Clone Name | rbastl02e12 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_191405.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2550 Score = 97.6 bits (49), Expect = 3e-17 Identities = 139/169 (82%) Strand = Plus / Minus Query: 264 tcatggtggcattcacgatgaatgtcacgagctgcttctgcccgctggggatgaagaact 323 |||||||||| || |||| ||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 2446 tcatggtggcgttgacgacgaaggtcacctgctgcctctgcccgctggggatgaagaact 2387 Query: 324 gagcgggagccgtggacaccgccactccgtagggggcgttgcaactgacagtgtagttct 383 | || || | || ||| || || || ||||| |||||| || ||||||| |||||| || Sbjct: 2386 gggccggcgacgcggagacggcgaccccgtaaggggcgctgtaactgaccgtgtagcgct 2327 Query: 384 cgtcgctcgcaatgttggtgactgttcgcgttattgttctcgactggtt 432 |||||||||| | |||||| || |||| ||||| ||||| |||||||| Sbjct: 2326 cgtcgctcgccacgttggttacagttcttgttatcgttcttgactggtt 2278
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 97.6 bits (49), Expect = 3e-17 Identities = 139/169 (82%) Strand = Plus / Minus Query: 264 tcatggtggcattcacgatgaatgtcacgagctgcttctgcccgctggggatgaagaact 323 |||||||||| || |||| ||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 32449414 tcatggtggcgttgacgacgaaggtcacctgctgcctctgcccgctggggatgaagaact 32449355 Query: 324 gagcgggagccgtggacaccgccactccgtagggggcgttgcaactgacagtgtagttct 383 | || || | || ||| || || || ||||| |||||| || ||||||| |||||| || Sbjct: 32449354 gggccggcgacgcggagacggcgaccccgtaaggggcgctgtaactgaccgtgtagcgct 32449295 Query: 384 cgtcgctcgcaatgttggtgactgttcgcgttattgttctcgactggtt 432 |||||||||| | |||||| || |||| ||||| ||||| |||||||| Sbjct: 32449294 cgtcgctcgccacgttggttacagttcttgttatcgttcttgactggtt 32449246
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 97.6 bits (49), Expect = 3e-17 Identities = 139/169 (82%) Strand = Plus / Minus Query: 264 tcatggtggcattcacgatgaatgtcacgagctgcttctgcccgctggggatgaagaact 323 |||||||||| || |||| ||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 36935 tcatggtggcgttgacgacgaaggtcacctgctgcctctgcccgctggggatgaagaact 36876 Query: 324 gagcgggagccgtggacaccgccactccgtagggggcgttgcaactgacagtgtagttct 383 | || || | || ||| || || || ||||| |||||| || ||||||| |||||| || Sbjct: 36875 gggccggcgacgcggagacggcgaccccgtaaggggcgctgtaactgaccgtgtagcgct 36816 Query: 384 cgtcgctcgcaatgttggtgactgttcgcgttattgttctcgactggtt 432 |||||||||| | |||||| || |||| ||||| ||||| |||||||| Sbjct: 36815 cgtcgctcgccacgttggttacagttcttgttatcgttcttgactggtt 36767
>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1143G03 Length = 137770 Score = 97.6 bits (49), Expect = 3e-17 Identities = 139/169 (82%) Strand = Plus / Minus Query: 264 tcatggtggcattcacgatgaatgtcacgagctgcttctgcccgctggggatgaagaact 323 |||||||||| || |||| ||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 128911 tcatggtggcgttgacgacgaaggtcacctgctgcctctgcccgctggggatgaagaact 128852 Query: 324 gagcgggagccgtggacaccgccactccgtagggggcgttgcaactgacagtgtagttct 383 | || || | || ||| || || || ||||| |||||| || ||||||| |||||| || Sbjct: 128851 gggccggcgacgcggagacggcgaccccgtaaggggcgctgtaactgaccgtgtagcgct 128792 Query: 384 cgtcgctcgcaatgttggtgactgttcgcgttattgttctcgactggtt 432 |||||||||| | |||||| || |||| ||||| ||||| |||||||| Sbjct: 128791 cgtcgctcgccacgttggttacagttcttgttatcgttcttgactggtt 128743
>dbj|AK070376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050H13, full insert sequence Length = 3095 Score = 97.6 bits (49), Expect = 3e-17 Identities = 139/169 (82%) Strand = Plus / Minus Query: 264 tcatggtggcattcacgatgaatgtcacgagctgcttctgcccgctggggatgaagaact 323 |||||||||| || |||| ||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 2747 tcatggtggcgttgacgacgaaggtcacctgctgcctctgcccgctggggatgaagaact 2688 Query: 324 gagcgggagccgtggacaccgccactccgtagggggcgttgcaactgacagtgtagttct 383 | || || | || ||| || || || ||||| |||||| || ||||||| |||||| || Sbjct: 2687 gggccggcgacgcggagacggcgaccccgtaaggggcgctgtaactgaccgtgtagcgct 2628 Query: 384 cgtcgctcgcaatgttggtgactgttcgcgttattgttctcgactggtt 432 |||||||||| | |||||| || |||| ||||| ||||| |||||||| Sbjct: 2627 cgtcgctcgccacgttggttacagttcttgttatcgttcttgactggtt 2579
>gb|AC107959.8| Homo sapiens chromosome 8, clone RP11-875O11, complete sequence Length = 211291 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acatgcttcaaaaatgtacac 77 ||||||||||||||||||||| Sbjct: 170156 acatgcttcaaaaatgtacac 170176
>emb|AL161736.33| Human DNA sequence from clone RP11-421E17 on chromosome 1 Contains the 3' end of the FNBP2 gene for formin binding protein 2 and a RAP1, GTP-GDP dissociation stimulator 1 (RAP1GDS1) pseudogene, complete sequence Length = 159474 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 23 taggtaaacagtaactcatctactt 47 |||| |||||||||||||||||||| Sbjct: 80768 taggcaaacagtaactcatctactt 80744
>gb|AC100861.2| Homo sapiens chromosome 8, clone RP11-1149O23, complete sequence Length = 164692 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acatgcttcaaaaatgtacac 77 ||||||||||||||||||||| Sbjct: 120415 acatgcttcaaaaatgtacac 120435
>gb|AC093156.2| Homo sapiens chromosome 1 clone RP11-87O11, complete sequence Length = 198846 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 aggaactctacacagccttgg 182 ||||||||||||||||||||| Sbjct: 168311 aggaactctacacagccttgg 168291
>ref|XM_521401.1| PREDICTED: Pan troglodytes similar to WD-repeat protein 37 (LOC465999), mRNA Length = 3066 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 actgctcgccaaacaaaaca 20 |||||||||||||||||||| Sbjct: 28 actgctcgccaaacaaaaca 47
>gb|AY673996.1| Gracilaria tenuistipitata var. liui chloroplast, complete genome Length = 183883 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 64 tcaaaaatgtacaccaaacaaaca 87 ||||||||||||||||| |||||| Sbjct: 11153 tcaaaaatgtacaccaatcaaaca 11130
>gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosome 12, complete sequence Length = 177652 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 aatgtacaccaaacaaacacaact 92 |||| ||||||||||||||||||| Sbjct: 122995 aatgaacaccaaacaaacacaact 122972
>ref|NM_014023.3| Homo sapiens WD repeat domain 37 (WDR37), mRNA Length = 4611 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 actgctcgccaaacaaaaca 20 |||||||||||||||||||| Sbjct: 201 actgctcgccaaacaaaaca 220
>gb|AC112260.6| Mus musculus BAC clone RP23-185L5 from chromosome 18, complete sequence Length = 216325 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 gtgccccctgtccccatagaactc 234 ||||||||||||||||||| |||| Sbjct: 179076 gtgccccctgtccccataggactc 179099
>emb|AL450243.13| Human DNA sequence from clone RP11-567E16 on chromosome 9 Contains a novel gene similar to 16.7Kd protein (LOC51142), complete sequence Length = 65608 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tccaaatcagtcaggtcacc 135 |||||||||||||||||||| Sbjct: 48373 tccaaatcagtcaggtcacc 48392
>emb|AL049541.24|HSJ991B18 Human DNA sequence from clone RP5-991B18 on chromosome 20q13.11-13.3 Contains a putative novel gene, ESTs, STSs and GSSs, complete sequence Length = 129874 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 aacagtaactcatctactta 48 |||||||||||||||||||| Sbjct: 109896 aacagtaactcatctactta 109915
>emb|AL136827.1|HSM801795 Homo sapiens mRNA; cDNA DKFZp434F2427 (from clone DKFZp434F2427) Length = 4490 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 actgctcgccaaacaaaaca 20 |||||||||||||||||||| Sbjct: 179 actgctcgccaaacaaaaca 198
>emb|CR860646.1| Pongo pygmaeus mRNA; cDNA DKFZp459A1124 (from clone DKFZp459A1124) Length = 4466 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 actgctcgccaaacaaaaca 20 |||||||||||||||||||| Sbjct: 183 actgctcgccaaacaaaaca 202
>gb|AC022536.13| Homo sapiens chromosome 10 clone RP11-38M7, complete sequence Length = 160678 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 actgctcgccaaacaaaaca 20 |||||||||||||||||||| Sbjct: 51479 actgctcgccaaacaaaaca 51460
>gb|AC013432.4| Drosophila melanogaster, chromosome X, region 15F-15F, BAC clone BACR01K05, complete sequence Length = 162761 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 acagtaactcatctacttac 49 |||||||||||||||||||| Sbjct: 139890 acagtaactcatctacttac 139909
>ref|XM_688368.1| PREDICTED: Danio rerio similar to CG5558-PA, isoform A (LOC565075), mRNA Length = 1983 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ggggatgaagaactgagcgg 329 |||||||||||||||||||| Sbjct: 1871 ggggatgaagaactgagcgg 1852
>emb|BX119979.9| Zebrafish DNA sequence from clone CH211-201G8 in linkage group 1, complete sequence Length = 194023 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggggatgaagaactgagcgg 329 |||||||||||||||||||| Sbjct: 116114 ggggatgaagaactgagcgg 116133
>gb|AC012096.8|AC012096 Drosophila melanogaster, chromosome X, region 15E-15F, BAC clone BACR18O02, complete sequence Length = 177793 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 acagtaactcatctacttac 49 |||||||||||||||||||| Sbjct: 111324 acagtaactcatctacttac 111305
>dbj|AB023199.1| Homo sapiens mRNA for KIAA0982 protein, partial cds Length = 4586 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 actgctcgccaaacaaaaca 20 |||||||||||||||||||| Sbjct: 172 actgctcgccaaacaaaaca 191
>gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 of 74 of the complete sequence Length = 314205 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 acagtaactcatctacttac 49 |||||||||||||||||||| Sbjct: 26509 acagtaactcatctacttac 26490
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 acttacatggacgacatgct 63 |||||||||||||||||||| Sbjct: 1676734 acttacatggacgacatgct 1676715
>dbj|AB216046.1| Equus caballus DNA, microsatellite TKY2103 Length = 155 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 acaccaaacaaacacaacta 93 |||||||||||||||||||| Sbjct: 68 acaccaaacaaacacaacta 87
>emb|X69871.1|DMFORKEDA D.melanogaster putative f gene Length = 19408 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 acagtaactcatctacttac 49 |||||||||||||||||||| Sbjct: 524 acagtaactcatctacttac 505 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,751,793 Number of Sequences: 3902068 Number of extensions: 3751793 Number of successful extensions: 53752 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53691 Number of HSP's gapped (non-prelim): 61 length of query: 432 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 410 effective length of database: 17,147,199,772 effective search space: 7030351906520 effective search space used: 7030351906520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)