Clone Information

BLAST Search Result

Clone Name	rbastl02f03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ243961.1\|OSA243961 Oryza sativa chromosome 4 BAC l1332 gen...	109	8e-21
2	emb\|AL117264.3\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	109	8e-21
3	ref\|XM_473915.1\| Oryza sativa (japonica cultivar-group), predic...	101	2e-18
4	emb\|AL662970.2\|OSJN00174 Oryza sativa genomic DNA, chromosome 4,...	101	2e-18
5	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	101	2e-18
6	dbj\|AK119568.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	101	2e-18
7	dbj\|AK069252.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	101	2e-18
8	dbj\|AK065956.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	101	2e-18
9	gb\|AC006222.1\|AC006222 Homo sapiens, clone hRPK.12_A_1, complete...	46	0.10
10	dbj\|AP006127.1\| Lotus japonicus genomic DNA, chromosome 5, clone...	46	0.10
11	ref\|XM_532141.2\| PREDICTED: Canis familiaris similar to Male-enh...	42	1.6
12	ref\|XM_538927.2\| PREDICTED: Canis familiaris similar to delta is...	42	1.6
13	ref\|XM_860085.1\| PREDICTED: Canis familiaris similar to delta is...	42	1.6
14	ref\|XM_860068.1\| PREDICTED: Canis familiaris similar to delta is...	42	1.6
15	ref\|XM_503025.1\| Yarrowia lipolytica CLIB122, YALI0D19294g predi...	42	1.6
16	emb\|AL121834.20\|HSJ509I19 Human DNA sequence from clone RP3-509I...	42	1.6
17	emb\|AL732484.13\| Mouse DNA sequence from clone RP23-37B7 on chro...	42	1.6
18	gb\|AC117402.9\| Homo sapiens 3 BAC RP11-553A10 (Roswell Park Canc...	42	1.6
19	dbj\|AK024197.1\| Homo sapiens cDNA FLJ14135 fis, clone MAMMA1002728	42	1.6
20	gb\|AC093732.3\| Homo sapiens BAC clone RP11-15I20 from 2, complet...	42	1.6
21	gb\|AC006963.4\|AC006963 Homo sapiens PAC clone RP1-278D1 from X, ...	42	1.6
22	emb\|CR382130.1\| Yarrowia lipolytica chromosome D of strain CLIB1...	42	1.6
23	gb\|DP000013.1\| Otolemur garnettii target 1 genomic scaffold	40	6.2
24	gb\|AC109509.20\| Mus musculus chromosome 14, clone RP23-16M15, co...	40	6.2
25	gb\|AC158514.2\| Mus musculus BAC clone RP24-480D16 from chromosom...	40	6.2
26	gb\|AC120375.11\| Mus musculus chromosome 14, clone RP24-123H11, c...	40	6.2
27	gb\|BC072115.1\| Xenopus laevis hypothetical protein LOC398626, mR...	40	6.2
28	ref\|XM_713297.1\| Candida albicans SC5314 putative calcium channe...	40	6.2
29	ref\|XM_713028.1\| Candida albicans SC5314 putative calcium channe...	40	6.2
30	emb\|AJ874546.1\| Oryctolagus cuniculus microsatellite DNA, locus ...	40	6.2
31	gb\|AC123921.3\| Mus musculus BAC clone RP24-180J14 from chromosom...	40	6.2
32	ref\|XM_646142.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	6.2
33	ref\|XM_947472.1\| Theileria annulata strain Ankara hypothetical p...	40	6.2
34	emb\|AL163280.2\|HS21C080 Homo sapiens chromosome 21 segment HS21C080	40	6.2
35	gb\|AC021749.6\| Homo sapiens chromosome 11, clone RP11-810F22, co...	40	6.2
36	gb\|AC183387.3\| Pan troglodytes BAC clone CH251-113M12 from chrom...	40	6.2
37	gb\|AC160924.1\| Medicago truncatula chromosome 7 BAC clone mte1-7...	40	6.2
38	gb\|AC010747.10\| Homo sapiens BAC clone RP11-555H9 from 2, comple...	40	6.2
39	gb\|AC155886.2\| Medicago truncatula chromosome 7 BAC clone mth2-1...	40	6.2
40	gb\|AC146357.3\| Otolemur garnettii clone CH256-396G19, complete s...	40	6.2
41	gb\|AY166604.1\| Candida albicans alpha-1 calcium channel subunit ...	40	6.2
42	dbj\|BA000019.2\| Nostoc sp. PCC 7120 DNA, complete genome	40	6.2
43	emb\|BX005447.8\| Zebrafish DNA sequence from clone DKEY-29B14, co...	40	6.2
44	emb\|AL929264.4\| Zebrafish DNA sequence from clone CH211-59C24 in...	40	6.2
45	emb\|AL954226.2\|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-1...	40	6.2
46	emb\|AL805963.23\| Mouse DNA sequence from clone RP23-98K7 on chro...	40	6.2
47	emb\|AL773586.6\| Mouse DNA sequence from clone RP23-18P19 on chro...	40	6.2
48	gb\|AF121897.4\| Homo sapiens chromosome 21 clone RP1-160L9 map 21...	40	6.2

>emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 genomic sequences
          Length = 74658

 Score =  109 bits (55), Expect = 8e-21
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                         
Query: 347   ctttgggtgatgctcctcttccccctccctgatatgaggcatgctaaaagacatgtcagc 406
             ||||| |||||| |||||||| ||||| ||||||||||||| |||||| ||||| || ||
Sbjct: 28663 ctttgagtgatgttcctcttctccctctctgatatgaggcaggctaaaggacatatcggc 28604

                                                    
Query: 407   gaaccccagttcactgcttccaaatgactcgcagtccac 445
             ||| ||||||||||||||||||||||| || ||||||||
Sbjct: 28603 gaatcccagttcactgcttccaaatgattcacagtccac 28565



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                         
Query: 153   caatctacaaaaatcctattattctacacttgtcgagcaggaca 196
             ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 28868 caatctacaaaaatcctattattctacacttgttgaacaggaca 28825



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 10    aattatattattagtaagatttatacaggtcacacagg 47
             ||||||||||| |||| |||||||||||||||||||||
Sbjct: 29002 aattatattatcagtacgatttatacaggtcacacagg 28965

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>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete
              sequence
          Length = 131195

 Score =  109 bits (55), Expect = 8e-21
 Identities = 88/99 (88%)
 Strand = Plus / Plus

                                                                          
Query: 347    ctttgggtgatgctcctcttccccctccctgatatgaggcatgctaaaagacatgtcagc 406
              ||||| |||||| |||||||| ||||| ||||||||||||| |||||| ||||| || ||
Sbjct: 130733 ctttgagtgatgttcctcttctccctctctgatatgaggcaggctaaaggacatatcggc 130792

                                                     
Query: 407    gaaccccagttcactgcttccaaatgactcgcagtccac 445
              ||| ||||||||||||||||||||||| || ||||||||
Sbjct: 130793 gaatcccagttcactgcttccaaatgattcacagtccac 130831



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                          
Query: 153    caatctacaaaaatcctattattctacacttgtcgagcaggaca 196
              ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 130528 caatctacaaaaatcctattattctacacttgttgaacaggaca 130571



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                    
Query: 10     aattatattattagtaagatttatacaggtcacacagg 47
              ||||||||||| |||| |||||||||||||||||||||
Sbjct: 130394 aattatattatcagtacgatttatacaggtcacacagg 130431

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>ref|XM_473915.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2535

 Score =  101 bits (51), Expect = 2e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                        
Query: 347  ctttgggtgatgctcctcttccccctccctgatatgaggcatgctaaaagacatgtcagc 406
            ||||| |||||| |||||||| ||||| ||||||||||||| |||||| ||||| || ||
Sbjct: 2502 ctttgagtgatgttcctcttctccctctctgatatgaggcaggctaaaggacatatcggc 2443

                                                   
Query: 407  gaaccccagttcactgcttccaaatgactcgcagtccac 445
             || ||||||||||||||||||||||| || ||||||||
Sbjct: 2442 aaatcccagttcactgcttccaaatgattcacagtccac 2404

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>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23,
             complete sequence
          Length = 164805

 Score =  101 bits (51), Expect = 2e-18
 Identities = 87/99 (87%)
 Strand = Plus / Plus

                                                                         
Query: 347   ctttgggtgatgctcctcttccccctccctgatatgaggcatgctaaaagacatgtcagc 406
             ||||| |||||| |||||||| ||||| ||||||||||||| |||||| ||||| || ||
Sbjct: 90308 ctttgagtgatgttcctcttctccctctctgatatgaggcaggctaaaggacatatcggc 90367

                                                    
Query: 407   gaaccccagttcactgcttccaaatgactcgcagtccac 445
              || ||||||||||||||||||||||| || ||||||||
Sbjct: 90368 aaatcccagttcactgcttccaaatgattcacagtccac 90406



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                         
Query: 153   caatctacaaaaatcctattattctacacttgtcgagcaggaca 196
             ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 90104 caatctacaaaaatcctattattctacacttgttgaacaggaca 90147



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 10    aattatattattagtaagatttatacaggtcacacagg 47
             ||||||||||| |||| |||||||||||||||||||||
Sbjct: 89968 aattatattatcagtacgatttatacaggtcacacagg 90005

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  101 bits (51), Expect = 2e-18
 Identities = 87/99 (87%)
 Strand = Plus / Plus

                                                                            
Query: 347      ctttgggtgatgctcctcttccccctccctgatatgaggcatgctaaaagacatgtcagc 406
                ||||| |||||| |||||||| ||||| ||||||||||||| |||||| ||||| || ||
Sbjct: 31512625 ctttgagtgatgttcctcttctccctctctgatatgaggcaggctaaaggacatatcggc 31512684

                                                       
Query: 407      gaaccccagttcactgcttccaaatgactcgcagtccac 445
                 || ||||||||||||||||||||||| || ||||||||
Sbjct: 31512685 aaatcccagttcactgcttccaaatgattcacagtccac 31512723



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                            
Query: 153      caatctacaaaaatcctattattctacacttgtcgagcaggaca 196
                ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 31512421 caatctacaaaaatcctattattctacacttgttgaacaggaca 31512464



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 10       aattatattattagtaagatttatacaggtcacacagg 47
                ||||||||||| |||| |||||||||||||||||||||
Sbjct: 31512285 aattatattatcagtacgatttatacaggtcacacagg 31512322

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>dbj|AK119568.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-A07, full
            insert sequence
          Length = 3421

 Score =  101 bits (51), Expect = 2e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                        
Query: 347  ctttgggtgatgctcctcttccccctccctgatatgaggcatgctaaaagacatgtcagc 406
            ||||| |||||| |||||||| ||||| ||||||||||||| |||||| ||||| || ||
Sbjct: 3060 ctttgagtgatgttcctcttctccctctctgatatgaggcaggctaaaggacatatcggc 3001

                                                   
Query: 407  gaaccccagttcactgcttccaaatgactcgcagtccac 445
             || ||||||||||||||||||||||| || ||||||||
Sbjct: 3000 aaatcccagttcactgcttccaaatgattcacagtccac 2962



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 153  caatctacaaaaatcctattattctacacttgtcgagcaggaca 196
            ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 3264 caatctacaaaaatcctattattctacacttgttgaacaggaca 3221



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 10   aattatattattagtaagatttatacaggtcacacagg 47
            ||||||||||| |||| |||||||||||||||||||||
Sbjct: 3399 aattatattatcagtacgatttatacaggtcacacagg 3362

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>dbj|AK069252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023015B12, full
            insert sequence
          Length = 3208

 Score =  101 bits (51), Expect = 2e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                        
Query: 347  ctttgggtgatgctcctcttccccctccctgatatgaggcatgctaaaagacatgtcagc 406
            ||||| |||||| |||||||| ||||| ||||||||||||| |||||| ||||| || ||
Sbjct: 2954 ctttgagtgatgttcctcttctccctctctgatatgaggcaggctaaaggacatatcggc 2895

                                                   
Query: 407  gaaccccagttcactgcttccaaatgactcgcagtccac 445
             || ||||||||||||||||||||||| || ||||||||
Sbjct: 2894 aaatcccagttcactgcttccaaatgattcacagtccac 2856



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 153  caatctacaaaaatcctattattctacacttgtcgagcaggaca 196
            ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 3158 caatctacaaaaatcctattattctacacttgttgaacaggaca 3115

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>dbj|AK065956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044D11, full
            insert sequence
          Length = 3352

 Score =  101 bits (51), Expect = 2e-18
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                        
Query: 347  ctttgggtgatgctcctcttccccctccctgatatgaggcatgctaaaagacatgtcagc 406
            ||||| |||||| |||||||| ||||| ||||||||||||| |||||| ||||| || ||
Sbjct: 2902 ctttgagtgatgttcctcttctccctctctgatatgaggcaggctaaaggacatatcggc 2843

                                                   
Query: 407  gaaccccagttcactgcttccaaatgactcgcagtccac 445
             || ||||||||||||||||||||||| || ||||||||
Sbjct: 2842 aaatcccagttcactgcttccaaatgattcacagtccac 2804



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 153  caatctacaaaaatcctattattctacacttgtcgagcaggaca 196
            ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 3106 caatctacaaaaatcctattattctacacttgttgaacaggaca 3063



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 10   aattatattattagtaagatttatacaggtcacacagg 47
            ||||||||||| |||| |||||||||||||||||||||
Sbjct: 3242 aattatattatcagtacgatttatacaggtcacacagg 3205

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>gb|AC006222.1|AC006222 Homo sapiens, clone hRPK.12_A_1, complete sequence
          Length = 165643

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 206   agaataagaagaaactaagtgaa 228
             |||||||||||||||||||||||
Sbjct: 39154 agaataagaagaaactaagtgaa 39176

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>dbj|AP006127.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT48O21, TM0211,
              complete sequence
          Length = 137303

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 204    aaagaataagaagaaactaagtgaaca 230
              ||||||||||||||||||| |||||||
Sbjct: 130633 aaagaataagaagaaactatgtgaaca 130659

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>ref|XM_532141.2| PREDICTED: Canis familiaris similar to Male-enhanced antigen-1
            (Mea-1) (LOC474906), mRNA
          Length = 1418

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 356  atgctcctcttccccctccct 376
            |||||||||||||||||||||
Sbjct: 1417 atgctcctcttccccctccct 1397

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>ref|XM_538927.2| PREDICTED: Canis familiaris similar to delta isoform of regulatory
            subunit B56, protein phosphatase 2A isoform 2, transcript
            variant 1 (LOC481806), mRNA
          Length = 3209

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 356  atgctcctcttccccctccct 376
            |||||||||||||||||||||
Sbjct: 2192 atgctcctcttccccctccct 2212

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>ref|XM_860085.1| PREDICTED: Canis familiaris similar to delta isoform of regulatory
            subunit B56, protein phosphatase 2A isoform 2, transcript
            variant 4 (LOC481806), mRNA
          Length = 2915

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 356  atgctcctcttccccctccct 376
            |||||||||||||||||||||
Sbjct: 1898 atgctcctcttccccctccct 1918

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>ref|XM_860068.1| PREDICTED: Canis familiaris similar to delta isoform of regulatory
            subunit B56, protein phosphatase 2A isoform 2, transcript
            variant 3 (LOC481806), mRNA
          Length = 2319

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 356  atgctcctcttccccctccct 376
            |||||||||||||||||||||
Sbjct: 1302 atgctcctcttccccctccct 1322

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>ref|XM_503025.1| Yarrowia lipolytica CLIB122, YALI0D19294g predicted mRNA
          Length = 675

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 429 aatgactcgcagtccacgttg 449
           |||||||||||||||||||||
Sbjct: 166 aatgactcgcagtccacgttg 186

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>emb|AL121834.20|HSJ509I19 Human DNA sequence from clone RP3-509I19 on chromosome 6q23.1-24.1
              Contains a novel gene (includes DKFZP586D0623), the gene
              for a novel protein similar to mouse f-box only protein 16
              (Fbxo16) (Fbx16), a novel 7 transmembrane receptor
              (rhodopsin family) pseudogene similar to CCRL1, a novel
              gene, a suppressor of mif two 3 homolog 2 (yeast) (SMT3H2)
              pseudogene, the REPS1 gene for RALBP1 associated Eps domain
              containing 1 and two CpG islands, complete sequence
          Length = 178159

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     acacaggaagaactacatgaa 61
              |||||||||||||||||||||
Sbjct: 144755 acacaggaagaactacatgaa 144775

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>emb|AL732484.13| Mouse DNA sequence from clone RP23-37B7 on chromosome 2, complete
             sequence
          Length = 201265

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   gggggctggggagagggggca 154
             |||||||||||||||||||||
Sbjct: 45566 gggggctggggagagggggca 45546

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>gb|AC117402.9| Homo sapiens 3 BAC RP11-553A10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166999

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 194   acaatgcccaaaagaataaga 214
             |||||||||||||||||||||
Sbjct: 14581 acaatgcccaaaagaataaga 14561

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>dbj|AK024197.1| Homo sapiens cDNA FLJ14135 fis, clone MAMMA1002728
          Length = 1784

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 41   acacaggaagaactacatgaa 61
            |||||||||||||||||||||
Sbjct: 1129 acacaggaagaactacatgaa 1109

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>gb|AC093732.3| Homo sapiens BAC clone RP11-15I20 from 2, complete sequence
          Length = 133209

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 357   tgctcctcttccccctccctg 377
             |||||||||||||||||||||
Sbjct: 82591 tgctcctcttccccctccctg 82571

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>gb|AC006963.4|AC006963 Homo sapiens PAC clone RP1-278D1 from X, complete sequence
          Length = 88215

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 203   aaaagaataagaagaaactaa 223
             |||||||||||||||||||||
Sbjct: 45346 aaaagaataagaagaaactaa 45326

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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 429     aatgactcgcagtccacgttg 449
               |||||||||||||||||||||
Sbjct: 2437577 aatgactcgcagtccacgttg 2437597

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>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold
          Length = 1743090

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 229     caatataacacaattttaca 248
               ||||||||||||||||||||
Sbjct: 1221441 caatataacacaattttaca 1221460

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>gb|AC109509.20| Mus musculus chromosome 14, clone RP23-16M15, complete sequence
          Length = 216410

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 355    gatgctcctcttccccctcc 374
              ||||||||||||||||||||
Sbjct: 162589 gatgctcctcttccccctcc 162608

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>gb|AC158514.2| Mus musculus BAC clone RP24-480D16 from chromosome 12, complete sequence
          Length = 204825

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     acaggaagaactacatgaaa 62
              ||||||||||||||||||||
Sbjct: 179921 acaggaagaactacatgaaa 179902

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>gb|AC120375.11| Mus musculus chromosome 14, clone RP24-123H11, complete sequence
          Length = 158760

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 355   gatgctcctcttccccctcc 374
             ||||||||||||||||||||
Sbjct: 13066 gatgctcctcttccccctcc 13085

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>gb|BC072115.1| Xenopus laevis hypothetical protein LOC398626, mRNA (cDNA clone
            MGC:79104 IMAGE:5048785), complete cds
          Length = 3808

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  tgctcctcttccccctccct 376
            ||||||||||||||||||||
Sbjct: 1981 tgctcctcttccccctccct 2000

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>ref|XM_713297.1| Candida albicans SC5314 putative calcium channel (CaO19_10808), mRNA
          Length = 6765

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    gaaggatggaattatattat 20
            ||||||||||||||||||||
Sbjct: 5503 gaaggatggaattatattat 5522

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>ref|XM_713028.1| Candida albicans SC5314 putative calcium channel (CaO19_3298), mRNA
          Length = 6765

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    gaaggatggaattatattat 20
            ||||||||||||||||||||
Sbjct: 5503 gaaggatggaattatattat 5522

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>emb|AJ874546.1| Oryctolagus cuniculus microsatellite DNA, locus OCU-INRACCDDV0212,
           clone LBAB-840C12
          Length = 204

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 357 tgctcctcttccccctccct 376
           ||||||||||||||||||||
Sbjct: 58  tgctcctcttccccctccct 39

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>gb|AC123921.3| Mus musculus BAC clone RP24-180J14 from chromosome 8, complete sequence
          Length = 183936

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 274    caggatagttcagtgggtta 293
              ||||||||||||||||||||
Sbjct: 125399 caggatagttcagtgggtta 125380

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>ref|XM_646142.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (175.t00020)
           partial mRNA
          Length = 699

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 200 cccaaaagaataagaagaaactaa 223
           |||||||||| |||||||||||||
Sbjct: 54  cccaaaagaagaagaagaaactaa 77

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>ref|XM_947472.1| Theileria annulata strain Ankara hypothetical protein (TA11600)
            partial mRNA
          Length = 2631

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  aatcctattattctacactt 183
            ||||||||||||||||||||
Sbjct: 1244 aatcctattattctacactt 1225

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>emb|AL163280.2|HS21C080 Homo sapiens chromosome 21 segment HS21C080
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   ggctggggagagggggcaat 156
             ||||||||||||||||||||
Sbjct: 52576 ggctggggagagggggcaat 52595

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>gb|AC021749.6| Homo sapiens chromosome 11, clone RP11-810F22, complete sequence
          Length = 193997

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    cccaaaagaataagaagaaa 219
              ||||||||||||||||||||
Sbjct: 100400 cccaaaagaataagaagaaa 100419

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>gb|AC183387.3| Pan troglodytes BAC clone CH251-113M12 from chromosome unknown, complete
              sequence
          Length = 175955

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    gtgatgctcctcttccccct 372
              ||||||||||||||||||||
Sbjct: 156957 gtgatgctcctcttccccct 156976

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>gb|AC160924.1| Medicago truncatula chromosome 7 BAC clone mte1-74g1, complete sequence
          Length = 98471

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   ccaaaagaataagaagaaac 220
             ||||||||||||||||||||
Sbjct: 83516 ccaaaagaataagaagaaac 83497

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>gb|AC010747.10| Homo sapiens BAC clone RP11-555H9 from 2, complete sequence
          Length = 159512

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 376   tgatatgaggcatgctaaaagaca 399
             |||||| |||||||||||||||||
Sbjct: 50177 tgatataaggcatgctaaaagaca 50200

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>gb|AC155886.2| Medicago truncatula chromosome 7 BAC clone mth2-173o24, complete sequence
          Length = 119696

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    ccaaaagaataagaagaaac 220
              ||||||||||||||||||||
Sbjct: 104169 ccaaaagaataagaagaaac 104188

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>gb|AC146357.3| Otolemur garnettii clone CH256-396G19, complete sequence
          Length = 181866

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    caatataacacaattttaca 248
              ||||||||||||||||||||
Sbjct: 115390 caatataacacaattttaca 115409

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>gb|AY166604.1| Candida albicans alpha-1 calcium channel subunit Cch1 gene, complete
            cds
          Length = 6765

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    gaaggatggaattatattat 20
            ||||||||||||||||||||
Sbjct: 5503 gaaggatggaattatattat 5522

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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 361    cctcttccccctccctgatatgag 384
              ||||||||| ||||||||||||||
Sbjct: 228591 cctcttcccactccctgatatgag 228614

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>emb|BX005447.8| Zebrafish DNA sequence from clone DKEY-29B14, complete sequence
          Length = 283185

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    aattatattattagtaagatttat 33
             |||||||||| |||||||||||||
Sbjct: 13040 aattatattaatagtaagatttat 13017

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>emb|AL929264.4| Zebrafish DNA sequence from clone CH211-59C24 in linkage group 18,
             complete sequence
          Length = 171914

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   gctggggagagggggcaatc 157
             ||||||||||||||||||||
Sbjct: 95700 gctggggagagggggcaatc 95719

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>emb|AL954226.2|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-126M21, complete sequence
          Length = 188320

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   ggctggggagagggggcaat 156
             ||||||||||||||||||||
Sbjct: 97324 ggctggggagagggggcaat 97343

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>emb|AL805963.23| Mouse DNA sequence from clone RP23-98K7 on chromosome X, complete
             sequence
          Length = 233546

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   caggatagttcagtgggtta 293
             ||||||||||||||||||||
Sbjct: 34322 caggatagttcagtgggtta 34303

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>emb|AL773586.6| Mouse DNA sequence from clone RP23-18P19 on chromosome 2, complete
             sequence
          Length = 208141

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    caatgggttgaacaaatcac 84
             ||||||||||||||||||||
Sbjct: 92592 caatgggttgaacaaatcac 92573

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>gb|AF121897.4| Homo sapiens chromosome 21 clone RP1-160L9 map 21q22.2, complete
             sequence
          Length = 132088

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   ggctggggagagggggcaat 156
             ||||||||||||||||||||
Sbjct: 56816 ggctggggagagggggcaat 56835


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,315,880
Number of Sequences: 3902068
Number of extensions: 4315880
Number of successful extensions: 94627
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94432
Number of HSP's gapped (non-prelim): 188
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result