ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02g01 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | RS30_ARATH (P49689) 40S ribosomal protein S30 | 124 | 1e-28 | 2 | RS30_RAT (P62864) 40S ribosomal protein S30 | 94 | 2e-19 | 3 | RS30_PIG (P62863) 40S ribosomal protein S30 | 94 | 2e-19 | 4 | RS30_MUSSI (P62867) 40S ribosomal protein S30 | 94 | 2e-19 | 5 | RS30_MOUSE (P62862) 40S ribosomal protein S30 | 94 | 2e-19 | 6 | RS30_HUMAN (P62861) 40S ribosomal protein S30 | 94 | 2e-19 | 7 | RS30_CRIGR (P62860) 40S ribosomal protein S30 | 94 | 2e-19 | 8 | RS30_BOVIN (P62866) 40S ribosomal protein S30 | 94 | 2e-19 | 9 | RS30_ORYLA (Q9W6Y0) 40S ribosomal protein S30 | 82 | 4e-16 | 10 | RS30_SCHPO (O42952) 40S ribosomal protein S30 | 80 | 3e-15 | 11 | RS30_PLAF7 (O96269) 40S ribosomal protein S30 | 75 | 5e-14 | 12 | RS30_YEAST (Q12087) 40S ribosomal protein S30 | 73 | 2e-13 | 13 | RS30_AERPE (Q9Y9T9) 30S ribosomal protein S30 | 38 | 0.008 | 14 | YB71_SCHPO (O14318) Hypothetical protein C16E9.01c in chromosome II | 30 | 1.8 | 15 | BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH) | 28 | 6.7 | 16 | SYH_METTH (O26346) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... | 28 | 6.7 |
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>RS30_ARATH (P49689) 40S ribosomal protein S30| Length = 62 Score = 124 bits (310), Expect = 1e-28 Identities = 59/62 (95%), Positives = 62/62 (100%) Frame = -1 Query: 346 MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 167 MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60 Query: 166 EK 161 EK Sbjct: 61 EK 62
>RS30_RAT (P62864) 40S ribosomal protein S30| Length = 59 Score = 93.6 bits (231), Expect = 2e-19 Identities = 44/58 (75%), Positives = 51/58 (87%) Frame = -1 Query: 340 KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 167 KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +R+QYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
>RS30_PIG (P62863) 40S ribosomal protein S30| Length = 59 Score = 93.6 bits (231), Expect = 2e-19 Identities = 44/58 (75%), Positives = 51/58 (87%) Frame = -1 Query: 340 KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 167 KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +R+QYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
>RS30_MUSSI (P62867) 40S ribosomal protein S30| Length = 59 Score = 93.6 bits (231), Expect = 2e-19 Identities = 44/58 (75%), Positives = 51/58 (87%) Frame = -1 Query: 340 KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 167 KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +R+QYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
>RS30_MOUSE (P62862) 40S ribosomal protein S30| Length = 59 Score = 93.6 bits (231), Expect = 2e-19 Identities = 44/58 (75%), Positives = 51/58 (87%) Frame = -1 Query: 340 KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 167 KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +R+QYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
>RS30_HUMAN (P62861) 40S ribosomal protein S30| Length = 59 Score = 93.6 bits (231), Expect = 2e-19 Identities = 44/58 (75%), Positives = 51/58 (87%) Frame = -1 Query: 340 KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 167 KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +R+QYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
>RS30_CRIGR (P62860) 40S ribosomal protein S30| Length = 59 Score = 93.6 bits (231), Expect = 2e-19 Identities = 44/58 (75%), Positives = 51/58 (87%) Frame = -1 Query: 340 KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 167 KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +R+QYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
>RS30_BOVIN (P62866) 40S ribosomal protein S30| Length = 59 Score = 93.6 bits (231), Expect = 2e-19 Identities = 44/58 (75%), Positives = 51/58 (87%) Frame = -1 Query: 340 KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 167 KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +R+QYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
>RS30_ORYLA (Q9W6Y0) 40S ribosomal protein S30| Length = 59 Score = 82.4 bits (202), Expect = 4e-16 Identities = 39/58 (67%), Positives = 47/58 (81%) Frame = -1 Query: 340 KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 167 KVHGSLARAGKVRGQTP V K ++K++ GRA +RIQYNRRFV V FGKK+G N++ Sbjct: 1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANAN 58
>RS30_SCHPO (O42952) 40S ribosomal protein S30| Length = 61 Score = 79.7 bits (195), Expect = 3e-15 Identities = 40/60 (66%), Positives = 45/60 (75%) Frame = -1 Query: 346 MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSS 167 MGKVHGSLARAGKV+ QTPKV KQ+K KQP+GRA+KR+ Y RRFV G KR N S Sbjct: 1 MGKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPS 60
>RS30_PLAF7 (O96269) 40S ribosomal protein S30| Length = 58 Score = 75.5 bits (184), Expect = 5e-14 Identities = 40/59 (67%), Positives = 44/59 (74%) Frame = -1 Query: 346 MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNS 170 MGKVHGSLARAGKV+ QTPKV K DKKK+ GRA KR YNRRF G+K+GPNS Sbjct: 1 MGKVHGSLARAGKVKNQTPKVPKLDKKKRLTGRAKKRQLYNRRFSD---NGGRKKGPNS 56
>RS30_YEAST (Q12087) 40S ribosomal protein S30| Length = 62 Score = 73.2 bits (178), Expect = 2e-13 Identities = 34/53 (64%), Positives = 42/53 (79%) Frame = -1 Query: 340 KVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKR 182 KVHGSLARAGKV+ QTPKV K +K K+P+GRA+KR+ Y RRFV + GK+R Sbjct: 2 KVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKRR 54
>RS30_AERPE (Q9Y9T9) 30S ribosomal protein S30| Length = 50 Score = 38.1 bits (87), Expect = 0.008 Identities = 19/39 (48%), Positives = 25/39 (64%) Frame = -1 Query: 334 HGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRR 218 HGSL +AGKVR QTP++ + KK P R R++Y R Sbjct: 4 HGSLTKAGKVRKQTPRLPAKQKKNYP-PRLKNRLKYQVR 41
>YB71_SCHPO (O14318) Hypothetical protein C16E9.01c in chromosome II| Length = 295 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/35 (37%), Positives = 24/35 (68%) Frame = -2 Query: 411 AARAPSVHLADRSAAAPPPQQPWVRCTDRWRVPGR 307 ++++PS + S+A+P PQ+P +R + +W VP R Sbjct: 3 SSKSPS-EVEKSSSASPAPQKPMIRVSKQWVVPPR 36
>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 550 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = -2 Query: 423 PDAAAARAPSVHLADRSAAAPPPQQPWVRCTDRWRVPGR 307 P S H+ R+ AP Q+PW+ RW+V R Sbjct: 514 PSIMTGEKASDHILGRTPLAPSNQEPWI--NPRWQVSDR 550
>SYH_METTH (O26346) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 425 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +3 Query: 120 TKKEG*RETGWIYYFSDELGPRFLPKPTTAVTKRRLYWMRLWARPRGC---FFLSCF 281 T K G IY+F+D+ G +P RLY + +P+ +F SCF Sbjct: 51 TVKSGEEVVNQIYHFTDKGGRELALRPELTAPVARLYMNEMQKKPKPIKMYYFGSCF 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.128 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,621,517 Number of Sequences: 219361 Number of extensions: 766339 Number of successful extensions: 2424 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2361 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2418 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
