ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl02f12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468232.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2701 Score = 131 bits (66), Expect = 2e-27 Identities = 147/174 (84%) Strand = Plus / Minus Query: 252 gtttgcgagcagcttactggctgtgccaaatataggggctatatcaacgggcacctgcat 311 |||||| ||||||||| | |||||||| |||||||| | |||||||| ||||||||||| Sbjct: 2389 gtttgcaagcagcttatttgctgtgccgaatataggagtgatatcaacaggcacctgcat 2330 Query: 312 atgttcgattttctccaatgccacgcgcaacggctgtgtcaaggttgcacgggactgaag 371 ||||| ||||| |||| ||||| |||| || || |||||| ||||| ||||||| || Sbjct: 2329 gtgttctattttgtccagcgccacacgcagtggttgcgtcaagcttgcatgggactgcag 2270 Query: 372 gagagactgcgcagcaggcttgtcgccctttgcctgtatcgtcatgatctctct 425 |||||||| ||||||||||| ||||||||||| ||||| |||| ||||||||| Sbjct: 2269 aagagactgggcagcaggcttatcgccctttgcttgtattgtcaggatctctct 2216
>dbj|AK072317.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026G15, full insert sequence Length = 2701 Score = 131 bits (66), Expect = 2e-27 Identities = 147/174 (84%) Strand = Plus / Minus Query: 252 gtttgcgagcagcttactggctgtgccaaatataggggctatatcaacgggcacctgcat 311 |||||| ||||||||| | |||||||| |||||||| | |||||||| ||||||||||| Sbjct: 2389 gtttgcaagcagcttatttgctgtgccgaatataggagtgatatcaacaggcacctgcat 2330 Query: 312 atgttcgattttctccaatgccacgcgcaacggctgtgtcaaggttgcacgggactgaag 371 ||||| ||||| |||| ||||| |||| || || |||||| ||||| ||||||| || Sbjct: 2329 gtgttctattttgtccagcgccacacgcagtggttgcgtcaagcttgcatgggactgcag 2270 Query: 372 gagagactgcgcagcaggcttgtcgccctttgcctgtatcgtcatgatctctct 425 |||||||| ||||||||||| ||||||||||| ||||| |||| ||||||||| Sbjct: 2269 aagagactgggcagcaggcttatcgccctttgcttgtattgtcaggatctctct 2216
>gb|AY105129.1| Zea mays PCO064576 mRNA sequence Length = 1495 Score = 103 bits (52), Expect = 5e-19 Identities = 136/164 (82%) Strand = Plus / Minus Query: 286 ggggctatatcaacgggcacctgcatatgttcgattttctccaatgccacgcgcaacggc 345 |||||||| ||||| || |||||||| || || || |||||||||||| | ||| || Sbjct: 962 ggggctatgtcaacaggtacctgcatgtgctctatcctctccaatgccattctcaatggt 903 Query: 346 tgtgtcaaggttgcacgggactgaaggagagactgcgcagcaggcttgtcgccctttgcc 405 |||||||| |||||||||||||| || ||||| || |||| |||||| |||||||||||| Sbjct: 902 tgtgtcaatgttgcacgggactggagaagagattgggcagaaggcttatcgccctttgcc 843 Query: 406 tgtatcgtcatgatctctctgccaaggctttccacagcttcctc 449 ||||| |||| ||||| |||| |||||||| ||||| ||||| Sbjct: 842 tgtattgtcagtatctccctgctcaggctttctacagcatcctc 799
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 91.7 bits (46), Expect = 2e-15 Identities = 103/122 (84%) Strand = Plus / Minus Query: 304 acctgcatatgttcgattttctccaatgccacgcgcaacggctgtgtcaaggttgcacgg 363 |||||||| ||||| ||||| |||| ||||| |||| || || |||||| ||||| || Sbjct: 33737490 acctgcatgtgttctattttgtccagcgccacacgcagtggttgcgtcaagcttgcatgg 33737431 Query: 364 gactgaaggagagactgcgcagcaggcttgtcgccctttgcctgtatcgtcatgatctct 423 ||||| || |||||||| ||||||||||| ||||||||||| ||||| |||| ||||||| Sbjct: 33737430 gactgcagaagagactgggcagcaggcttatcgccctttgcttgtattgtcaggatctct 33737371 Query: 424 ct 425 || Sbjct: 33737370 ct 33737369
>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1249_F12 Length = 133205 Score = 91.7 bits (46), Expect = 2e-15 Identities = 103/122 (84%) Strand = Plus / Minus Query: 304 acctgcatatgttcgattttctccaatgccacgcgcaacggctgtgtcaaggttgcacgg 363 |||||||| ||||| ||||| |||| ||||| |||| || || |||||| ||||| || Sbjct: 105897 acctgcatgtgttctattttgtccagcgccacacgcagtggttgcgtcaagcttgcatgg 105838 Query: 364 gactgaaggagagactgcgcagcaggcttgtcgccctttgcctgtatcgtcatgatctct 423 ||||| || |||||||| ||||||||||| ||||||||||| ||||| |||| ||||||| Sbjct: 105837 gactgcagaagagactgggcagcaggcttatcgccctttgcttgtattgtcaggatctct 105778 Query: 424 ct 425 || Sbjct: 105777 ct 105776
>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0700F06 Length = 139277 Score = 91.7 bits (46), Expect = 2e-15 Identities = 103/122 (84%) Strand = Plus / Minus Query: 304 acctgcatatgttcgattttctccaatgccacgcgcaacggctgtgtcaaggttgcacgg 363 |||||||| ||||| ||||| |||| ||||| |||| || || |||||| ||||| || Sbjct: 68357 acctgcatgtgttctattttgtccagcgccacacgcagtggttgcgtcaagcttgcatgg 68298 Query: 364 gactgaaggagagactgcgcagcaggcttgtcgccctttgcctgtatcgtcatgatctct 423 ||||| || |||||||| ||||||||||| ||||||||||| ||||| |||| ||||||| Sbjct: 68297 gactgcagaagagactgggcagcaggcttatcgccctttgcttgtattgtcaggatctct 68238 Query: 424 ct 425 || Sbjct: 68237 ct 68236
>gb|AC124850.2| Homo sapiens chromosome 5 clone CTD-2166H5, complete sequence Length = 120112 Score = 46.1 bits (23), Expect = 0.098 Identities = 26/27 (96%) Strand = Plus / Plus Query: 93 ttcatttatttgtgttattttccattt 119 ||||||||||||||||| ||||||||| Sbjct: 118894 ttcatttatttgtgttaatttccattt 118920
>gb|AC129064.1| Homo sapiens chromosome 5 clone CTC-227K1, complete sequence Length = 24517 Score = 46.1 bits (23), Expect = 0.098 Identities = 26/27 (96%) Strand = Plus / Minus Query: 93 ttcatttatttgtgttattttccattt 119 ||||||||||||||||| ||||||||| Sbjct: 10618 ttcatttatttgtgttaatttccattt 10592
>gb|AC138411.1| Homo sapiens chromosome 5 clone RP11-864N22, complete sequence Length = 170816 Score = 46.1 bits (23), Expect = 0.098 Identities = 26/27 (96%) Strand = Plus / Minus Query: 93 ttcatttatttgtgttattttccattt 119 ||||||||||||||||| ||||||||| Sbjct: 35531 ttcatttatttgtgttaatttccattt 35505
>gb|AC009079.4|AC009079 Homo sapiens chromosome 16 clone RP11-340B7, complete sequence Length = 199851 Score = 46.1 bits (23), Expect = 0.098 Identities = 26/27 (96%) Strand = Plus / Minus Query: 93 ttcatttatttgtgttattttccattt 119 |||||||||||||||||||||| |||| Sbjct: 86657 ttcatttatttgtgttattttcaattt 86631
>gb|AC166108.4| Mus musculus BAC clone RP23-192E10 from chromosome 1, complete sequence Length = 188836 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 ctttctcatataaaaatacagg 184 |||||||||||||||||||||| Sbjct: 62938 ctttctcatataaaaatacagg 62917
>gb|AC125006.9| Mus musculus chromosome 3, clone RP24-157K20, complete sequence Length = 169078 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 66 tgctaacaccatccttttaaaa 87 |||||||||||||||||||||| Sbjct: 75135 tgctaacaccatccttttaaaa 75114
>gb|AC101813.5| Mus musculus chromosome 1, clone RP24-315D8, complete sequence Length = 159286 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 ctttctcatataaaaatacagg 184 |||||||||||||||||||||| Sbjct: 71651 ctttctcatataaaaatacagg 71630
>emb|CR854992.5| Zebrafish DNA sequence from clone DKEYP-30C3 in linkage group 5, complete sequence Length = 104348 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 81 tttaaaaggtcattcatttatttgtgttat 110 |||||||||||||||| |||||||| |||| Sbjct: 56201 tttaaaaggtcattcaattatttgtattat 56172
>emb|CR391942.8| Zebrafish DNA sequence from clone DKEY-191H21 in linkage group 5, complete sequence Length = 25485 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 81 tttaaaaggtcattcatttatttgtgttat 110 |||||||||||||||| |||||||| |||| Sbjct: 3680 tttaaaaggtcattcaattatttgtattat 3651
>gb|AE006823.1| Sulfolobus solfataricus P2 section 182 of 272 of the complete genome Length = 10984 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 tatttgtgttattttccattt 119 ||||||||||||||||||||| Sbjct: 9658 tatttgtgttattttccattt 9678
>emb|BX548038.9| Zebrafish DNA sequence from clone DKEY-219C10 in linkage group 9, complete sequence Length = 173526 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 90 tcattcatttatttgtgttattttc 114 |||||||||||||||| |||||||| Sbjct: 130824 tcattcatttatttgttttattttc 130848
>gb|AC020641.8| Homo sapiens chromosome 10 clone RP11-222A11, complete sequence Length = 166098 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 atttatttgtgttattttcca 116 ||||||||||||||||||||| Sbjct: 23762 atttatttgtgttattttcca 23782
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 92 attcatttatttgtgttattttccatttg 120 |||||||||||||| | |||||||||||| Sbjct: 2201932 attcatttatttgtttgattttccatttg 2201904
>gb|AC090771.4| Homo sapiens chromosome 18, clone RP11-795H16, complete sequence Length = 186031 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 79 cttttaaaaggtcattcatttattt 103 |||||||||||||||| |||||||| Sbjct: 39801 cttttaaaaggtcatttatttattt 39777
>gb|AC093608.3| Homo sapiens BAC clone RP11-700C8 from 4, complete sequence Length = 162015 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 90 tcattcatttatttgtgttattttc 114 ||||| ||||||||||||||||||| Sbjct: 26161 tcatttatttatttgtgttattttc 26185
>gb|AC013402.9| Homo sapiens BAC clone RP11-134N15 from 2, complete sequence Length = 177882 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 ggtcattcatttatttgtgtt 108 ||||||||||||||||||||| Sbjct: 117804 ggtcattcatttatttgtgtt 117824
>gb|AC097355.15| Mus musculus strain C57BL/6J chromosome 2 clone rp23-304j8, complete sequence Length = 163774 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 155 aatttctactttctcatataaaaat 179 |||||||| |||||||||||||||| Sbjct: 97831 aatttctattttctcatataaaaat 97807
>emb|CT010565.14| Mouse DNA sequence from clone RP23-263E11 on chromosome 16, complete sequence Length = 200242 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 95 catttatttgtgttattttccattt 119 ||||| ||||||||||||||||||| Sbjct: 128634 catttctttgtgttattttccattt 128610
>emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chromosome 2, complete sequence Length = 221534 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 155 aatttctactttctcatataaaaat 179 |||||||| |||||||||||||||| Sbjct: 183371 aatttctattttctcatataaaaat 183347
>gb|AC121842.3| Mus musculus BAC clone RP24-80L24 from chromosome 3, complete sequence Length = 173273 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 tttatttgtgttattttccatttg 120 ||||||||| |||||||||||||| Sbjct: 103402 tttatttgtattattttccatttg 103425
>gb|AC090042.2| Homo sapiens chromosome 3 clone RP11-21B12 map 3p, complete sequence Length = 167559 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 tttatttgtgttattttccatttg 120 ||||||||| |||||||||||||| Sbjct: 49294 tttatttgttttattttccatttg 49271
>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence Length = 147107 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 tactttctcatataaaaatacagg 184 |||||||||||| ||||||||||| Sbjct: 33029 tactttctcataaaaaaatacagg 33006
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 408 tatcgtcatgatctctctgccaag 431 ||||||||| |||||||||||||| Sbjct: 3976233 tatcgtcatcatctctctgccaag 3976256
>gb|AC139728.3| Carollia perspicillata clone 29G20, complete sequence Length = 125364 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 atttgtgttattttccattt 119 |||||||||||||||||||| Sbjct: 15923 atttgtgttattttccattt 15942
>emb|AL356575.8| Human DNA sequence from clone RP11-340C20 on chromosome 13 Contains part of the PCCA gene for propionyl Coenzyme A carboxylase alpha polypeptide, and a ribosomal protein L15 (RPL15) pseudogene, complete sequence Length = 158527 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tcattcatttatttgtgtta 109 |||||||||||||||||||| Sbjct: 23998 tcattcatttatttgtgtta 23979
>emb|AL162574.14| Human DNA sequence from clone RP11-282A11 on chromosome 13 Contains a novel gene similar to peptidylprolyl isomerase A (cyclophilin A) (PPIA) (CYPA CYPH) and a CpG island, complete sequence Length = 184738 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ttcatttatttgtgttattt 112 |||||||||||||||||||| Sbjct: 155960 ttcatttatttgtgttattt 155979
>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence Length = 142102 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 tactttctcatataaaaatacagg 184 |||||||||||| ||||||||||| Sbjct: 123786 tactttctcataaaaaaatacagg 123763
>emb|BX537135.9| Zebrafish DNA sequence from clone DKEY-57B1 in linkage group 14, complete sequence Length = 108341 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 catttatttgtgttattttc 114 |||||||||||||||||||| Sbjct: 73416 catttatttgtgttattttc 73397
>gb|AC115100.3| Homo sapiens chromosome 18, clone RP11-237L15, complete sequence Length = 169152 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 tcattcatttatttgtgttatttt 113 ||||| |||||||||||||||||| Sbjct: 124585 tcatttatttatttgtgttatttt 124562
>gb|AC091317.3| Homo sapiens chromosome 18, clone CTD-2338I4, complete sequence Length = 105168 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 tcattcatttatttgtgttatttt 113 ||||| |||||||||||||||||| Sbjct: 77320 tcatttatttatttgtgttatttt 77343
>gb|AC114603.15| Mus musculus chromosome 1, clone RP23-355E19, complete sequence Length = 260698 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 aggctttccacagcttcctc 449 |||||||||||||||||||| Sbjct: 210083 aggctttccacagcttcctc 210064
>gb|AC016909.9| Homo sapiens BAC clone RP11-458A7 from 2, complete sequence Length = 155535 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 tcattcatttatttgtgttatttt 113 ||||| |||||||||||||||||| Sbjct: 78808 tcattgatttatttgtgttatttt 78785
>emb|BX842670.5| Zebrafish DNA sequence from clone DKEY-195A13 in linkage group 20, complete sequence Length = 177539 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 atttgtgttattttccattt 119 |||||||||||||||||||| Sbjct: 51310 atttgtgttattttccattt 51291
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold Length = 1501503 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 atttgtgttattttccattt 119 |||||||||||||||||||| Sbjct: 569265 atttgtgttattttccattt 569284 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,541,938 Number of Sequences: 3902068 Number of extensions: 4541938 Number of successful extensions: 99221 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99079 Number of HSP's gapped (non-prelim): 142 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
