Clone Name | rbastl02e06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC119875.7| Mus musculus chromosome 1, clone RP24-291C20, complete sequence Length = 162379 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 cagcactgcttcaatttgctt 430 ||||||||||||||||||||| Sbjct: 64971 cagcactgcttcaatttgctt 64951
>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6 through 10 and partial cds Length = 688489 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 gagatacacacatacacagag 170 ||||||||||||||||||||| Sbjct: 626182 gagatacacacatacacagag 626202
>gb|AC006525.1| Homo sapiens chromosome 5 clone RP1-4O17, complete sequence Length = 90604 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 gagatacacacatacacagag 170 ||||||||||||||||||||| Sbjct: 45780 gagatacacacatacacagag 45800
>gb|AC159306.2| Mus musculus BAC clone RP23-206B2 from chromosome 14, complete sequence Length = 194660 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 gagatacacacatacacagag 170 ||||||||||||||||||||| Sbjct: 128984 gagatacacacatacacagag 129004
>gb|AC161574.8| Mus musculus chromosome 1, clone RP23-352D14, complete sequence Length = 187614 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 143 acagcctgagatacacacatacacagag 170 |||| ||||||||| ||||||||||||| Sbjct: 169501 acagactgagatacgcacatacacagag 169528
>gb|AC123618.26| Mus musculus chromosome 12, clone RP23-38N23, complete sequence Length = 201596 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gccaaacttttcaatgaaat 35 |||||||||||||||||||| Sbjct: 113211 gccaaacttttcaatgaaat 113192
>gb|AC079290.12| Mus musculus chromosome 18, clone RP23-330E13, complete sequence Length = 202255 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 agatacacacatacacagag 170 |||||||||||||||||||| Sbjct: 126383 agatacacacatacacagag 126364
>gb|AC120237.5| Rattus norvegicus 1 BAC CH230-453N3 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 150760 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ggctcaaaaaatacaaacta 230 |||||||||||||||||||| Sbjct: 126642 ggctcaaaaaatacaaacta 126623
>gb|AC127415.3| Mus musculus BAC clone RP23-450L4 from chromosome 19, complete sequence Length = 177302 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 agatacacacatacacagag 170 |||||||||||||||||||| Sbjct: 33435 agatacacacatacacagag 33454
>gb|AC155230.2| Mus musculus BAC clone RP24-335J14 from chromosome 12, complete sequence Length = 135049 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 agatacacacatacacagag 170 |||||||||||||||||||| Sbjct: 5375 agatacacacatacacagag 5356
>emb|BX571802.15| Zebrafish DNA sequence from clone CH211-197A16 in linkage group 10, complete sequence Length = 196999 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gagatacacacatacacaga 169 |||||||||||||||||||| Sbjct: 97659 gagatacacacatacacaga 97678 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gagatacacacatacacaga 169 |||||||||||||||||||| Sbjct: 96835 gagatacacacatacacaga 96854
>gb|AC134331.2| Mus musculus BAC clone RP24-344O12 from chromosome 19, complete sequence Length = 155342 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 agatacacacatacacagag 170 |||||||||||||||||||| Sbjct: 6740 agatacacacatacacagag 6721
>gb|AC132452.3| Mus musculus BAC clone RP23-195K10 from chromosome 19, complete sequence Length = 218688 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gagatacacacatacacaga 169 |||||||||||||||||||| Sbjct: 95129 gagatacacacatacacaga 95148
>gb|AC099668.2| Homo sapiens chromosome 3 clone RP11-901L6, complete sequence Length = 242222 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 ctcaaaaaatacaaactact 232 |||||||||||||||||||| Sbjct: 228367 ctcaaaaaatacaaactact 228386
>gb|AC121810.3| Mus musculus BAC clone RP23-453G13 from chromosome 1, complete sequence Length = 208102 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gtgaaaacaagccacgcaac 289 |||||||||||||||||||| Sbjct: 111679 gtgaaaacaagccacgcaac 111660
>emb|CR392021.10| Zebrafish DNA sequence from clone CH211-126H20 in linkage group 5, complete sequence Length = 182008 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tttaaaaccaagggactaca 145 |||||||||||||||||||| Sbjct: 137817 tttaaaaccaagggactaca 137836
>gb|BC065663.1| Danio rerio VAMP (vesicle-associated membrane protein)-associated protein A, mRNA (cDNA clone MGC:77382 IMAGE:6969291), complete cds Length = 1950 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 ctgagatacacacatacacagagc 171 |||||||||||| ||||||||||| Sbjct: 1252 ctgagatacacaaatacacagagc 1275
>gb|AC104452.2| Homo sapiens chromosome 3 clone RP11-949J7, complete sequence Length = 186563 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 ctcaaaaaatacaaactact 232 |||||||||||||||||||| Sbjct: 59551 ctcaaaaaatacaaactact 59570
>ref|NM_199918.2| Danio rerio VAMP (vesicle-associated membrane protein)-associated protein A (vapa), mRNA Length = 1950 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 ctgagatacacacatacacagagc 171 |||||||||||| ||||||||||| Sbjct: 1252 ctgagatacacaaatacacagagc 1275
>gb|AC090138.5| Homo sapiens, clone RP11-63C8, complete sequence Length = 189231 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 aaacttttcaatgaaataca 38 |||||||||||||||||||| Sbjct: 124019 aaacttttcaatgaaataca 124000
>gb|AC154351.2| Mus musculus BAC clone RP24-536C5 from chromosome 17, complete sequence Length = 188013 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gagatacacacatacacaga 169 |||||||||||||||||||| Sbjct: 64610 gagatacacacatacacaga 64591
>gb|AC159880.2| Mus musculus BAC clone RP24-490L14 from chromosome 9, complete sequence Length = 142451 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 agatacacacatacacagag 170 |||||||||||||||||||| Sbjct: 120796 agatacacacatacacagag 120815
>gb|AC016845.14| Homo sapiens chromosome 11, clone RP11-5E23, complete sequence Length = 167727 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aaacttttcaatgaaataca 38 |||||||||||||||||||| Sbjct: 126688 aaacttttcaatgaaataca 126707
>emb|AL935290.10| Zebrafish DNA sequence from clone CH211-270H11, complete sequence Length = 129665 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gagatacacacatacacaga 169 |||||||||||||||||||| Sbjct: 115510 gagatacacacatacacaga 115491
>gb|AC107787.14| Mus musculus chromosome 1, clone RP23-432F10, complete sequence Length = 212943 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 143 acagcctgagatacacacatacacagag 170 |||| ||||||||| ||||||||||||| Sbjct: 190384 acagactgagatacgcacatacacagag 190357
>gb|AC105165.11| Mus musculus chromosome 18, clone RP24-302C24, complete sequence Length = 186431 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 agatacacacatacacagag 170 |||||||||||||||||||| Sbjct: 152294 agatacacacatacacagag 152313
>emb|CR974423.21| Mouse DNA sequence from clone RP23-182F9 on chromosome 12, complete sequence Length = 238441 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gccaaacttttcaatgaaat 35 |||||||||||||||||||| Sbjct: 65820 gccaaacttttcaatgaaat 65801
>emb|CT030001.16| Mouse DNA sequence from clone RP23-225D15 on chromosome 17, complete sequence Length = 180961 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gagatacacacatacacaga 169 |||||||||||||||||||| Sbjct: 153801 gagatacacacatacacaga 153820
>emb|CT025619.9| Mouse DNA sequence from clone RP23-442M18 on chromosome 9, complete sequence Length = 193329 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 agatacacacatacacagag 170 |||||||||||||||||||| Sbjct: 145397 agatacacacatacacagag 145416
>gb|AC173483.1| Mus musculus BAC clone RP23-281C13 from chromosome 12, complete sequence Length = 182922 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 agatacacacatacacagag 170 |||||||||||||||||||| Sbjct: 19553 agatacacacatacacagag 19572 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,196,141 Number of Sequences: 3902068 Number of extensions: 5196141 Number of successful extensions: 125971 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125853 Number of HSP's gapped (non-prelim): 118 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)