>SYD_PROMT (Q46I98) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 606

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 80  NKNRLERVHHRYCAKKP 130
           ++NRLE +HH +CA KP
Sbjct: 453 DENRLEAIHHPFCAPKP 469

>NMD2_SCHPO (O13824) Nonsense-mediated mRNA decay protein 2 (Up-frameshift|
           suppressor 2)
          Length = 1049

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 7   KHYYDIQLFL*RYIRE*TKFSLL 75
           KH YD +L + RYI E TKF L+
Sbjct: 533 KHEYDTRLLIVRYISELTKFQLM 555

>NDRG2_XENTR (Q66KM2) Protein NDRG2|
          Length = 360

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 260 LAVNLACGLAYAN*SWFPGLLVIGECSAAYLFT*YRLS 147
           LA  + C L Y N   FP ++ IG  + AY+F  Y LS
Sbjct: 120 LAETIPCVLQYLN---FPSIIGIGVGAGAYIFAKYTLS 154

>NDRG2_XENLA (Q7ZY73) Protein NDRG2|
          Length = 360

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 260 LAVNLACGLAYAN*SWFPGLLVIGECSAAYLFT*YRLS 147
           LA  + C L Y N   FP ++ IG  + AY+F  Y LS
Sbjct: 120 LAETIPCVLQYLN---FPSIIGIGVGAGAYIFAKYTLS 154

>PURA1_METAC (Q8TPJ2) Adenylosuccinate synthetase 1 (EC 6.3.4.4) (IMP--aspartate|
           ligase 1) (AdSS 1) (AMPSase 1)
          Length = 424

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -2

Query: 155 RLSWHEMPVVFWHSTYGGLSLVYFC*LSKLNFVYSL----MYRYRNSCIS 18
           RL W ++PV+ +  T  G   +  C L K++ +  +     YRY++  +S
Sbjct: 307 RLGWLDIPVLRYAHTINGFDTLAICKLDKMDSLPEIKICTSYRYQDQILS 356

>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7073

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 370  KEIDYSVQS*SRGSELAVNLGCKEIGHSV 284
            K +D+SV+    G EL VN  C+++ H V
Sbjct: 6190 KRVDWSVEYPIIGDELRVNSACRKVQHMV 6218

>COAE_PROMP (Q7V3M6) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A|
           kinase)
          Length = 204

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 322 QVLNLLINFEQSSLFLSLYLDNS 390
           +++NL +NFE  S F  + LDNS
Sbjct: 168 KIINLQLNFEDKSKFADVILDNS 190

>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7071

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 370  KEIDYSVQS*SRGSELAVNLGCKEIGHSV 284
            K +D+SV+    G EL +N  C+++ H V
Sbjct: 6188 KRVDWSVEYPIIGDELKINSACRKVQHMV 6216

>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting|
           gene 1) (Rig-1)
          Length = 1366

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 265 QTLQLIWHVD*PMQIDLGFQGFW*SASVVQ 176
           +TLQ+ W VD P+Q+  GF+  W  A + Q
Sbjct: 684 RTLQVSWTVDGPVQLVQGFRVSWRIAGLDQ 713

>DHSA_RICCN (Q92J97) Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)|
          Length = 596

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
 Frame = +2

Query: 14  TMIYNCFCNGTSGNRQNSVYLINKNRLERVHHRYC------AKKPRASHASSVGI----- 160
           T IY+  C  T G R    YL+N N  ER   RY       A +   S A ++ I     
Sbjct: 248 TGIYSAGCLITEGARGEGGYLVNANG-ERFMERYAPAAKDLASRDVVSRAMTIEIREGRG 306

Query: 161 ----K*TNMLHYTRRSPEALETKI 220
               K    LH    SPE L +++
Sbjct: 307 VGEHKDHVFLHLNHLSPEILHSRL 330


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,869,553
Number of Sequences: 219361
Number of extensions: 986025
Number of successful extensions: 1827
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1827
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)