Clone Name | rbastl02e09 |
---|---|
Clone Library Name | barley_pub |
>gb|AC121811.2| Mus musculus BAC clone RP23-453O15 from 5, complete sequence Length = 190798 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 389 ttctttgaagaattgattgttc 410 |||||||||||||||||||||| Sbjct: 45216 ttctttgaagaattgattgttc 45195
>gb|DQ366717.1| Uncultured Prochlorococcus marinus clone ASNC3046 genomic sequence Length = 33332 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 327 ttatagcttcattctcaattt 347 ||||||||||||||||||||| Sbjct: 17542 ttatagcttcattctcaattt 17522
>gb|AC160562.2| Mus musculus BAC clone RP23-9A12 from chromosome 9, complete sequence Length = 241034 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 aagagttctgtcttgatccat 389 ||||||||||||||||||||| Sbjct: 84007 aagagttctgtcttgatccat 84027
>emb|AL591967.11| Mouse DNA sequence from clone RP23-143E11 on chromosome 2, complete sequence Length = 124280 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 caggattgtgaagagtgggaa 295 ||||||||||||||||||||| Sbjct: 3792 caggattgtgaagagtgggaa 3812
>gb|BC063814.1| Homo sapiens glutamate receptor, ionotropic, kainate 2, mRNA (cDNA clone MGC:74427 IMAGE:6189201), complete cds Length = 2233 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1834 ttgcggtacaaaatacttat 1815
>gb|DQ159934.1| Macaca fascicularis GluR6 (GRIK2) mRNA, complete cds Length = 2729 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1631 ttgcggtacaaaatacttat 1612
>ref|XM_640817.1| Dictyostelium discoideum hypothetical protein (DDB0190208), partial mRNA Length = 9444 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 attctttgaagaattgattg 407 |||||||||||||||||||| Sbjct: 6665 attctttgaagaattgattg 6646
>gb|U23169.2| Caenorhabditis elegans cosmid C29H12, complete sequence Length = 46535 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 aaaagtatttgatggaagag 373 |||||||||||||||||||| Sbjct: 36909 aaaagtatttgatggaagag 36890
>ref|NM_175768.1| Homo sapiens glutamate receptor, ionotropic, kainate 2 (GRIK2), transcript variant 2, mRNA Length = 3409 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1831 ttgcggtacaaaatacttat 1812
>ref|NM_021956.2| Homo sapiens glutamate receptor, ionotropic, kainate 2 (GRIK2), transcript variant 1, mRNA Length = 3322 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1831 ttgcggtacaaaatacttat 1812
>ref|XM_866973.1| PREDICTED: Bos taurus similar to glutamate receptor 6 isoform 1 precursor (LOC615226), partial mRNA Length = 1189 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 680 ttgcggtacaaaatacttat 661
>ref|XM_426186.1| PREDICTED: Gallus gallus similar to glutamate receptor 6 isoform 1 precursor; excitatory amino acid receptor 4 (LOC428628), mRNA Length = 4482 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 2876 ttgcggtacaaaatacttat 2857
>ref|NM_010349.1| Mus musculus glutamate receptor, ionotropic, kainate 2 (beta 2) (Grik2), mRNA Length = 3109 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1781 ttgcggtacaaaatacttat 1762
>gb|AC149481.1| Populus trichocarpa clone Pop1-16J18, complete sequence Length = 120131 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 tctgttttgcggtacaaaat 267 |||||||||||||||||||| Sbjct: 7102 tctgttttgcggtacaaaat 7121
>gb|AC149541.1| Populus trichocarpa clone Pop1-12C14, complete sequence Length = 88772 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 tctgttttgcggtacaaaat 267 |||||||||||||||||||| Sbjct: 21794 tctgttttgcggtacaaaat 21813
>ref|NM_019309.1| Rattus norvegicus glutamate receptor, ionotropic, kainate 2 (Grik2), mRNA Length = 4554 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1931 ttgcggtacaaaatacttat 1912
>gb|AY524769.1| Canis familiaris ionotropic kainate 2 (Grik2) mRNA, partial sequence Length = 731 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 347 ttgcggtacaaaatacttat 328
>ref|XM_539059.2| PREDICTED: Canis familiaris similar to glutamate receptor 6 isoform 1 precursor (LOC481938), mRNA Length = 2803 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1601 ttgcggtacaaaatacttat 1582
>emb|Z11548.1|RNGLUR6MR R.norvegicus cDNA for glutamate receptor subunit (GluR6), kainate subtype Length = 4554 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1931 ttgcggtacaaaatacttat 1912
>emb|Z11715.1|RNGLUR6 R.norvegicus mRNA for kainate receptor Length = 2839 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1709 ttgcggtacaaaatacttat 1690
>emb|X66117.1|MMGLUR6C M.musculus mRNA for glutamate receptor subunit GluR6-2 Length = 3109 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1781 ttgcggtacaaaatacttat 1762
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57 Length = 199577 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tacttatacaggattgtgaa 286 |||||||||||||||||||| Sbjct: 93188 tacttatacaggattgtgaa 93169
>emb|AL033545.2|ATF7K2 Arabidopsis thaliana DNA chromosome 4, BAC clone F7K2 (ESSA project) Length = 106702 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 tacttatacaggattgtgaa 286 |||||||||||||||||||| Sbjct: 44380 tacttatacaggattgtgaa 44361
>emb|AJ301610.1|HSA301610 Homo sapiens mRNA for GluR6 kainate receptor (GRIK2 gene), isoform-b Length = 2692 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1631 ttgcggtacaaaatacttat 1612
>emb|AJ301609.1|HSA301609 Homo sapiens partial mRNA for GluR6 kainate receptor (GRIK2 gene), exons 10, 11 and 13 Length = 235 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 111 ttgcggtacaaaatacttat 92
>emb|AJ301608.1|HSA301608 Homo sapiens partial mRNA for GluR6 kainate receptor (GRIK2 gene), exons 11, 13 and 14 Length = 351 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 107 ttgcggtacaaaatacttat 88
>emb|AJ252246.1|HSA252246 Homo sapiens mRNA for kainate receptor subunit (GRIK2 gene) Length = 2859 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1631 ttgcggtacaaaatacttat 1612
>emb|BX927332.8| Zebrafish DNA sequence from clone CH211-263M18 in linkage group 21, complete sequence Length = 90206 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 agttctgtcttgatccattc 391 |||||||||||||||||||| Sbjct: 82306 agttctgtcttgatccattc 82287
>gb|AC154397.8| Mus musculus chromosome 7, clone RP23-53N23, complete sequence Length = 273314 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 aggattgtgaagagtgggaa 295 |||||||||||||||||||| Sbjct: 185386 aggattgtgaagagtgggaa 185405
>emb|AL645667.14| Mouse DNA sequence from clone RP23-316N16 on chromosome 13 contains the vomeronasal receptor 1 H1 pseudogene V1rh1, the V1rh3, V1ri4, V1ri7 and V1rh11 genes for vomeronasal receptors 1 H3, I4, I7 and H11, three vomeronasal receptors 1 H pseudogenes, a vomeronasal receptor 1 I pseudogene, an ABC transporter pseudogene, the gene for a novel vomeronasal receptor 1, I family member, a novel gene and two CpG islands, complete sequence Length = 179902 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 tatgatataccccaaaatta 329 |||||||||||||||||||| Sbjct: 17455 tatgatataccccaaaatta 17474
>gb|AC012014.20| Homo sapiens 3 BAC RP11-255N4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 199523 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gtacttacaaccaaaccata 58 |||||||||||||||||||| Sbjct: 120378 gtacttacaaccaaaccata 120397
>ref|XM_579430.1| PREDICTED: Rattus norvegicus glutamate receptor, ionotropic, kainate 2 (Grik2), mRNA Length = 4137 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1516 ttgcggtacaaaatacttat 1497
>gb|AF149015.1|AF149015 Pneumocystis carinii f. sp. ratti major surface glycoprotein R7a (R7a) gene, partial cds; and major surface glycoprotein R7b (R7b) gene, partial cds Length = 3459 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 tccattctttgaagaattga 404 |||||||||||||||||||| Sbjct: 2979 tccattctttgaagaattga 2998
>dbj|AP006197.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-360J22, complete sequence Length = 159320 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 127467 ttgcggtacaaaatacttat 127448
>emb|AL844511.14| Mouse DNA sequence from clone RP23-244B6 on chromosome 2, complete sequence Length = 144077 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 tatgatataccccaaaatta 329 |||||||||||||||||||| Sbjct: 55379 tatgatataccccaaaatta 55360
>gb|U16126.1|HSU16126 Human glutamate/kainate receptor subunit (EAA4) mRNA, complete cds Length = 2727 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1631 ttgcggtacaaaatacttat 1612
>emb|AL132975.1|ATT22E16 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16 Length = 103240 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 ccattctttgaagaattgat 405 |||||||||||||||||||| Sbjct: 54355 ccattctttgaagaattgat 54374
>emb|AL359174.14| Human DNA sequence from clone RP11-423D17 on chromosome 6, complete sequence Length = 146372 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 84626 ttgcggtacaaaatacttat 84607
>gb|AC153953.2| Mus musculus 10 BAC RP24-394B11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163098 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 35294 ttgcggtacaaaatacttat 35313
>dbj|D10054.1| Mus musculus mRNA for glutamate receptor channel subunit beta-2, complete cds Length = 2993 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 1957 ttgcggtacaaaatacttat 1938
>dbj|AP002530.2| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section 3/4 Length = 300000 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 60654 ttgcggtacaaaatacttat 60635
>dbj|AB041512.1| Homo sapiens genomic DNA, chromosome 6q21, clone:520L4, complete sequence Length = 102910 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 ttgcggtacaaaatacttat 273 |||||||||||||||||||| Sbjct: 80637 ttgcggtacaaaatacttat 80618 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,864,254 Number of Sequences: 3902068 Number of extensions: 3864254 Number of successful extensions: 109608 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109551 Number of HSP's gapped (non-prelim): 57 length of query: 413 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 391 effective length of database: 17,147,199,772 effective search space: 6704555110852 effective search space used: 6704555110852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)