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosom... 38 6.8
12emb|BX649532.7| Zebrafish DNA sequence from clone CH211-260H3 in... 38 6.8
13gb|AF093649.1|AF093649 Linum usitatissimum flax rust resistance ... 38 6.8
14gb|AF093647.1|AF093647 Linum usitatissimum flax rust resistance ... 38 6.8
15gb|AF093645.1|AF093645 Linum usitatissimum flax rust resistance ... 38 6.8
16gb|AF093644.1|AF093644 Linum usitatissimum flax rust resistance ... 38 6.8
17gb|AF093643.1|AF093643 Linum usitatissimum flax rust resistance ... 38 6.8
18gb|AF093642.1|AF093642 Linum usitatissimum flax rust resistance ... 38 6.8
19gb|AF093640.1|AF093640 Linum usitatissimum flax rust resistance ... 38 6.8
20gb|AF093639.1|AF093639 Linum usitatissimum flax rust resistance ... 38 6.8
21gb|AF093638.1|AF093638 Linum usitatissimum flax rust resistance ... 38 6.8
22gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 38 6.8

>gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome 9, complete sequence
          Length = 178827

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    attatcaacatgcagtaaac 68
             ||||||||||||||||||||
Sbjct: 64434 attatcaacatgcagtaaac 64415



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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 41      taataagcattatcaacat 59
               |||||||||||||||||||
Sbjct: 4992748 taataagcattatcaacat 4992730



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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 41      taataagcattatcaacat 59
               |||||||||||||||||||
Sbjct: 4986259 taataagcattatcaacat 4986241



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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 41      taataagcattatcaacat 59
               |||||||||||||||||||
Sbjct: 4987470 taataagcattatcaacat 4987452



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>ref|XM_454932.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E21780g predicted mRNA
          Length = 3051

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 40   ttaataagcattatcaaca 58
            |||||||||||||||||||
Sbjct: 1310 ttaataagcattatcaaca 1328



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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 41      taataagcattatcaacat 59
               |||||||||||||||||||
Sbjct: 5047987 taataagcattatcaacat 5047969



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>gb|AC164158.3| Mus musculus BAC clone RP24-263G24 from chromosome 7, complete sequence
          Length = 200983

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 13     agtaattttccatcttaca 31
              |||||||||||||||||||
Sbjct: 153870 agtaattttccatcttaca 153852



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>emb|AL445923.10| Human DNA sequence from clone RP11-117N4 on chromosome 13 Contains a
              ribosomal protein S10 (RPS10) pseudogene, complete sequence
          Length = 154726

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 61     cagtaaactaaacaacaac 79
              |||||||||||||||||||
Sbjct: 130056 cagtaaactaaacaacaac 130074



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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 40      ttaataagcattatcaaca 58
               |||||||||||||||||||
Sbjct: 1938179 ttaataagcattatcaaca 1938161



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>emb|BX571811.5| Zebrafish DNA sequence from clone CH211-194P6, complete sequence
          Length = 219044

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 38     aattaataagcattatcaa 56
              |||||||||||||||||||
Sbjct: 202149 aattaataagcattatcaa 202167



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>gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosome 7, complete sequence
          Length = 166576

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 13     agtaattttccatcttaca 31
              |||||||||||||||||||
Sbjct: 147909 agtaattttccatcttaca 147927



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>emb|BX649532.7| Zebrafish DNA sequence from clone CH211-260H3 in linkage group 20,
             complete sequence
          Length = 159939

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    aattaataagcattatcaa 56
             |||||||||||||||||||
Sbjct: 47866 aattaataagcattatcaa 47848



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>gb|AF093649.1|AF093649 Linum usitatissimum flax rust resistance protein (L) gene, LH allele,
            complete cds
          Length = 6166

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   aaacaacaacgatcgaaac 88
            |||||||||||||||||||
Sbjct: 2634 aaacaacaacgatcgaaac 2616



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>gb|AF093647.1|AF093647 Linum usitatissimum flax rust resistance protein (L) gene, L8 allele,
            complete cds
          Length = 3342

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   aaacaacaacgatcgaaac 88
            |||||||||||||||||||
Sbjct: 1341 aaacaacaacgatcgaaac 1323



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>gb|AF093645.1|AF093645 Linum usitatissimum flax rust resistance protein (L) gene, L5 allele,
            complete cds
          Length = 4651

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   aaacaacaacgatcgaaac 88
            |||||||||||||||||||
Sbjct: 1341 aaacaacaacgatcgaaac 1323



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>gb|AF093644.1|AF093644 Linum usitatissimum flax rust resistance protein (L) gene, L4 allele,
            complete cds
          Length = 4637

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   aaacaacaacgatcgaaac 88
            |||||||||||||||||||
Sbjct: 1341 aaacaacaacgatcgaaac 1323



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>gb|AF093643.1|AF093643 Linum usitatissimum flax rust resistance protein (L) gene, L3 allele,
            complete cds
          Length = 4637

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   aaacaacaacgatcgaaac 88
            |||||||||||||||||||
Sbjct: 1341 aaacaacaacgatcgaaac 1323



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>gb|AF093642.1|AF093642 Linum usitatissimum flax rust resistance protein (L) gene, L2 allele,
            complete cds
          Length = 5479

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   aaacaacaacgatcgaaac 88
            |||||||||||||||||||
Sbjct: 1341 aaacaacaacgatcgaaac 1323



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>gb|AF093640.1|AF093640 Linum usitatissimum flax rust resistance protein (L) gene, L10
            allele, complete cds
          Length = 4637

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   aaacaacaacgatcgaaac 88
            |||||||||||||||||||
Sbjct: 1341 aaacaacaacgatcgaaac 1323



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>gb|AF093639.1|AF093639 Linum usitatissimum flax rust resistance protein (L) gene, L1 allele,
            complete cds
          Length = 3680

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   aaacaacaacgatcgaaac 88
            |||||||||||||||||||
Sbjct: 1341 aaacaacaacgatcgaaac 1323



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>gb|AF093638.1|AF093638 Linum usitatissimum flax rust resistance protein (L) gene, L allele,
            complete cds
          Length = 4627

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   aaacaacaacgatcgaaac 88
            |||||||||||||||||||
Sbjct: 1338 aaacaacaacgatcgaaac 1320



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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 41      taataagcattatcaacat 59
               |||||||||||||||||||
Sbjct: 4986133 taataagcattatcaacat 4986115


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 996,860
Number of Sequences: 3902068
Number of extensions: 996860
Number of successful extensions: 65673
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65534
Number of HSP's gapped (non-prelim): 139
length of query: 143
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 122
effective length of database: 17,151,101,840
effective search space: 2092434424480
effective search space used: 2092434424480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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