ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017729.1| Zea mays clone EL01N0447H11.c mRNA sequence 163 6e-37
2gb|AY109701.1| Zea mays CL33539_1 mRNA sequence 163 6e-37
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
4dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
5dbj|AK072600.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
6ref|NM_191124.1| Oryza sativa (japonica cultivar-group), predic... 141 2e-30
7gb|AC145331.19| Medicago truncatula clone mth2-8o7, complete seq... 48 0.025
8gb|AC147471.14| Medicago truncatula clone mth2-7a7, complete seq... 48 0.025
9gb|AC158193.2| Selaginella moellendorffii clone JGIASXY-5P19, co... 44 0.38
10gb|AY747628.1| Rattus norvegicus Ly49 stimulatory receptor 3 var... 42 1.5
11ref|NM_153726.1| Rattus norvegicus Ly-49 stimulatory receptor 3 ... 42 1.5
12gb|AC165253.2| Mus musculus BAC clone RP23-413P10 from chromosom... 42 1.5
13gb|AY523969.1| Homo sapiens catenin (cadherin-associated protein... 42 1.5
14emb|AL354797.16| Human DNA sequence from clone RP11-115J22 on ch... 42 1.5
15gb|AY102036.1| Rattus norvegicus Ly49 stimulatory receptor 3 (Ly... 42 1.5
16gb|AC138200.10| Mus musculus chromosome 3, clone RP23-438J19, co... 42 1.5
17gb|DQ214151.1| Taeniopygia guttata clone 0061P0030A03 NADH dehyd... 40 6.0
18ref|XM_518625.1| PREDICTED: Pan troglodytes zinc finger protein ... 40 6.0
19ref|XM_472789.1| Oryza sativa (japonica cultivar-group), predic... 40 6.0
20gb|AC110496.12| Mus musculus chromosome 7, clone RP23-56P3, comp... 40 6.0
21gb|AC118476.15| Mus musculus chromosome 9, clone RP23-242K3, com... 40 6.0
22gb|AC161037.3| Mus musculus chromosome 7, clone RP24-255H18, com... 40 6.0
23emb|AL139274.17| Human DNA sequence from clone RP11-393I2 on chr... 40 6.0
24gb|AC158232.2| Mus musculus BAC clone RP24-200M15 from chromosom... 40 6.0
25gb|AC112651.4| Homo sapiens X BAC RP13-302M16 (Roswell Park Canc... 40 6.0
26dbj|AK127835.1| Homo sapiens cDNA FLJ45938 fis, clone PLACE70051... 40 6.0
27ref|XM_938563.1| PREDICTED: Homo sapiens zinc finger protein 292... 40 6.0
28ref|XM_048070.5| PREDICTED: Homo sapiens zinc finger protein 292... 40 6.0
29gb|BC016386.1|BC016386 Homo sapiens, clone IMAGE:4720111, mRNA 40 6.0
30gb|DQ311345.1| Bombyx mori chromatin modifying protein 1b mRNA, ... 40 6.0
31emb|BX649440.3| Zebrafish DNA sequence from clone CH211-198M12 i... 40 6.0
32emb|BX470072.8| Zebrafish DNA sequence from clone DKEY-163I6 in ... 40 6.0
33dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
34emb|BX537746.1|HSM805829 Homo sapiens mRNA; cDNA DKFZp686P0262 (... 40 6.0
35emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 40 6.0
36emb|AL117187.7|CNS01DRD Human chromosome 14 DNA sequence BAC R-7... 40 6.0
37emb|AL683857.8| Mouse DNA sequence from clone RP23-46O18 on chro... 40 6.0
38gb|DQ063336.1| Alligator mississippiensis Chompy miniature inver... 40 6.0
39emb|AL832366.1|HSM803674 Homo sapiens mRNA; cDNA DKFZp451P076 (f... 40 6.0
40dbj|AB011102.1| Homo sapiens mRNA for KIAA0530 protein, partial cds 40 6.0 
>gb|BT017729.1| Zea mays clone EL01N0447H11.c mRNA sequence
          Length = 981

 Score =  163 bits (82), Expect = 6e-37
 Identities = 127/142 (89%)
 Strand = Plus / Minus

                                                                       
Query: 304 tgtttaccaatagtctttgcaagagcacaaaccattttcaaaatggtggaacctctttgc 363
           ||||||||| |||||||||||||| |||| ||||||||| || |||||||||||||||||
Sbjct: 619 tgtttaccagtagtctttgcaagaacacacaccattttcgaagtggtggaacctctttgc 560

                                                                       
Query: 364 gtccctcgcaatgatctgacggccaacaagcttagagattatcttcaaagctgtgtggca 423
            ||||| |||||||||||||| |||||||| || ||||||||||| ||||| ||||| ||
Sbjct: 559 atcccttgcaatgatctgacgtccaacaagttttgagattatcttgaaagccgtgtgaca 500

                                 
Query: 424 atcaccacaggagcgaagattc 445
           ||| |||||||| |||||||||
Sbjct: 499 atccccacaggatcgaagattc 478
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>gb|AY109701.1| Zea mays CL33539_1 mRNA sequence
          Length = 589

 Score =  163 bits (82), Expect = 6e-37
 Identities = 127/142 (89%)
 Strand = Plus / Plus

                                                                       
Query: 304 tgtttaccaatagtctttgcaagagcacaaaccattttcaaaatggtggaacctctttgc 363
           ||||||||| |||||||||||||| |||| ||||||||| || |||||||||||||||||
Sbjct: 341 tgtttaccagtagtctttgcaagaacacacaccattttcgaagtggtggaacctctttgc 400

                                                                       
Query: 364 gtccctcgcaatgatctgacggccaacaagcttagagattatcttcaaagctgtgtggca 423
            ||||| |||||||||||||| |||||||| || ||||||||||| ||||| ||||| ||
Sbjct: 401 atcccttgcaatgatctgacgtccaacaagttttgagattatcttgaaagccgtgtgaca 460

                                 
Query: 424 atcaccacaggagcgaagattc 445
           ||| |||||||| |||||||||
Sbjct: 461 atccccacaggatcgaagattc 482
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  147 bits (74), Expect = 4e-32
 Identities = 125/142 (88%)
 Strand = Plus / Minus

                                                                            
Query: 304      tgtttaccaatagtctttgcaagagcacaaaccattttcaaaatggtggaacctctttgc 363
                ||||||||||||||||||||||||||| | |||||| ||||||||||| || ||||||||
Sbjct: 30775678 tgtttaccaatagtctttgcaagagcatacaccattctcaaaatggtgaaatctctttgc 30775619

                                                                            
Query: 364      gtccctcgcaatgatctgacggccaacaagcttagagattatcttcaaagctgtgtggca 423
                 ||||| |||||||||  ||| ||||| || ||||||||||||||||||||||| || ||
Sbjct: 30775618 atcccttgcaatgatcaaacgaccaacgagtttagagattatcttcaaagctgtatgaca 30775559

                                      
Query: 424      atcaccacaggagcgaagattc 445
                ||| ||||| ||||| ||||||
Sbjct: 30775558 atctccacatgagcgtagattc 30775537



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 229      taccttcaggatttacacaaccgattttggtt 260
                ||||||| |||||||||||||| ||| |||||
Sbjct: 30775749 taccttctggatttacacaacctattgtggtt 30775718
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>dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0021A09
          Length = 127973

 Score =  147 bits (74), Expect = 4e-32
 Identities = 125/142 (88%)
 Strand = Plus / Minus

                                                                         
Query: 304   tgtttaccaatagtctttgcaagagcacaaaccattttcaaaatggtggaacctctttgc 363
             ||||||||||||||||||||||||||| | |||||| ||||||||||| || ||||||||
Sbjct: 64953 tgtttaccaatagtctttgcaagagcatacaccattctcaaaatggtgaaatctctttgc 64894

                                                                         
Query: 364   gtccctcgcaatgatctgacggccaacaagcttagagattatcttcaaagctgtgtggca 423
              ||||| |||||||||  ||| ||||| || ||||||||||||||||||||||| || ||
Sbjct: 64893 atcccttgcaatgatcaaacgaccaacgagtttagagattatcttcaaagctgtatgaca 64834

                                   
Query: 424   atcaccacaggagcgaagattc 445
             ||| ||||| ||||| ||||||
Sbjct: 64833 atctccacatgagcgtagattc 64812



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 229   taccttcaggatttacacaaccgattttggtt 260
             ||||||| |||||||||||||| ||| |||||
Sbjct: 65024 taccttctggatttacacaacctattgtggtt 64993
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>dbj|AK072600.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130A18, full
            insert sequence
          Length = 2854

 Score =  147 bits (74), Expect = 4e-32
 Identities = 125/142 (88%)
 Strand = Plus / Minus

                                                                        
Query: 304  tgtttaccaatagtctttgcaagagcacaaaccattttcaaaatggtggaacctctttgc 363
            ||||||||||||||||||||||||||| | |||||| ||||||||||| || ||||||||
Sbjct: 2548 tgtttaccaatagtctttgcaagagcatacaccattctcaaaatggtgaaatctctttgc 2489

                                                                        
Query: 364  gtccctcgcaatgatctgacggccaacaagcttagagattatcttcaaagctgtgtggca 423
             ||||| |||||||||  ||| ||||| || ||||||||||||||||||||||| || ||
Sbjct: 2488 atcccttgcaatgatcaaacgaccaacgagtttagagattatcttcaaagctgtatgaca 2429

                                  
Query: 424  atcaccacaggagcgaagattc 445
            ||| ||||| ||||| ||||||
Sbjct: 2428 atctccacatgagcgtagattc 2407



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 229  taccttcaggatttacacaaccgattttggtt 260
            ||||||| |||||||||||||| ||| |||||
Sbjct: 2619 taccttctggatttacacaacctattgtggtt 2588
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>ref|NM_191124.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2391

 Score =  141 bits (71), Expect = 2e-30
 Identities = 122/139 (87%)
 Strand = Plus / Minus

                                                                        
Query: 307  ttaccaatagtctttgcaagagcacaaaccattttcaaaatggtggaacctctttgcgtc 366
            |||||||||||||||||||||||| | |||||| ||||||||||| || |||||||| ||
Sbjct: 2391 ttaccaatagtctttgcaagagcatacaccattctcaaaatggtgaaatctctttgcatc 2332

                                                                        
Query: 367  cctcgcaatgatctgacggccaacaagcttagagattatcttcaaagctgtgtggcaatc 426
            ||| |||||||||  ||| ||||| || ||||||||||||||||||||||| || |||||
Sbjct: 2331 ccttgcaatgatcaaacgaccaacgagtttagagattatcttcaaagctgtatgacaatc 2272

                               
Query: 427  accacaggagcgaagattc 445
             ||||| ||||| ||||||
Sbjct: 2271 tccacatgagcgtagattc 2253
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>gb|AC145331.19| Medicago truncatula clone mth2-8o7, complete sequence
          Length = 115348

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 307   ttaccaatagtctttgcaagagcacaaaccattttcaaaatggtggaa 354
             ||||||| ||||| | ||||||||||||||||| |  |||||||||||
Sbjct: 17180 ttaccaaaagtctctacaagagcacaaaccattcttgaaatggtggaa 17133
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>gb|AC147471.14| Medicago truncatula clone mth2-7a7, complete sequence
          Length = 139792

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 307   ttaccaatagtctttgcaagagcacaaaccattttcaaaatggtggaa 354
             ||||||| ||||| | ||||||||||||||||| |  |||||||||||
Sbjct: 67915 ttaccaaaagtctctacaagagcacaaaccattcttgaaatggtggaa 67962
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>gb|AC158193.2| Selaginella moellendorffii clone JGIASXY-5P19, complete sequence
          Length = 29585

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 309   accaatagtctttgcaagagca 330
             ||||||||||||||||||||||
Sbjct: 19307 accaatagtctttgcaagagca 19328
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>gb|AY747628.1| Rattus norvegicus Ly49 stimulatory receptor 3 variant (Ly49s3)
           mRNA, complete cds, alternatively spliced
          Length = 1465

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 10  catgaactacagaatactcacaaac 34
           |||||||||||||| ||||||||||
Sbjct: 405 catgaactacagaaaactcacaaac 429
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>ref|NM_153726.1| Rattus norvegicus Ly-49 stimulatory receptor 3 (Ly49s3), mRNA
          Length = 1420

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 10  catgaactacagaatactcacaaac 34
           |||||||||||||| ||||||||||
Sbjct: 354 catgaactacagaaaactcacaaac 378
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>gb|AC165253.2| Mus musculus BAC clone RP23-413P10 from chromosome 9, complete sequence
          Length = 200549

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 417    tgtggcaatcaccacaggagc 437
              |||||||||||||||||||||
Sbjct: 194627 tgtggcaatcaccacaggagc 194607
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>gb|AY523969.1| Homo sapiens catenin (cadherin-associated protein), alpha-like 1
            (CTNNAL1) gene, complete cds
          Length = 74429

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 330  acaaaccattttcaaaatggt 350
            |||||||||||||||||||||
Sbjct: 6896 acaaaccattttcaaaatggt 6876
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>emb|AL354797.16| Human DNA sequence from clone RP11-115J22 on chromosome 9q31.3-33.2
              Contains the 5' end of the IKBKAP gene encoding inhibitor
              of kappa light polypeptide gene enhancer in B-cells (kinase
              complex-associated protein (IKAP)), the C9orf6 gene for
              chromosome 9 open reading frame 6, the 5' end of the C9orf5
              gene for chromosome 9 open reading frame 5, the 3' end of
              the CTNNAL1 gene encoding Catenin (cadherin-associated
              protein) alpha-like 1, and two CpG islands, complete
              sequence
          Length = 188134

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 330    acaaaccattttcaaaatggt 350
              |||||||||||||||||||||
Sbjct: 104003 acaaaccattttcaaaatggt 104023
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>gb|AY102036.1| Rattus norvegicus Ly49 stimulatory receptor 3 (Ly49s3) mRNA,
           complete cds
          Length = 1420

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 10  catgaactacagaatactcacaaac 34
           |||||||||||||| ||||||||||
Sbjct: 354 catgaactacagaaaactcacaaac 378
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>gb|AC138200.10| Mus musculus chromosome 3, clone RP23-438J19, complete sequence
          Length = 183803

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 4      aacaagcatgaactacagaat 24
              |||||||||||||||||||||
Sbjct: 119717 aacaagcatgaactacagaat 119737
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>gb|DQ214151.1| Taeniopygia guttata clone 0061P0030A03 NADH dehydrogenase
           (ubiquinone) 1 alpha subcomplex 5-like mRNA, complete
           sequence
          Length = 450

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 337 attttcaaaatggtggaacctctt 360
           ||||||||||||||| ||||||||
Sbjct: 371 attttcaaaatggtgtaacctctt 394
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>ref|XM_518625.1| PREDICTED: Pan troglodytes zinc finger protein 292 (LOC462870), mRNA
          Length = 8202

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 325  agagcacaaaccattttcaa 344
            ||||||||||||||||||||
Sbjct: 3537 agagcacaaaccattttcaa 3518
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>ref|XM_472789.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1272

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 329 cacaaaccattttcaaaatg 348
           ||||||||||||||||||||
Sbjct: 941 cacaaaccattttcaaaatg 922
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>gb|AC110496.12| Mus musculus chromosome 7, clone RP23-56P3, complete sequence
          Length = 170784

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 124   aacaaattccagactagaacactaatag 151
             |||||||||| ||||||||||| |||||
Sbjct: 65528 aacaaattcctgactagaacaccaatag 65555
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>gb|AC118476.15| Mus musculus chromosome 9, clone RP23-242K3, complete sequence
          Length = 197683

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   accattttcaaaatggtgga 353
             ||||||||||||||||||||
Sbjct: 88042 accattttcaaaatggtgga 88023
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>gb|AC161037.3| Mus musculus chromosome 7, clone RP24-255H18, complete sequence
          Length = 184362

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 124   aacaaattccagactagaacactaatag 151
             |||||||||| ||||||||||| |||||
Sbjct: 13877 aacaaattcctgactagaacaccaatag 13850
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>emb|AL139274.17| Human DNA sequence from clone RP11-393I2 on chromosome 6 Contains a
              reticulocalbin 1, EF-hand calcium binding domain (RCN1)
              pseudogene, a novel gene, a novel pseudogene, the gene for
              a novel zinc finger protein (C2H2 type) and 3 CpG islands,
              complete sequence
          Length = 163481

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    agagcacaaaccattttcaa 344
              ||||||||||||||||||||
Sbjct: 138629 agagcacaaaccattttcaa 138610
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>gb|AC158232.2| Mus musculus BAC clone RP24-200M15 from chromosome 12, complete sequence
          Length = 187225

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    ttaaaccaaatgtttcatag 222
              ||||||||||||||||||||
Sbjct: 143215 ttaaaccaaatgtttcatag 143196
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>gb|AC112651.4| Homo sapiens X BAC RP13-302M16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159274

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 268   tattaaatttgataacagtgtaga 291
             ||||||||||||||| ||||||||
Sbjct: 98787 tattaaatttgataatagtgtaga 98810
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>dbj|AK127835.1| Homo sapiens cDNA FLJ45938 fis, clone PLACE7005169, moderately
            similar to Mus musculus zinc finger protein 292 (Zfp292)
          Length = 4050

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 325  agagcacaaaccattttcaa 344
            ||||||||||||||||||||
Sbjct: 3551 agagcacaaaccattttcaa 3532
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>ref|XM_938563.1| PREDICTED: Homo sapiens zinc finger protein 292, transcript variant 4
            (ZNF292), mRNA
          Length = 10571

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 325  agagcacaaaccattttcaa 344
            ||||||||||||||||||||
Sbjct: 4768 agagcacaaaccattttcaa 4749
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>ref|XM_048070.5| PREDICTED: Homo sapiens zinc finger protein 292, transcript variant 1
            (ZNF292), mRNA
          Length = 10571

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 325  agagcacaaaccattttcaa 344
            ||||||||||||||||||||
Sbjct: 4768 agagcacaaaccattttcaa 4749
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>gb|BC016386.1|BC016386 Homo sapiens, clone IMAGE:4720111, mRNA
          Length = 1892

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 325 agagcacaaaccattttcaa 344
           ||||||||||||||||||||
Sbjct: 675 agagcacaaaccattttcaa 656
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>gb|DQ311345.1| Bombyx mori chromatin modifying protein 1b mRNA, complete cds
          Length = 1634

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 193  aaacctgtggttaaaccaaa 212
            ||||||||||||||||||||
Sbjct: 1318 aaacctgtggttaaaccaaa 1299
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>emb|BX649440.3| Zebrafish DNA sequence from clone CH211-198M12 in linkage group 3,
            complete sequence
          Length = 29954

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   gtgtatccatagtttgtatc 57
            ||||||||||||||||||||
Sbjct: 5522 gtgtatccatagtttgtatc 5541
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>emb|BX470072.8| Zebrafish DNA sequence from clone DKEY-163I6 in linkage group 21,
              complete sequence
          Length = 211164

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 327    agcacaaaccattttcaaaatggt 350
              ||||||||||| ||||||||||||
Sbjct: 121521 agcacaaaccaatttcaaaatggt 121498
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 329      cacaaaccattttcaaaatg 348
                ||||||||||||||||||||
Sbjct: 23249683 cacaaaccattttcaaaatg 23249664
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>emb|BX537746.1|HSM805829 Homo sapiens mRNA; cDNA DKFZp686P0262 (from clone DKFZp686P0262)
          Length = 7037

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 325  agagcacaaaccattttcaa 344
            ||||||||||||||||||||
Sbjct: 4773 agagcacaaaccattttcaa 4754
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>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
             complete sequence
          Length = 121337

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   cacaaaccattttcaaaatg 348
             ||||||||||||||||||||
Sbjct: 87836 cacaaaccattttcaaaatg 87817
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>emb|AL117187.7|CNS01DRD Human chromosome 14 DNA sequence BAC R-725G5 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 195835

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   tccttgacatgaaacctgtg 201
             ||||||||||||||||||||
Sbjct: 34187 tccttgacatgaaacctgtg 34168
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>emb|AL683857.8| Mouse DNA sequence from clone RP23-46O18 on chromosome X, complete
             sequence
          Length = 238677

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   cacaaaccattttcaaaatg 348
             ||||||||||||||||||||
Sbjct: 54225 cacaaaccattttcaaaatg 54206
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>gb|DQ063336.1| Alligator mississippiensis Chompy miniature inverted-repeat
           transposable element, partial sequence
          Length = 466

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 330 acaaaccattttcaaaatggtggaacct 357
           |||||||| ||| |||||||||||||||
Sbjct: 85  acaaaccaatttaaaaatggtggaacct 112
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>emb|AL832366.1|HSM803674 Homo sapiens mRNA; cDNA DKFZp451P076 (from clone DKFZp451P076)
          Length = 4586

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 325  agagcacaaaccattttcaa 344
            ||||||||||||||||||||
Sbjct: 3069 agagcacaaaccattttcaa 3050
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>dbj|AB011102.1| Homo sapiens mRNA for KIAA0530 protein, partial cds
          Length = 6578

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 325  agagcacaaaccattttcaa 344
            ||||||||||||||||||||
Sbjct: 1279 agagcacaaaccattttcaa 1260


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,686,347
Number of Sequences: 3902068
Number of extensions: 3686347
Number of successful extensions: 67061
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66960
Number of HSP's gapped (non-prelim): 101
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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