ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.2... 33 0.22
2PLSC_YEAST (P33333) Probable 1-acyl-sn-glycerol-3-phosphate acyl... 29 4.2
3YT32_STRFR (P20185) Hypothetical 32.6 kDa protein in transposon ... 28 7.2
4TAF4_DROME (P47825) Transcription initiation factor TFIID subuni... 28 9.4
5LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precur... 28 9.4
6ADHA_CLOAB (Q04944) NADH-dependent butanol dehydrogenase A (EC 1... 28 9.4

>SUBL_ARATH (O65351) Subtilisin-like protease precursor (EC 3.4.21.-)|
           (Cucumisin-like serine protease)
          Length = 757

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = -1

Query: 414 TRTVTNIASDENYTVSCNAPY-GVAVSTAPAQF-FIPSGQKQ--LVTFIVNATMSNSFAS 247
           TRTVT++     Y+V   +   GV +S  PA   F  + +K+   VTF V+++  +   S
Sbjct: 676 TRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNS 735

Query: 246 FGDVEFYGDRGHRVVIPFTV 187
           FG +E + D  H V  P  +
Sbjct: 736 FGSIE-WSDGKHVVGSPVAI 754



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>PLSC_YEAST (P33333) Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase|
           (EC 2.3.1.51) (1-AGP acyltransferase) (1-AGPAT)
           (Lysophosphatidic acid acyltransferase) (LPAAT)
          Length = 303

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 52  GRHASKMYTKQTQLGKSWSFYLQISQVTVPASAFQLSGTLHSLGHDRKWDDHPVPPVPIE 231
           G  A K+  +     K   +   I+  T+P  A + +   H    ++K  + PVP V I 
Sbjct: 228 GEFAEKVRDQMVDTLKEIGYSPAINDTTLPPQAIEYAALQHDKKVNKKIKNEPVPSVSIS 287

Query: 232 LDV 240
            DV
Sbjct: 288 NDV 290



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>YT32_STRFR (P20185) Hypothetical 32.6 kDa protein in transposon Tn4556|
          Length = 305

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -3

Query: 307 RAEAARDIHRECHHE*LFCELRGRRVLWGQGAPGG 203
           R  AAR  H+ CH   L    R R  LW  G  GG
Sbjct: 245 RRAAARVRHQRCHRAGLRSPPRTREPLWSLGPSGG 279



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>TAF4_DROME (P47825) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 110 kDa subunit)
           (p110) (TAFII-110) (110 kDa TBP-associated factor)
          Length = 921

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -1

Query: 420 TITRTVTNIASDENYTVSCNAP--YGVAVSTAPAQFFIPSGQKQLVTFIVNATMSNSFAS 247
           T+T+T+TN +++ N T + N P    + + T PA   + +        IVN+  S+ +A+
Sbjct: 172 TVTQTITNTSNNSNTTSTTNHPTTTQIRLQTVPAAASM-TNTTATSNIIVNSVASSGYAN 230



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>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC|
           1.13.11.12)
          Length = 941

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 106 SFYLQISQVTVPASAFQLSGTLHSLGHDRKWDDHPVPPVPIELDVP 243
           S +L++    + A   +   T+HS  H    DDH V     + DVP
Sbjct: 131 SLFLELVSSELEAKTGKKKATVHSYAHKVDDDDHGVVTYEADFDVP 176



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>ADHA_CLOAB (Q04944) NADH-dependent butanol dehydrogenase A (EC 1.1.1.-) (BDH|
           I)
          Length = 389

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 142 ASAFQLSGTLHSLGHDRKWDDHPV 213
           AS+  ++G L SLG DRKW  HP+
Sbjct: 247 ASSLAINGLL-SLGKDRKWSCHPM 269


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,090,873
Number of Sequences: 219361
Number of extensions: 1161047
Number of successful extensions: 3364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3364
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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