ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02f09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016690.1| Zea mays clone Contig523 mRNA sequence Length = 1207 Score = 119 bits (60), Expect = 7e-24 Identities = 200/246 (81%), Gaps = 3/246 (1%) Strand = Plus / Minus Query: 146 tggttcagatgatagttccagcctctcagaatgaccctgggcttggatccttcgggtgcc 205 |||| |||||||| |||||||||||| || | || ||||| |||| || | ||| ||| Sbjct: 1049 tggtccagatgatggttccagcctctgaggacaactctgggactggacccctggggagcc 990 Query: 206 tcgaaggagatgtcagttgtcatcttctccccgggggtgagcgaaaaatagttgtctgag 265 ||||| |||||||| | ||| |||||||| || || |||||||| |||||||| ||| Sbjct: 989 tcgaacgagatgtcgacggccatgttctcccccggcgtcagcgaaaagtagttgtccgag 930 Query: 266 tagtgtaccggaaggattctagtgtccctgtaattctccccaa---tggatgattcagag 322 ||||| ||||| |||||||| ||||| |||| | |||||| |||||||||| ||| Sbjct: 929 tagtggaccgggaggattcttgtgtcattgtattcctccccgtccgtggatgattcggag 870 Query: 323 gtgtgcactgagaaatgaaggaaaaacgctacacctgaatcggtcccgttaacctcaagt 382 ||||||||||||||||| ||||| || || || ||||||||||||||| | ||||| ||| Sbjct: 869 gtgtgcactgagaaatggaggaagaaggcaacccctgaatcggtcccgctgacctccagt 810 Query: 383 gttctt 388 |||||| Sbjct: 809 gttctt 804
>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01, complete sequence Length = 164709 Score = 117 bits (59), Expect = 3e-23 Identities = 202/249 (81%), Gaps = 3/249 (1%) Strand = Plus / Minus Query: 143 gcatggttcagatgatagttccagcctctcagaatgaccctgggcttggatccttcgggt 202 ||||||| ||| ||||||||||||||| |||||||||||||||| ||||||| | ||| Sbjct: 42054 gcatggtccaggtgatagttccagcctttcagaatgaccctgggggtggatccctggggg 41995 Query: 203 gcctcgaaggagatgtcagttgtcatcttctccccgggggtgagcgaaaaatagttgtct 262 |||||||| |||||||| | | |||||||||||| || ||| || || |||||||| Sbjct: 41994 gcctcgaacgagatgtcgatggccatcttctcccccggtacgagggagaagtagttgtcg 41935 Query: 263 gagtagtgtaccggaaggattctagtgtccctgtaattctccccaatggatgat---tca 319 |||||||| || || |||||||| |||||| ||||| ||| | |||||||| ||| Sbjct: 41934 gagtagtggacagggaggattcttgtgtccttgtaaacatcctgactggatgatggctca 41875 Query: 320 gaggtgtgcactgagaaatgaaggaaaaacgctacacctgaatcggtcccgttaacctca 379 || ||||| || |||||||| |||||||||| || |||||||||| ||| || ||||| Sbjct: 41874 gatgtgtgtaccgagaaatggaggaaaaacgagacgcctgaatcggcccctttcacctcc 41815 Query: 380 agtgttctt 388 | ||||||| Sbjct: 41814 actgttctt 41806
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 117 bits (59), Expect = 3e-23 Identities = 202/249 (81%), Gaps = 3/249 (1%) Strand = Plus / Minus Query: 143 gcatggttcagatgatagttccagcctctcagaatgaccctgggcttggatccttcgggt 202 ||||||| ||| ||||||||||||||| |||||||||||||||| ||||||| | ||| Sbjct: 18874676 gcatggtccaggtgatagttccagcctttcagaatgaccctgggggtggatccctggggg 18874617 Query: 203 gcctcgaaggagatgtcagttgtcatcttctccccgggggtgagcgaaaaatagttgtct 262 |||||||| |||||||| | | |||||||||||| || ||| || || |||||||| Sbjct: 18874616 gcctcgaacgagatgtcgatggccatcttctcccccggtacgagggagaagtagttgtcg 18874557 Query: 263 gagtagtgtaccggaaggattctagtgtccctgtaattctccccaatggatgat---tca 319 |||||||| || || |||||||| |||||| ||||| ||| | |||||||| ||| Sbjct: 18874556 gagtagtggacagggaggattcttgtgtccttgtaaacatcctgactggatgatggctca 18874497 Query: 320 gaggtgtgcactgagaaatgaaggaaaaacgctacacctgaatcggtcccgttaacctca 379 || ||||| || |||||||| |||||||||| || |||||||||| ||| || ||||| Sbjct: 18874496 gatgtgtgtaccgagaaatggaggaaaaacgagacgcctgaatcggcccctttcacctcc 18874437 Query: 380 agtgttctt 388 | ||||||| Sbjct: 18874436 actgttctt 18874428
>dbj|AK119412.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F10, full insert sequence Length = 3621 Score = 117 bits (59), Expect = 3e-23 Identities = 202/249 (81%), Gaps = 3/249 (1%) Strand = Plus / Minus Query: 143 gcatggttcagatgatagttccagcctctcagaatgaccctgggcttggatccttcgggt 202 ||||||| ||| ||||||||||||||| |||||||||||||||| ||||||| | ||| Sbjct: 3072 gcatggtccaggtgatagttccagcctttcagaatgaccctgggggtggatccctggggg 3013 Query: 203 gcctcgaaggagatgtcagttgtcatcttctccccgggggtgagcgaaaaatagttgtct 262 |||||||| |||||||| | | |||||||||||| || ||| || || |||||||| Sbjct: 3012 gcctcgaacgagatgtcgatggccatcttctcccccggtacgagggagaagtagttgtcg 2953 Query: 263 gagtagtgtaccggaaggattctagtgtccctgtaattctccccaatggatgat---tca 319 |||||||| || || |||||||| |||||| ||||| ||| | |||||||| ||| Sbjct: 2952 gagtagtggacagggaggattcttgtgtccttgtaaacatcctgactggatgatggctca 2893 Query: 320 gaggtgtgcactgagaaatgaaggaaaaacgctacacctgaatcggtcccgttaacctca 379 || ||||| || |||||||| |||||||||| || |||||||||| ||| || ||||| Sbjct: 2892 gatgtgtgtaccgagaaatggaggaaaaacgagacgcctgaatcggcccctttcacctcc 2833 Query: 380 agtgttctt 388 | ||||||| Sbjct: 2832 actgttctt 2824
>ref|NM_100771.2| Arabidopsis thaliana ANP1 (NPK1-RELATED PROTEIN KINASE 1S); kinase AT1G09000 (ANP1) mRNA, complete cds Length = 2862 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Plus Query: 251 aaatagttgtctgagtagtgtac 273 ||||||||||||||||||||||| Sbjct: 2474 aaatagttgtctgagtagtgtac 2496
>ref|NM_100772.3| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds AT1G09010 mRNA, complete cds Length = 3023 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Minus Query: 251 aaatagttgtctgagtagtgtac 273 ||||||||||||||||||||||| Sbjct: 2803 aaatagttgtctgagtagtgtac 2781
>gb|AY045934.1| Arabidopsis thaliana At1g09010 mRNA sequence Length = 3297 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Minus Query: 251 aaatagttgtctgagtagtgtac 273 ||||||||||||||||||||||| Sbjct: 3072 aaatagttgtctgagtagtgtac 3050
>dbj|AB122060.1| Arabidopsis thaliana AtEBM mRNA for endo-beta-mannosidase, complete cds Length = 2835 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Minus Query: 251 aaatagttgtctgagtagtgtac 273 ||||||||||||||||||||||| Sbjct: 2708 aaatagttgtctgagtagtgtac 2686
>gb|AC000106.1|F7G19 Sequence of BAC F7G19 from Arabidopsis thaliana chromosome 1, complete sequence Length = 110514 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Minus Query: 251 aaatagttgtctgagtagtgtac 273 ||||||||||||||||||||||| Sbjct: 47801 aaatagttgtctgagtagtgtac 47779
>emb|CR854849.7| Human DNA sequence from clone RP13-79M23 on chromosome 1, complete sequence Length = 153012 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 tcagaatgaccctgggcttgg 191 ||||||||||||||||||||| Sbjct: 6115 tcagaatgaccctgggcttgg 6095
>emb|AL603749.6| Human DNA sequence from clone RP11-133N1 on chromosome 1 Contains two novel proteins similar to preferentially expressed antigen in melanoma (PRAME) and the 3' end of a novel leucine rich repeat domain containing protein, complete sequence Length = 102313 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 tcagaatgaccctgggcttgg 191 ||||||||||||||||||||| Sbjct: 37412 tcagaatgaccctgggcttgg 37432
>emb|AL365443.16| Human DNA sequence from clone RP11-219C24 on chromosome 1 Contains six novel genes similar to preferentially expressed antigen in melanoma (PRAME), two novel genes, two preferentially expressed antigen in melanoma (PRAME) pseudogenes and a CpG island, complete sequence Length = 184591 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 tcagaatgaccctgggcttgg 191 ||||||||||||||||||||| Sbjct: 30970 tcagaatgaccctgggcttgg 30950
>ref|NG_005161.1| Homo sapiens preferentially expressed antigen in melanoma (PRAME), pseudogene (LOC391001) on chromosome 1 Length = 5181 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 tcagaatgaccctgggcttgg 191 ||||||||||||||||||||| Sbjct: 4331 tcagaatgaccctgggcttgg 4351
>gb|AC026179.5|AC026179 Homo sapiens chromosome 3 clone RP11-264H3 map 3p, complete sequence Length = 166488 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 atgtacttactttacatggat 98 ||||||||||||||||||||| Sbjct: 152625 atgtacttactttacatggat 152605
>gb|AC066584.6|AC066584 Homo sapiens chromosome 3 clone RP11-244G3 map 3p, complete sequence Length = 155825 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 atgtacttactttacatggat 98 ||||||||||||||||||||| Sbjct: 76775 atgtacttactttacatggat 76755
>gb|AC018493.6|AC018493 Homo sapiens chromosome 3 clone RP11-163M22 map 3p, complete sequence Length = 180299 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 atgtacttactttacatggat 98 ||||||||||||||||||||| Sbjct: 171146 atgtacttactttacatggat 171166
>gb|AC011327.17|AC011327 Homo sapiens 3 BAC RP11-77I5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168812 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 atgtacttactttacatggat 98 ||||||||||||||||||||| Sbjct: 159653 atgtacttactttacatggat 159673
>emb|AL935264.12| Mouse DNA sequence from clone RP23-118A9 on chromosome 4, complete sequence Length = 230886 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 ctgcactttattggggatgta 82 ||||||||||||||||||||| Sbjct: 26959 ctgcactttattggggatgta 26939
>gb|AC023485.6| Homo sapiens chromosome 3 clone RP11-489D19 map 3p, complete sequence Length = 179304 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 atgtacttactttacatggat 98 ||||||||||||||||||||| Sbjct: 100248 atgtacttactttacatggat 100228
>gb|AC153508.2| Mus musculus 10 BAC RP23-233B6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190780 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 agttccagcctctcagaatg 178 |||||||||||||||||||| Sbjct: 140703 agttccagcctctcagaatg 140722
>ref|NM_001017061.2| Xenopus tropicalis hypothetical protein LOC549815 (LOC549815), mRNA Length = 1786 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tccagcctctcagaatgacc 181 |||||||||||||||||||| Sbjct: 332 tccagcctctcagaatgacc 351
>gb|AY633104.1| Cicurina pallida haplotype TX365 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 984 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tactttacatggatcttatt 104 |||||||||||||||||||| Sbjct: 678 tactttacatggatcttatt 697
>gb|AY633103.1| Cicurina pallida haplotype TX363 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 966 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tactttacatggatcttatt 104 |||||||||||||||||||| Sbjct: 660 tactttacatggatcttatt 679
>gb|AC135239.3| Mus musculus BAC clone RP23-324D2 from chromosome 3, complete sequence Length = 190178 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 gcactttattggggatgtacttac 87 |||||| ||||||||||||||||| Sbjct: 91501 gcacttaattggggatgtacttac 91524
>gb|AC110566.17| Mus musculus chromosome 5, clone RP23-300A10, complete sequence Length = 175471 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 aggagatgtcagttgtcatc 229 |||||||||||||||||||| Sbjct: 68168 aggagatgtcagttgtcatc 68149
>emb|AL353744.18| Human DNA sequence from clone RP13-100A9 on chromosome Xq11.2-13.1 Contains a GrpE-like 2 mitochondrial (E. coli) pseudogene and a novel pseudogene, complete sequence Length = 131070 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 atgtcagttgtcatcttctc 234 |||||||||||||||||||| Sbjct: 45557 atgtcagttgtcatcttctc 45538
>emb|AL353808.14| Human DNA sequence from clone RP11-152M16 on chromosome 9, complete sequence Length = 44262 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 ctgagaaatgaaggaaaaac 349 |||||||||||||||||||| Sbjct: 24027 ctgagaaatgaaggaaaaac 24046
>gb|AC163212.3| Mus musculus chromosome 3, clone RP24-102O2, complete sequence Length = 199319 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 gcactttattggggatgtacttac 87 |||||| ||||||||||||||||| Sbjct: 61943 gcacttaattggggatgtacttac 61966
>emb|BX901878.6| Zebrafish DNA sequence from clone DKEY-11O15 in linkage group 21, complete sequence Length = 217310 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 cactgagaaatgaaggaaaa 347 |||||||||||||||||||| Sbjct: 93143 cactgagaaatgaaggaaaa 93124
>emb|BX284112.25| Zebrafish DNA sequence from clone DKEYP-75A7 in linkage group 21, complete sequence Length = 216476 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cactgagaaatgaaggaaaa 347 |||||||||||||||||||| Sbjct: 73559 cactgagaaatgaaggaaaa 73578
>emb|BX470110.2| Mouse DNA sequence from clone RP23-374D8 on chromosome 4, complete sequence Length = 194185 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tctagtgtccctgtaattct 302 |||||||||||||||||||| Sbjct: 187247 tctagtgtccctgtaattct 187266
>gb|AC151426.32| Medicago truncatula clone mth2-6o22, complete sequence Length = 116955 Score = 40.1 bits (20), Expect = 5.4 Identities = 38/44 (86%) Strand = Plus / Plus Query: 248 gaaaaatagttgtctgagtagtgtaccggaaggattctagtgtc 291 ||||||||||| |||||||| || ||||| || ||||| ||||| Sbjct: 98753 gaaaaatagttatctgagtaatgaaccgggagaattcttgtgtc 98796
>gb|DQ174430.1| Diaea sp. JEG-696 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tactttacatggatcttatt 104 |||||||||||||||||||| Sbjct: 774 tactttacatggatcttatt 793
>gb|DQ174429.1| Diaea sp. JEG-697 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tactttacatggatcttatt 104 |||||||||||||||||||| Sbjct: 774 tactttacatggatcttatt 793
>gb|DQ174399.1| Diaea sp. JEG-692 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tactttacatggatcttatt 104 |||||||||||||||||||| Sbjct: 774 tactttacatggatcttatt 793
>gb|DQ174374.1| Misumenops melloleitaio isolate 368 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tactttacatggatcttatt 104 |||||||||||||||||||| Sbjct: 774 tactttacatggatcttatt 793
>gb|DQ174373.1| Misumenops melloleitaio isolate 484 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 819 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tactttacatggatcttatt 104 |||||||||||||||||||| Sbjct: 773 tactttacatggatcttatt 792
>emb|BX537275.8| Zebrafish DNA sequence from clone DKEYP-120E12 in linkage group 11, complete sequence Length = 173631 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cactgagaaatgaaggaaaa 347 |||||||||||||||||||| Sbjct: 163771 cactgagaaatgaaggaaaa 163790
>emb|CR761653.2| Xenopus tropicalis finished cDNA, clone TGas033k12 Length = 1786 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tccagcctctcagaatgacc 181 |||||||||||||||||||| Sbjct: 332 tccagcctctcagaatgacc 351
>gb|AC170746.3| Loxodonta africana clone VMRC15-355K9, complete sequence Length = 122744 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 actgagaaatgaaggaaaaa 348 |||||||||||||||||||| Sbjct: 59582 actgagaaatgaaggaaaaa 59563
>emb|BX005168.10| Mouse DNA sequence from clone RP23-204O8 on chromosome X, complete sequence Length = 143588 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 326 tgcactgagaaatgaaggaaaaac 349 |||||||| ||||||||||||||| Sbjct: 29611 tgcactgaaaaatgaaggaaaaac 29634 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,145,251 Number of Sequences: 3902068 Number of extensions: 3145251 Number of successful extensions: 73822 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73739 Number of HSP's gapped (non-prelim): 83 length of query: 401 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 379 effective length of database: 17,147,199,772 effective search space: 6498788713588 effective search space used: 6498788713588 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
