Clone Name | rbastl02f01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 attgatggaggtacaacacaa 281 ||||||||||||||||||||| Sbjct: 12998761 attgatggaggtacaacacaa 12998781
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 attgatggaggtacaacacaa 281 ||||||||||||||||||||| Sbjct: 12953035 attgatggaggtacaacacaa 12953055
>emb|AL731883.4|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148110 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 attgatggaggtacaacacaa 281 ||||||||||||||||||||| Sbjct: 69209 attgatggaggtacaacacaa 69189
>gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, complete sequence Length = 198469 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 catttcttctttcctgtctt 137 |||||||||||||||||||| Sbjct: 56549 catttcttctttcctgtctt 56568
>gb|AC145798.2| Xenopus tropicalis clone CH216-53L7, complete sequence Length = 156486 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gaatgttacatttcttcttt 129 |||||||||||||||||||| Sbjct: 58548 gaatgttacatttcttcttt 58567
>gb|AC149073.2| Sequence of an X. tropicalis BAC clone containing the bambi gene, complete sequence Length = 75688 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gaatgttacatttcttcttt 129 |||||||||||||||||||| Sbjct: 27440 gaatgttacatttcttcttt 27421
>gb|AC162896.3| Mus musculus chromosome 5, clone RP24-318J14, complete sequence Length = 180319 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 catttcttctttcctgtctt 137 |||||||||||||||||||| Sbjct: 123482 catttcttctttcctgtctt 123501
>gb|AC112998.15| Mus musculus chromosome 3, clone RP23-147E7, complete sequence Length = 203273 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 ttacatttcttctttcctgtcttt 138 |||||||||||||||||| ||||| Sbjct: 82057 ttacatttcttctttcctctcttt 82034
>gb|AF293848.1| Pyricularia grisea cyclophilin (CYP1) gene, complete cds; nuclear gene encoding mitochondrial and cytosolic products Length = 2215 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 gcattgatggaggtacaaca 278 |||||||||||||||||||| Sbjct: 1034 gcattgatggaggtacaaca 1015
>gb|BC084984.1| Xenopus laevis hypothetical LOC495457, mRNA (cDNA clone MGC:86540 IMAGE:3399237), complete cds Length = 3383 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 atttcttctttcctgtcttt 138 |||||||||||||||||||| Sbjct: 2991 atttcttctttcctgtcttt 2972
>gb|U61059.1|SOU61059 Saguinus oedipus clone 1686.40 T-cell receptor beta (TCRB) mRNA, partial cds Length = 339 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcttctttcctgtctttgcg 141 |||||||||||||||||||| Sbjct: 40 tcttctttcctgtctttgcg 21
>gb|U62993.1|CJU62993 Callithrix jacchus T-cell receptor beta chain mRNA, partial cds Length = 399 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tcttctttcctgtctttgcg 141 |||||||||||||||||||| Sbjct: 112 tcttctttcctgtctttgcg 93
>dbj|AB062672.1| Magnaporthe grisea CYP1 gene for cyclophilin, complete cds Length = 1652 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 gcattgatggaggtacaaca 278 |||||||||||||||||||| Sbjct: 733 gcattgatggaggtacaaca 714
>emb|AL672035.7| Mouse DNA sequence from clone RP23-314N8 on chromosome X, complete sequence Length = 154002 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 atttcttctttcctgtcttt 138 |||||||||||||||||||| Sbjct: 25386 atttcttctttcctgtcttt 25367 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,452,834 Number of Sequences: 3902068 Number of extensions: 2452834 Number of successful extensions: 52434 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52374 Number of HSP's gapped (non-prelim): 60 length of query: 325 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 303 effective length of database: 17,147,199,772 effective search space: 5195601530916 effective search space used: 5195601530916 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)