ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
3emb|AL731883.4|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.1
4gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, com... 40 4.3
5gb|AC145798.2| Xenopus tropicalis clone CH216-53L7, complete seq... 40 4.3
6gb|AC149073.2| Sequence of an X. tropicalis BAC clone containing... 40 4.3
7gb|AC162896.3| Mus musculus chromosome 5, clone RP24-318J14, com... 40 4.3
8gb|AC112998.15| Mus musculus chromosome 3, clone RP23-147E7, com... 40 4.3
9gb|AF293848.1| Pyricularia grisea cyclophilin (CYP1) gene, compl... 40 4.3
10gb|BC084984.1| Xenopus laevis hypothetical LOC495457, mRNA (cDNA... 40 4.3
11gb|U61059.1|SOU61059 Saguinus oedipus clone 1686.40 T-cell recep... 40 4.3
12gb|U62993.1|CJU62993 Callithrix jacchus T-cell receptor beta cha... 40 4.3
13dbj|AB062672.1| Magnaporthe grisea CYP1 gene for cyclophilin, co... 40 4.3
14emb|AL672035.7| Mouse DNA sequence from clone RP23-314N8 on chro... 40 4.3

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 261      attgatggaggtacaacacaa 281
                |||||||||||||||||||||
Sbjct: 12998761 attgatggaggtacaacacaa 12998781



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 261      attgatggaggtacaacacaa 281
                |||||||||||||||||||||
Sbjct: 12953035 attgatggaggtacaacacaa 12953055



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>emb|AL731883.4|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 148110

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 261   attgatggaggtacaacacaa 281
             |||||||||||||||||||||
Sbjct: 69209 attgatggaggtacaacacaa 69189



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>gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, complete sequence
          Length = 198469

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   catttcttctttcctgtctt 137
             ||||||||||||||||||||
Sbjct: 56549 catttcttctttcctgtctt 56568



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>gb|AC145798.2| Xenopus tropicalis clone CH216-53L7, complete sequence
          Length = 156486

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   gaatgttacatttcttcttt 129
             ||||||||||||||||||||
Sbjct: 58548 gaatgttacatttcttcttt 58567



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>gb|AC149073.2| Sequence of an X. tropicalis BAC clone containing the bambi gene,
             complete sequence
          Length = 75688

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   gaatgttacatttcttcttt 129
             ||||||||||||||||||||
Sbjct: 27440 gaatgttacatttcttcttt 27421



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>gb|AC162896.3| Mus musculus chromosome 5, clone RP24-318J14, complete sequence
          Length = 180319

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    catttcttctttcctgtctt 137
              ||||||||||||||||||||
Sbjct: 123482 catttcttctttcctgtctt 123501



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>gb|AC112998.15| Mus musculus chromosome 3, clone RP23-147E7, complete sequence
          Length = 203273

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 115   ttacatttcttctttcctgtcttt 138
             |||||||||||||||||| |||||
Sbjct: 82057 ttacatttcttctttcctctcttt 82034



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>gb|AF293848.1| Pyricularia grisea cyclophilin (CYP1) gene, complete cds; nuclear
            gene encoding mitochondrial and cytosolic products
          Length = 2215

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  gcattgatggaggtacaaca 278
            ||||||||||||||||||||
Sbjct: 1034 gcattgatggaggtacaaca 1015



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>gb|BC084984.1| Xenopus laevis hypothetical LOC495457, mRNA (cDNA clone MGC:86540
            IMAGE:3399237), complete cds
          Length = 3383

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 119  atttcttctttcctgtcttt 138
            ||||||||||||||||||||
Sbjct: 2991 atttcttctttcctgtcttt 2972



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>gb|U61059.1|SOU61059 Saguinus oedipus clone 1686.40 T-cell receptor beta (TCRB) mRNA,
           partial cds
          Length = 339

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 tcttctttcctgtctttgcg 141
           ||||||||||||||||||||
Sbjct: 40  tcttctttcctgtctttgcg 21



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>gb|U62993.1|CJU62993 Callithrix jacchus T-cell receptor beta chain mRNA, partial cds
          Length = 399

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 tcttctttcctgtctttgcg 141
           ||||||||||||||||||||
Sbjct: 112 tcttctttcctgtctttgcg 93



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>dbj|AB062672.1| Magnaporthe grisea CYP1 gene for cyclophilin, complete cds
          Length = 1652

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 gcattgatggaggtacaaca 278
           ||||||||||||||||||||
Sbjct: 733 gcattgatggaggtacaaca 714



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>emb|AL672035.7| Mouse DNA sequence from clone RP23-314N8 on chromosome X, complete
             sequence
          Length = 154002

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   atttcttctttcctgtcttt 138
             ||||||||||||||||||||
Sbjct: 25386 atttcttctttcctgtcttt 25367


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,452,834
Number of Sequences: 3902068
Number of extensions: 2452834
Number of successful extensions: 52434
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52374
Number of HSP's gapped (non-prelim): 60
length of query: 325
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 303
effective length of database: 17,147,199,772
effective search space: 5195601530916
effective search space used: 5195601530916
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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