ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02e07 |
|---|---|
| Clone Library Name | barley_pub |
>POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1427 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 7/74 (9%) Frame = +3 Query: 90 PHATVLKVPTATS-------RSKTFVTANKQYNTTSKGFTRTNGMEVARWKCGNCKGCNH 248 P AT+ ++ TA +++ A Q TS R N R KC NC H Sbjct: 334 PGATLEEMMTACQGVGGPGHKARVLAEAMSQVQQTSIMMQRGNFRGPRRIKCFNCGKEGH 393 Query: 249 FLSRCGRKKRRGTW 290 C +++G W Sbjct: 394 LAKNCRAPRKKGCW 407
>GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 492 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 7/74 (9%) Frame = +3 Query: 90 PHATVLKVPTATS-------RSKTFVTANKQYNTTSKGFTRTNGMEVARWKCGNCKGCNH 248 P AT+ ++ TA +++ A Q TS R N R KC NC H Sbjct: 334 PGATLEEMMTACQGVGGPGHKARVLAEAMSQVQQTSIMMQRGNFRGPRRIKCFNCGKEGH 393 Query: 249 FLSRCGRKKRRGTW 290 C +++G W Sbjct: 394 LAKNCRAPRKKGCW 407
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/25 (48%), Positives = 12/25 (48%) Frame = -3 Query: 146 HKRFAPACCCWNLKDCSMGCLSYLC 72 H P C C N KDC GC S C Sbjct: 1357 HTDSGPRCFCLNPKDCESGCASNPC 1381
>PGLR_TOBAC (Q05967) Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase)| Length = 396 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Frame = +3 Query: 105 LKVPTATSRSKT--FVTANKQYNTTSKGFTRTNGMEVARWKCGNCKGCN 245 LK P+ S+ K ++T NK T G +G A W+C K CN Sbjct: 90 LKAPSDPSQLKVGEWLTVNKLDQFTMSGGGILDGQAAAAWECKQSKKCN 138
>ATL1E_ARATH (Q9C7E9) Putative RING-H2 finger protein ATL1E| Length = 336 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%) Frame = +3 Query: 156 KQYNTTSKGFTRTN--GMEVARWKCGNCKGCNHFLSRCGRKKR 278 K T KGF+ G + W NC+GC RCG K + Sbjct: 163 KDVITEEKGFSTVPWLGNVLLEWSSPNCRGCEKESLRCGFKNK 205
>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/25 (48%), Positives = 12/25 (48%) Frame = -3 Query: 146 HKRFAPACCCWNLKDCSMGCLSYLC 72 H P C C N KDC GC S C Sbjct: 1359 HTASGPHCFCPNHKDCESGCASNPC 1383
>SYTL4_HUMAN (Q96C24) Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)| Length = 671 Score = 29.3 bits (64), Expect = 2.6 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%) Frame = +3 Query: 219 KCGNCKGCNHFLSR-CGRKKRRGTW 290 K C+GCNH + R C ++ GTW Sbjct: 76 KTNTCRGCNHLVCRDCRIQESNGTW 100
>DPF1_HUMAN (Q92782) Zinc-finger protein neuro-d4 (D4, zinc and double PHD| fingers family 1) Length = 353 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = +3 Query: 192 TNGMEVARWKCGNCKGCNHFLSRCGRKKRRG-TWSGI 299 T + RW+C CK C S CG + G +W+G+ Sbjct: 268 TAAVRTYRWQCIECKSC----SLCGTSENDGASWAGL 300
>YS41_CAEEL (Q09370) Hypothetical protein ZK177.1| Length = 460 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Frame = +3 Query: 84 QTPHATVLKVPTATSRSKTFVTANKQYNT-TSKGFTRTNGMEV 209 Q P VL KT + N+ YN SKGF NG E+ Sbjct: 156 QRPAGCVLPSIDCLLHDKTTYSGNRDYNNENSKGFAEANGHEI 198
>WDR8_HUMAN (Q9P2S5) WD-repeat protein 8| Length = 460 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Frame = -3 Query: 173 GCVVLLVSGHKRFAPACCCWNLKDCSMGCLS--YLCTMCMECQ 51 GC+ + V G FA CW+L SM LS + C +E + Sbjct: 404 GCMSVQVPGEGDFAVLSLCWHLSGDSMALLSKDHFCLCFLETE 446
>GLYA_THICR (Q31FS6) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 423 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Frame = +3 Query: 93 HATVLKVPTATSRSKTFVTANKQYNT---TSKGFTRTNGMEVARWKCGNCKGC 242 H T+ K FVT+ + T T++GFT + +A W C C Sbjct: 341 HITINKNSVPNDPMSPFVTSGIRVGTAASTTRGFTEEDSKNLASWMCDVIDSC 393
>DPF1_RAT (P56163) Zinc-finger protein neuro-d4 (D4, zinc and double PHD| fingers family 1) Length = 397 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = +3 Query: 192 TNGMEVARWKCGNCKGCNHFLSRCGRKKRRG-TWSGI 299 T + RW+C CK C S CG + G +W+G+ Sbjct: 312 TAAVRTYRWQCIECKSC----SLCGTSENDGASWAGL 344
>BENK_ACIAD (O30513) Benzoate transport protein| Length = 466 Score = 27.7 bits (60), Expect = 7.5 Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 2/24 (8%) Frame = -1 Query: 256 LRKWLHPLQLPHFH--LATSIPLV 191 L WL LQLPHF+ LA SIP V Sbjct: 403 LTGWLLSLQLPHFYNFLALSIPAV 426
>Y004_MYCSM (Q50434) UPF0232 protein in recF-gyrB intergenic region| Length = 194 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +3 Query: 174 SKGFTRTNGMEVARWKCGNCKGCNHFLSRCGRKKRRGTWSG 296 ++G R+ G +V R + G + R G +RR TWSG Sbjct: 39 ARGAARSQGKDVGRGRSGPAR-------RVGGNRRRRTWSG 72
>WDR8_MOUSE (Q9JM98) WD-repeat protein 8| Length = 462 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = -3 Query: 173 GCVVLLVSGHKRFAPACCCWNLKDCSMGCLS--YLCTMCME 57 GCV + V G FA CW+L S+ LS + C +E Sbjct: 404 GCVSVQVPGEGDFAVLGLCWHLSGDSLALLSKDHFCLCFLE 444
>GLYA2_PSEU2 (Q4ZM83) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine| methylase 2) (SHMT 2) Length = 417 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +3 Query: 93 HATVLKVPTATSRSKTFVTANKQYNT---TSKGFTRTNGMEVARWKC 224 H TV K FVT+ + T T++GF T +E+A W C Sbjct: 341 HITVNKNSVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCVELAGWIC 387
>GLYA2_PSE14 (Q48CP3) Serine hydroxymethyltransferase 2 (EC 2.1.2.1) (Serine| methylase 2) (SHMT 2) Length = 417 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +3 Query: 93 HATVLKVPTATSRSKTFVTANKQYNT---TSKGFTRTNGMEVARWKC 224 H TV K FVT+ + T T++GF T +E+A W C Sbjct: 341 HITVNKNSVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCVELAGWIC 387
>GLYA1_PSESM (Q88AD1) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 417 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +3 Query: 93 HATVLKVPTATSRSKTFVTANKQYNT---TSKGFTRTNGMEVARWKC 224 H TV K FVT+ + T T++GF T +E+A W C Sbjct: 341 HITVNKNSVPNDPQSPFVTSGLRIGTPAVTTRGFKVTQCIELAGWIC 387
>YZR3_ARATH (Q8GZ43) RanBP2-type zinc-finger protein At1g67325| Length = 288 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +3 Query: 159 QYNTTSKGFTRTNGMEVARWKCGNCKGCNH-FLSRCGRK 272 Q +S ++ N E WKC NC N+ F S+C R+ Sbjct: 227 QQGGSSDKISKQNAPE-GSWKCDNCGNINYPFRSKCNRQ 264
>SPRL_STRP6 (Q5XD73) Protein sprT-like| Length = 145 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = +3 Query: 111 VPTATSRSKTFVTANKQYNTTSKG--FTRTNGMEVARWKCGNCKG 239 VPT+ S+SKT N Y+ + G + R + +A++ CGNC G Sbjct: 98 VPTS-SKSKT----NHHYSCQTCGQVYQRKRRINLAKYVCGNCHG 137
>SPRL_STRP3 (Q8K886) Protein sprT-like| Length = 145 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = +3 Query: 111 VPTATSRSKTFVTANKQYNTTSKG--FTRTNGMEVARWKCGNCKG 239 VPT+ S+SKT N Y+ + G + R + +A++ CGNC G Sbjct: 98 VPTS-SKSKT----NHHYSCQTCGQVYQRKRRINLAKYVCGNCHG 137
>SPRL_STRP1 (Q9A0W7) Protein sprT-like| Length = 145 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = +3 Query: 111 VPTATSRSKTFVTANKQYNTTSKG--FTRTNGMEVARWKCGNCKG 239 VPT+ S+SKT N Y+ + G + R + +A++ CGNC G Sbjct: 98 VPTS-SKSKT----NHHYSCQTCGQVYQRKRRINLAKYVCGNCHG 137 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,036,012 Number of Sequences: 219361 Number of extensions: 808236 Number of successful extensions: 2442 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2390 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2436 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
