ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl02e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_191405.1| Oryza sativa (japonica cultivar-group), predic... 98 3e-17
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
3dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
4dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
5dbj|AK070376.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 3e-17
6gb|AC107959.8| Homo sapiens chromosome 8, clone RP11-875O11, com... 42 1.5
7emb|AL161736.33| Human DNA sequence from clone RP11-421E17 on ch... 42 1.5
8gb|AC100861.2| Homo sapiens chromosome 8, clone RP11-1149O23, co... 42 1.5
9gb|AC093156.2| Homo sapiens chromosome 1 clone RP11-87O11, compl... 42 1.5
10ref|XM_521401.1| PREDICTED: Pan troglodytes similar to WD-repeat... 40 5.8
11gb|AY673996.1| Gracilaria tenuistipitata var. liui chloroplast, ... 40 5.8
12gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosom... 40 5.8
13ref|NM_014023.3| Homo sapiens WD repeat domain 37 (WDR37), mRNA 40 5.8
14gb|AC112260.6| Mus musculus BAC clone RP23-185L5 from chromosome... 40 5.8
15emb|AL450243.13| Human DNA sequence from clone RP11-567E16 on ch... 40 5.8
16emb|AL049541.24|HSJ991B18 Human DNA sequence from clone RP5-991B... 40 5.8
17emb|AL136827.1|HSM801795 Homo sapiens mRNA; cDNA DKFZp434F2427 (... 40 5.8
18emb|CR860646.1| Pongo pygmaeus mRNA; cDNA DKFZp459A1124 (from cl... 40 5.8
19gb|AC022536.13| Homo sapiens chromosome 10 clone RP11-38M7, comp... 40 5.8
20gb|AC013432.4| Drosophila melanogaster, chromosome X, region 15F... 40 5.8
21ref|XM_688368.1| PREDICTED: Danio rerio similar to CG5558-PA, is... 40 5.8
22emb|BX119979.9| Zebrafish DNA sequence from clone CH211-201G8 in... 40 5.8
23gb|AC012096.8|AC012096 Drosophila melanogaster, chromosome X, re... 40 5.8
24dbj|AB023199.1| Homo sapiens mRNA for KIAA0982 protein, partial cds 40 5.8
25gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 ... 40 5.8
26gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 5.8
27dbj|AB216046.1| Equus caballus DNA, microsatellite TKY2103 40 5.8
28emb|X69871.1|DMFORKEDA D.melanogaster putative f gene 40 5.8

>ref|NM_191405.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2550

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 139/169 (82%)
 Strand = Plus / Minus

                                                                        
Query: 264  tcatggtggcattcacgatgaatgtcacgagctgcttctgcccgctggggatgaagaact 323
            |||||||||| || |||| ||| |||||  ||||| ||||||||||||||||||||||||
Sbjct: 2446 tcatggtggcgttgacgacgaaggtcacctgctgcctctgcccgctggggatgaagaact 2387

                                                                        
Query: 324  gagcgggagccgtggacaccgccactccgtagggggcgttgcaactgacagtgtagttct 383
            | || || | || ||| || || || ||||| |||||| || ||||||| ||||||  ||
Sbjct: 2386 gggccggcgacgcggagacggcgaccccgtaaggggcgctgtaactgaccgtgtagcgct 2327

                                                             
Query: 384  cgtcgctcgcaatgttggtgactgttcgcgttattgttctcgactggtt 432
            |||||||||| | |||||| || ||||  ||||| ||||| ||||||||
Sbjct: 2326 cgtcgctcgccacgttggttacagttcttgttatcgttcttgactggtt 2278



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 139/169 (82%)
 Strand = Plus / Minus

                                                                            
Query: 264      tcatggtggcattcacgatgaatgtcacgagctgcttctgcccgctggggatgaagaact 323
                |||||||||| || |||| ||| |||||  ||||| ||||||||||||||||||||||||
Sbjct: 32449414 tcatggtggcgttgacgacgaaggtcacctgctgcctctgcccgctggggatgaagaact 32449355

                                                                            
Query: 324      gagcgggagccgtggacaccgccactccgtagggggcgttgcaactgacagtgtagttct 383
                | || || | || ||| || || || ||||| |||||| || ||||||| ||||||  ||
Sbjct: 32449354 gggccggcgacgcggagacggcgaccccgtaaggggcgctgtaactgaccgtgtagcgct 32449295

                                                                 
Query: 384      cgtcgctcgcaatgttggtgactgttcgcgttattgttctcgactggtt 432
                |||||||||| | |||||| || ||||  ||||| ||||| ||||||||
Sbjct: 32449294 cgtcgctcgccacgttggttacagttcttgttatcgttcttgactggtt 32449246



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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 139/169 (82%)
 Strand = Plus / Minus

                                                                         
Query: 264   tcatggtggcattcacgatgaatgtcacgagctgcttctgcccgctggggatgaagaact 323
             |||||||||| || |||| ||| |||||  ||||| ||||||||||||||||||||||||
Sbjct: 36935 tcatggtggcgttgacgacgaaggtcacctgctgcctctgcccgctggggatgaagaact 36876

                                                                         
Query: 324   gagcgggagccgtggacaccgccactccgtagggggcgttgcaactgacagtgtagttct 383
             | || || | || ||| || || || ||||| |||||| || ||||||| ||||||  ||
Sbjct: 36875 gggccggcgacgcggagacggcgaccccgtaaggggcgctgtaactgaccgtgtagcgct 36816

                                                              
Query: 384   cgtcgctcgcaatgttggtgactgttcgcgttattgttctcgactggtt 432
             |||||||||| | |||||| || ||||  ||||| ||||| ||||||||
Sbjct: 36815 cgtcgctcgccacgttggttacagttcttgttatcgttcttgactggtt 36767



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>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1143G03
          Length = 137770

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 139/169 (82%)
 Strand = Plus / Minus

                                                                          
Query: 264    tcatggtggcattcacgatgaatgtcacgagctgcttctgcccgctggggatgaagaact 323
              |||||||||| || |||| ||| |||||  ||||| ||||||||||||||||||||||||
Sbjct: 128911 tcatggtggcgttgacgacgaaggtcacctgctgcctctgcccgctggggatgaagaact 128852

                                                                          
Query: 324    gagcgggagccgtggacaccgccactccgtagggggcgttgcaactgacagtgtagttct 383
              | || || | || ||| || || || ||||| |||||| || ||||||| ||||||  ||
Sbjct: 128851 gggccggcgacgcggagacggcgaccccgtaaggggcgctgtaactgaccgtgtagcgct 128792

                                                               
Query: 384    cgtcgctcgcaatgttggtgactgttcgcgttattgttctcgactggtt 432
              |||||||||| | |||||| || ||||  ||||| ||||| ||||||||
Sbjct: 128791 cgtcgctcgccacgttggttacagttcttgttatcgttcttgactggtt 128743



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>dbj|AK070376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050H13, full
            insert sequence
          Length = 3095

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 139/169 (82%)
 Strand = Plus / Minus

                                                                        
Query: 264  tcatggtggcattcacgatgaatgtcacgagctgcttctgcccgctggggatgaagaact 323
            |||||||||| || |||| ||| |||||  ||||| ||||||||||||||||||||||||
Sbjct: 2747 tcatggtggcgttgacgacgaaggtcacctgctgcctctgcccgctggggatgaagaact 2688

                                                                        
Query: 324  gagcgggagccgtggacaccgccactccgtagggggcgttgcaactgacagtgtagttct 383
            | || || | || ||| || || || ||||| |||||| || ||||||| ||||||  ||
Sbjct: 2687 gggccggcgacgcggagacggcgaccccgtaaggggcgctgtaactgaccgtgtagcgct 2628

                                                             
Query: 384  cgtcgctcgcaatgttggtgactgttcgcgttattgttctcgactggtt 432
            |||||||||| | |||||| || ||||  ||||| ||||| ||||||||
Sbjct: 2627 cgtcgctcgccacgttggttacagttcttgttatcgttcttgactggtt 2579



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>gb|AC107959.8| Homo sapiens chromosome 8, clone RP11-875O11, complete sequence
          Length = 211291

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 57     acatgcttcaaaaatgtacac 77
              |||||||||||||||||||||
Sbjct: 170156 acatgcttcaaaaatgtacac 170176



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>emb|AL161736.33| Human DNA sequence from clone RP11-421E17 on chromosome 1 Contains the
             3' end of the FNBP2 gene for formin binding protein 2 and
             a RAP1, GTP-GDP dissociation stimulator 1 (RAP1GDS1)
             pseudogene, complete sequence
          Length = 159474

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 23    taggtaaacagtaactcatctactt 47
             |||| ||||||||||||||||||||
Sbjct: 80768 taggcaaacagtaactcatctactt 80744



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>gb|AC100861.2| Homo sapiens chromosome 8, clone RP11-1149O23, complete sequence
          Length = 164692

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 57     acatgcttcaaaaatgtacac 77
              |||||||||||||||||||||
Sbjct: 120415 acatgcttcaaaaatgtacac 120435



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>gb|AC093156.2| Homo sapiens chromosome 1 clone RP11-87O11, complete sequence
          Length = 198846

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 162    aggaactctacacagccttgg 182
              |||||||||||||||||||||
Sbjct: 168311 aggaactctacacagccttgg 168291



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>ref|XM_521401.1| PREDICTED: Pan troglodytes similar to WD-repeat protein 37
          (LOC465999), mRNA
          Length = 3066

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 1  actgctcgccaaacaaaaca 20
          ||||||||||||||||||||
Sbjct: 28 actgctcgccaaacaaaaca 47



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>gb|AY673996.1| Gracilaria tenuistipitata var. liui chloroplast, complete genome
          Length = 183883

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 64    tcaaaaatgtacaccaaacaaaca 87
             ||||||||||||||||| ||||||
Sbjct: 11153 tcaaaaatgtacaccaatcaaaca 11130



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>gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosome 12, complete sequence
          Length = 177652

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 69     aatgtacaccaaacaaacacaact 92
              |||| |||||||||||||||||||
Sbjct: 122995 aatgaacaccaaacaaacacaact 122972



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>ref|NM_014023.3| Homo sapiens WD repeat domain 37 (WDR37), mRNA
          Length = 4611

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   actgctcgccaaacaaaaca 20
           ||||||||||||||||||||
Sbjct: 201 actgctcgccaaacaaaaca 220



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>gb|AC112260.6| Mus musculus BAC clone RP23-185L5 from chromosome 18, complete sequence
          Length = 216325

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 211    gtgccccctgtccccatagaactc 234
              ||||||||||||||||||| ||||
Sbjct: 179076 gtgccccctgtccccataggactc 179099



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>emb|AL450243.13| Human DNA sequence from clone RP11-567E16 on chromosome 9 Contains a
             novel gene similar to 16.7Kd protein (LOC51142), complete
             sequence
          Length = 65608

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tccaaatcagtcaggtcacc 135
             ||||||||||||||||||||
Sbjct: 48373 tccaaatcagtcaggtcacc 48392



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>emb|AL049541.24|HSJ991B18 Human DNA sequence from clone RP5-991B18 on chromosome 20q13.11-13.3
              Contains a putative novel gene, ESTs, STSs and GSSs,
              complete sequence
          Length = 129874

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 29     aacagtaactcatctactta 48
              ||||||||||||||||||||
Sbjct: 109896 aacagtaactcatctactta 109915



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>emb|AL136827.1|HSM801795 Homo sapiens mRNA; cDNA DKFZp434F2427 (from clone DKFZp434F2427)
          Length = 4490

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   actgctcgccaaacaaaaca 20
           ||||||||||||||||||||
Sbjct: 179 actgctcgccaaacaaaaca 198



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>emb|CR860646.1| Pongo pygmaeus mRNA; cDNA DKFZp459A1124 (from clone DKFZp459A1124)
          Length = 4466

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   actgctcgccaaacaaaaca 20
           ||||||||||||||||||||
Sbjct: 183 actgctcgccaaacaaaaca 202



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>gb|AC022536.13| Homo sapiens chromosome 10 clone RP11-38M7, complete sequence
          Length = 160678

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     actgctcgccaaacaaaaca 20
             ||||||||||||||||||||
Sbjct: 51479 actgctcgccaaacaaaaca 51460



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>gb|AC013432.4| Drosophila melanogaster, chromosome X, region 15F-15F, BAC clone
              BACR01K05, complete sequence
          Length = 162761

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     acagtaactcatctacttac 49
              ||||||||||||||||||||
Sbjct: 139890 acagtaactcatctacttac 139909



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>ref|XM_688368.1| PREDICTED: Danio rerio similar to CG5558-PA, isoform A (LOC565075),
            mRNA
          Length = 1983

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  ggggatgaagaactgagcgg 329
            ||||||||||||||||||||
Sbjct: 1871 ggggatgaagaactgagcgg 1852



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>emb|BX119979.9| Zebrafish DNA sequence from clone CH211-201G8 in linkage group 1,
              complete sequence
          Length = 194023

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    ggggatgaagaactgagcgg 329
              ||||||||||||||||||||
Sbjct: 116114 ggggatgaagaactgagcgg 116133



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>gb|AC012096.8|AC012096 Drosophila melanogaster, chromosome X, region 15E-15F, BAC clone
              BACR18O02, complete sequence
          Length = 177793

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     acagtaactcatctacttac 49
              ||||||||||||||||||||
Sbjct: 111324 acagtaactcatctacttac 111305



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>dbj|AB023199.1| Homo sapiens mRNA for KIAA0982 protein, partial cds
          Length = 4586

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   actgctcgccaaacaaaaca 20
           ||||||||||||||||||||
Sbjct: 172 actgctcgccaaacaaaaca 191



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>gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 of 74 of the complete
             sequence
          Length = 314205

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    acagtaactcatctacttac 49
             ||||||||||||||||||||
Sbjct: 26509 acagtaactcatctacttac 26490



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 44      acttacatggacgacatgct 63
               ||||||||||||||||||||
Sbjct: 1676734 acttacatggacgacatgct 1676715



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>dbj|AB216046.1| Equus caballus DNA, microsatellite TKY2103
          Length = 155

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 74 acaccaaacaaacacaacta 93
          ||||||||||||||||||||
Sbjct: 68 acaccaaacaaacacaacta 87



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>emb|X69871.1|DMFORKEDA D.melanogaster putative f gene
          Length = 19408

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 30  acagtaactcatctacttac 49
           ||||||||||||||||||||
Sbjct: 524 acagtaactcatctacttac 505


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,751,793
Number of Sequences: 3902068
Number of extensions: 3751793
Number of successful extensions: 53752
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53691
Number of HSP's gapped (non-prelim): 61
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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