>RBBP8_HUMAN (Q99708) Retinoblastoma-binding protein 8 (RBBP-8)|
           (CtBP-interacting protein) (CtIP)
           (Retinoblastoma-interacting protein and myosin-like)
           (RIM)
          Length = 897

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
 Frame = +1

Query: 187 EQDNAQKNKKKLSEQY-----NTILHPRARLRCNQDSSVGYQTSEKNFKGLNLL 333
           E++  Q+  KKLSEQ      N   H  A L C +D       +  +F G+N L
Sbjct: 123 ERNTLQEENKKLSEQLQQKIENDQQHQAAELECEEDVIPDSPITAFSFSGVNRL 176

>DNAJ_TETHA (Q93R26) Chaperone protein dnaJ|
          Length = 386

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 157 LQKSYYSTLVEQDNAQKNKKKLSEQYNTILHPRARLRCNQDSSVGYQTSEKNFKG 321
           L K Y+  + ++ +A++  KK  +  NT+  P+ R   +Q    G+  ++ NF G
Sbjct: 29  LSKKYHPDVNQEADAEEKFKKFQKPMNTLSDPQKRAAYDQ---YGHAGADANFGG 80

>YDFN_BACSU (P96692) Putative NAD(P)H nitroreductase ydfN (EC 1.-.-.-)|
          Length = 206

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 154 NLQKSYYSTLVEQDNAQKNKKKLSEQYNTILHPRARLRCNQDSSVGYQTSEKNFKGLNLL 333
           NLQ + Y T+++QD  +K K+  + QY  +      L      +  YQ +   ++GL +L
Sbjct: 43  NLQHTKYVTVLDQDVKEKLKQAANGQYKVVSSSAVLLVLGDKQA--YQQAADIYEGLKVL 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,001,365
Number of Sequences: 219361
Number of extensions: 1421531
Number of successful extensions: 3556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3556
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)