ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
2gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
4dbj|AK070398.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
5dbj|AK065765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
6gb|BT017487.1| Zea mays clone EL01N0412H03.c mRNA sequence 64 4e-07
7gb|AC130187.4| Atelerix albiventris clone LB4-344F17, complete s... 44 0.36
8gb|AC124906.3| Equus caballus clone CH241-268I16, complete sequence 44 0.36
9gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 44 0.36
10gb|AC130784.3| Atelerix albiventris clone LB4-112D1, complete se... 44 0.36
11gb|AC174827.3| Cavia porcellus clone CH234-477P24, complete sequ... 44 0.36
12gb|AC148202.3| Carollia perspicillata clone 598J23, complete seq... 44 0.36
13dbj|AP004492.1| Lotus japonicus genomic DNA, chromosome 4, clone... 44 0.36
14gb|DP000020.1| Equus caballus target 1 genomic scaffold 44 0.36
15gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold 44 0.36
16gb|AY392534.1| Porcine teschovirus isolate DS 756/93 polyprotein... 42 1.4
17gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-... 42 1.4
18gb|AC184157.2| Pan troglodytes BAC clone CH251-31B9 from chromos... 42 1.4
19gb|AC184054.2| Pan troglodytes BAC clone CH251-706J5 from chromo... 42 1.4
20emb|Z48716.1|CEF59B10 Caenorhabditis elegans Cosmid F59B10, comp... 42 1.4
21gb|AC007321.2| Homo sapiens BAC clone RP11-507C1 from 7, complet... 42 1.4
22ref|NM_031506.1| Rattus norvegicus cystic fibrosis transmembrane... 42 1.4
23gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's H... 42 1.4
24gb|AC087433.4|AC087433 Homo sapiens chromosome 15 clone RP11-101... 42 1.4
25gb|AF296101.1|AF296101 Porcine teschovirus strain Sek 549/98 pol... 42 1.4
26gb|AF296091.1|AF296091 Porcine teschovirus strain PS 37 polyprot... 42 1.4
27gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold 42 1.4
28emb|AJ224431.1|RNCFTR3UT Rattus norvegicus CFTR gene 42 1.4
29dbj|AP003471.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.4
30dbj|AP002847.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.4
31emb|AL935147.9| Mouse DNA sequence from clone RP23-33O19 on chro... 42 1.4
32gb|AC162373.11| Mus musculus chromosome 18, clone RP23-410M11, c... 40 5.7
33gb|AY392539.1| Porcine teschovirus isolate UKG/170/80 polyprotei... 40 5.7
34gb|AY392533.1| Porcine teschovirus isolate DS 183/93 polyprotein... 40 5.7
35gb|AC095999.8| Rattus norvegicus 4 BAC CH230-12B2 (Children's Ho... 40 5.7
36gb|AC161886.4| Pan troglodytes BAC clone CH251-708N9 from chromo... 40 5.7
37gb|AC144408.3| Mus musculus BAC clone RP24-326P8 from chromosome... 40 5.7
38emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chro... 40 5.7
39emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in... 40 5.7
40gb|AC126564.7| Homo sapiens 12 BAC RP11-638F5 (Roswell Park Canc... 40 5.7
41emb|CR387927.9| Zebrafish DNA sequence from clone CH211-260P11 i... 40 5.7
42emb|CR381570.12| Zebrafish DNA sequence from clone CH211-74M13 i... 40 5.7
43emb|BX322537.14| Zebrafish DNA sequence from clone CH211-262H21 ... 40 5.7
44gb|AC164165.2| Mus musculus BAC clone RP23-145F16 from chromosom... 40 5.7
45dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 5.7
46gb|AC154454.2| Mus musculus BAC clone RP24-173H15 from chromosom... 40 5.7
47gb|AC021878.4| Homo sapiens BAC clone RP11-18N21 from 4, complet... 40 5.7
48gb|AC146074.4| Pan troglodytes BAC clone RP43-15D8 from chromoso... 40 5.7
49gb|AC154222.2| Mus musculus BAC clone RP24-375M13 from 13, compl... 40 5.7
50emb|AL357615.7|HS373D10 Homo sapiens chromosome 9 BAC RP11-373D1... 40 5.7
51emb|AL391667.19| Human DNA sequence from clone RP11-214L15 on ch... 40 5.7 
>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06,
              complete sequence
          Length = 134001

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                          
Query: 302    gaggcctcgattacctccacttgtctcttaattcctttttctcagatcaaatccaagtaa 361
              ||||||||  |||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 113251 gaggcctcacttacctccacttatctcttaactcctttttctcagaccaaatccaagtaa 113192

                                    
Query: 362    cgaaaagagcagcaaccaatgc 383
              | | ||  ||||||||||||||
Sbjct: 113191 caacaatggcagcaaccaatgc 113170
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>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0042F15, complete sequence
          Length = 162959

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                         
Query: 302   gaggcctcgattacctccacttgtctcttaattcctttttctcagatcaaatccaagtaa 361
             ||||||||  |||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 20440 gaggcctcacttacctccacttatctcttaactcctttttctcagaccaaatccaagtaa 20381

                                   
Query: 362   cgaaaagagcagcaaccaatgc 383
             | | ||  ||||||||||||||
Sbjct: 20380 caacaatggcagcaaccaatgc 20359
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                           
Query: 302     gaggcctcgattacctccacttgtctcttaattcctttttctcagatcaaatccaagtaa 361
               ||||||||  |||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 7835665 gaggcctcacttacctccacttatctcttaactcctttttctcagaccaaatccaagtaa 7835606

                                     
Query: 362     cgaaaagagcagcaaccaatgc 383
               | | ||  ||||||||||||||
Sbjct: 7835605 caacaatggcagcaaccaatgc 7835584
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>dbj|AK070398.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048G06, full
            insert sequence
          Length = 3440

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                        
Query: 302  gaggcctcgattacctccacttgtctcttaattcctttttctcagatcaaatccaagtaa 361
            ||||||||  |||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 3078 gaggcctcacttacctccacttatctcttaactcctttttctcagaccaaatccaagtaa 3019

                                  
Query: 362  cgaaaagagcagcaaccaatgc 383
            | | ||  ||||||||||||||
Sbjct: 3018 caacaatggcagcaaccaatgc 2997
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>dbj|AK065765.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040F09, full
            insert sequence
          Length = 2572

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                        
Query: 302  gaggcctcgattacctccacttgtctcttaattcctttttctcagatcaaatccaagtaa 361
            ||||||||  |||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 2215 gaggcctcacttacctccacttatctcttaactcctttttctcagaccaaatccaagtaa 2156

                                  
Query: 362  cgaaaagagcagcaaccaatgc 383
            | | ||  ||||||||||||||
Sbjct: 2155 caacaatggcagcaaccaatgc 2134
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>gb|BT017487.1| Zea mays clone EL01N0412H03.c mRNA sequence
          Length = 1066

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 78/92 (84%), Gaps = 1/92 (1%)
 Strand = Plus / Minus

                                                                       
Query: 265 gactagggcccaaaatttcatttgcatcacaacattagaggcctcgattacctccacttg 324
           ||||||||||||||||||| |  || ||| |||| | ||| ||| | | |||||||||||
Sbjct: 711 gactagggcccaaaatttcctcagcgtcagaacact-gagaccttgctcacctccacttg 653

                                           
Query: 325 tctcttaattcctttttctcagatcaaatcca 356
           ||||| || |||||||||||||| ||||||||
Sbjct: 652 tctctcaactcctttttctcagaccaaatcca 621
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>gb|AC130187.4| Atelerix albiventris clone LB4-344F17, complete sequence
          Length = 150117

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 276    aaaatttcatttgcatcacaacatta 301
              ||||||||||||||||||||| ||||
Sbjct: 131011 aaaatttcatttgcatcacaaaatta 130986
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>gb|AC124906.3| Equus caballus clone CH241-268I16, complete sequence
          Length = 202908

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 276    aaaatttcatttgcatcacaacatta 301
              ||||||||||||||||||||| ||||
Sbjct: 115191 aaaatttcatttgcatcacaaaatta 115166
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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 276     aaaatttcatttgcatcacaacatta 301
               ||||||||||||||||||||| ||||
Sbjct: 1827450 aaaatttcatttgcatcacaaaatta 1827425
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>gb|AC130784.3| Atelerix albiventris clone LB4-112D1, complete sequence
          Length = 166122

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 276   aaaatttcatttgcatcacaacatta 301
             ||||||||||||||||||||| ||||
Sbjct: 53460 aaaatttcatttgcatcacaaaatta 53435
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>gb|AC174827.3| Cavia porcellus clone CH234-477P24, complete sequence
          Length = 156330

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 276   aaaatttcatttgcatcacaacatta 301
             ||||||||||||||||||||| ||||
Sbjct: 19580 aaaatttcatttgcatcacaaaatta 19555
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>gb|AC148202.3| Carollia perspicillata clone 598J23, complete sequence
          Length = 130753

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 276    aaaatttcatttgcatcacaacatta 301
              ||||||||||||||||||||| ||||
Sbjct: 121925 aaaatttcatttgcatcacaaaatta 121900
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>dbj|AP004492.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT08D16, TM0025a,
            complete sequence
          Length = 51575

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 192  aatcaaatttcactttgaaatg 213
            ||||||||||||||||||||||
Sbjct: 2106 aatcaaatttcactttgaaatg 2127
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>gb|DP000020.1| Equus caballus target 1 genomic scaffold
          Length = 1907055

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 276     aaaatttcatttgcatcacaacatta 301
               ||||||||||||||||||||| ||||
Sbjct: 1505648 aaaatttcatttgcatcacaaaatta 1505623
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>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 276     aaaatttcatttgcatcacaacatta 301
               ||||||||||||||||||||| ||||
Sbjct: 1281640 aaaatttcatttgcatcacaaaatta 1281615
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>gb|AY392534.1| Porcine teschovirus isolate DS 756/93 polyprotein gene, partial cds
          Length = 3721

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 175 tgcagtgtcatcccaagaatcaaat 199
           |||| ||||||||||||||||||||
Sbjct: 729 tgcaatgtcatcccaagaatcaaat 753
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>gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-464J4, complete
             sequence
          Length = 185081

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 276   aaaatttcatttgcatcacaa 296
             |||||||||||||||||||||
Sbjct: 76568 aaaatttcatttgcatcacaa 76548
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>gb|AC184157.2| Pan troglodytes BAC clone CH251-31B9 from chromosome 15, complete
              sequence
          Length = 167965

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 206    ttgaaatgttacataaataatagaa 230
              ||||||||||||||||| |||||||
Sbjct: 136889 ttgaaatgttacataaaaaatagaa 136865
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>gb|AC184054.2| Pan troglodytes BAC clone CH251-706J5 from chromosome 15, complete
             sequence
          Length = 177821

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 206   ttgaaatgttacataaataatagaa 230
             ||||||||||||||||| |||||||
Sbjct: 14591 ttgaaatgttacataaaaaatagaa 14615
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>emb|Z48716.1|CEF59B10 Caenorhabditis elegans Cosmid F59B10, complete sequence
          Length = 27428

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 199   tttcactttgaaatgttacat 219
             |||||||||||||||||||||
Sbjct: 25727 tttcactttgaaatgttacat 25707
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>gb|AC007321.2| Homo sapiens BAC clone RP11-507C1 from 7, complete sequence
          Length = 158770

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    gatctgccagttctttgatgt 140
              |||||||||||||||||||||
Sbjct: 104138 gatctgccagttctttgatgt 104118
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>ref|NM_031506.1| Rattus norvegicus cystic fibrosis transmembrane conductance regulator
            homolog (Cftr), mRNA
          Length = 6287

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 276  aaaatttcatttgcatcacaa 296
            |||||||||||||||||||||
Sbjct: 5872 aaaatttcatttgcatcacaa 5852
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>gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 224687

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 276    aaaatttcatttgcatcacaa 296
              |||||||||||||||||||||
Sbjct: 123697 aaaatttcatttgcatcacaa 123717
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>gb|AC087433.4|AC087433 Homo sapiens chromosome 15 clone RP11-101J17 and RP11-501G11 map 15q21.1,
              complete sequence
          Length = 185145

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 206    ttgaaatgttacataaataatagaa 230
              ||||||||||||||||| |||||||
Sbjct: 113538 ttgaaatgttacataaaaaatagaa 113562
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>gb|AF296101.1|AF296101 Porcine teschovirus strain Sek 549/98 polyprotein gene, partial cds
          Length = 3434

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 175 tgcagtgtcatcccaagaatcaaat 199
           |||| ||||||||||||||||||||
Sbjct: 453 tgcaatgtcatcccaagaatcaaat 477
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>gb|AF296091.1|AF296091 Porcine teschovirus strain PS 37 polyprotein gene, complete cds
          Length = 7018

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 175 tgcagtgtcatcccaagaatcaaat 199
           |||| ||||||||||||||||||||
Sbjct: 703 tgcaatgtcatcccaagaatcaaat 727
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>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 276     aaaatttcatttgcatcacaa 296
               |||||||||||||||||||||
Sbjct: 1409740 aaaatttcatttgcatcacaa 1409720
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>emb|AJ224431.1|RNCFTR3UT Rattus norvegicus CFTR gene
          Length = 5082

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 276  aaaatttcatttgcatcacaa 296
            |||||||||||||||||||||
Sbjct: 1962 aaaatttcatttgcatcacaa 1942
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>dbj|AP003471.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1552D7
          Length = 160912

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 323    tgtctcttaattcctttttct 343
              |||||||||||||||||||||
Sbjct: 127623 tgtctcttaattcctttttct 127603
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>dbj|AP002847.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1742H10
          Length = 155723

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 323   tgtctcttaattcctttttct 343
             |||||||||||||||||||||
Sbjct: 46779 tgtctcttaattcctttttct 46759
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>emb|AL935147.9| Mouse DNA sequence from clone RP23-33O19 on chromosome 2, complete
              sequence
          Length = 241249

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 206    ttgaaatgttacataaataat 226
              |||||||||||||||||||||
Sbjct: 132441 ttgaaatgttacataaataat 132461
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>gb|AC162373.11| Mus musculus chromosome 18, clone RP23-410M11, complete sequence
          Length = 173382

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 191    gaatcaaatttcactttgaaatgt 214
              ||||||||||||| ||||||||||
Sbjct: 107600 gaatcaaatttcagtttgaaatgt 107577
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>gb|AY392539.1| Porcine teschovirus isolate UKG/170/80 polyprotein gene, partial
           cds
          Length = 3300

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 180 tgtcatcccaagaatcaaat 199
           ||||||||||||||||||||
Sbjct: 710 tgtcatcccaagaatcaaat 729
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>gb|AY392533.1| Porcine teschovirus isolate DS 183/93 polyprotein gene, partial cds
          Length = 3684

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 175 tgcagtgtcatcccaagaatcaaa 198
           |||| |||||||||||||||||||
Sbjct: 715 tgcaatgtcatcccaagaatcaaa 738
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>gb|AC095999.8| Rattus norvegicus 4 BAC CH230-12B2 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 217673

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    tttgaaatgttacataaata 224
              ||||||||||||||||||||
Sbjct: 181450 tttgaaatgttacataaata 181469
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>gb|AC161886.4| Pan troglodytes BAC clone CH251-708N9 from chromosome 7, complete
              sequence
          Length = 205419

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 199    tttcactttgaaatgttacataaataat 226
              |||| ||||||||||| |||||||||||
Sbjct: 187735 tttccctttgaaatgtcacataaataat 187708
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>gb|AC144408.3| Mus musculus BAC clone RP24-326P8 from chromosome 16, complete sequence
          Length = 167601

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    aagttacaaagcactaacat 61
             ||||||||||||||||||||
Sbjct: 72017 aagttacaaagcactaacat 71998
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>emb|AL590240.5| Human DNA sequence from clone RP11-266I3 on chromosome X Contains a
             likely ortholog of mouse hepatoma-derived growth factor
             related protein 3 pseudogene (HDGFRP3), a novel protein
             similar to PAGE-5 protein (LOC203569), a novel protein
             similar to PAGE-5 protein (LOC139795), gene FLJ20434, a
             cytochrome c oxidase I (MTCO1) pseudogene, a G antigen,
             family D pseudogene and a CpG island, complete sequence
          Length = 130005

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   aattcctttttctcagatca 350
             ||||||||||||||||||||
Sbjct: 51144 aattcctttttctcagatca 51163
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>emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in linkage group 24,
             complete sequence
          Length = 152666

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    ttacaaagcactaacattct 64
             ||||||||||||||||||||
Sbjct: 62955 ttacaaagcactaacattct 62936
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>gb|AC126564.7| Homo sapiens 12 BAC RP11-638F5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 121242

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ttgaaatgttacataaataa 225
             ||||||||||||||||||||
Sbjct: 11611 ttgaaatgttacataaataa 11592
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>emb|CR387927.9| Zebrafish DNA sequence from clone CH211-260P11 in linkage group 14,
             complete sequence
          Length = 149672

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   gaaaagagcagcaaccaatg 382
             ||||||||||||||||||||
Sbjct: 32876 gaaaagagcagcaaccaatg 32895
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>emb|CR381570.12| Zebrafish DNA sequence from clone CH211-74M13 in linkage group 10,
             complete sequence
          Length = 151591

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   tttcatttgcatcacaacat 299
             ||||||||||||||||||||
Sbjct: 10212 tttcatttgcatcacaacat 10231
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>emb|BX322537.14| Zebrafish DNA sequence from clone CH211-262H21 in linkage group 23,
            complete sequence
          Length = 26459

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   ggtcgctgaggtacatttca 96
            ||||||||||||||||||||
Sbjct: 9306 ggtcgctgaggtacatttca 9325
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>gb|AC164165.2| Mus musculus BAC clone RP23-145F16 from chromosome 16, complete
             sequence
          Length = 214546

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    aagttacaaagcactaacat 61
             ||||||||||||||||||||
Sbjct: 66562 aagttacaaagcactaacat 66543
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>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 22      ttgaatatgagaacttcaat 41
               ||||||||||||||||||||
Sbjct: 1266047 ttgaatatgagaacttcaat 1266028
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>gb|AC154454.2| Mus musculus BAC clone RP24-173H15 from chromosome 13, complete
             sequence
          Length = 181147

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   ttttctcagatcaaatccaa 357
             ||||||||||||||||||||
Sbjct: 12219 ttttctcagatcaaatccaa 12200
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>gb|AC021878.4| Homo sapiens BAC clone RP11-18N21 from 4, complete sequence
          Length = 161391

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    taacattctgctgaaaagtttggt 79
             ||||||| ||||||||||||||||
Sbjct: 87888 taacattttgctgaaaagtttggt 87865
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>gb|AC146074.4| Pan troglodytes BAC clone RP43-15D8 from chromosome 7, complete sequence
          Length = 196799

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 199    tttcactttgaaatgttacataaataat 226
              |||| ||||||||||| |||||||||||
Sbjct: 180873 tttccctttgaaatgtcacataaataat 180846
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>gb|AC154222.2| Mus musculus BAC clone RP24-375M13 from 13, complete sequence
          Length = 169114

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    ttttctcagatcaaatccaa 357
              ||||||||||||||||||||
Sbjct: 148337 ttttctcagatcaaatccaa 148318
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>emb|AL357615.7|HS373D10 Homo sapiens chromosome 9 BAC RP11-373D10, complete sequence
          Length = 171446

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   aaatgttacataaataatag 228
             ||||||||||||||||||||
Sbjct: 55753 aaatgttacataaataatag 55734
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>emb|AL391667.19| Human DNA sequence from clone RP11-214L15 on chromosome 9, complete
             sequence
          Length = 110444

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   aaatgttacataaataatag 228
             ||||||||||||||||||||
Sbjct: 23070 aaatgttacataaataatag 23051


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,288,603
Number of Sequences: 3902068
Number of extensions: 4288603
Number of successful extensions: 93629
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93475
Number of HSP's gapped (non-prelim): 154
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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