Clone Name | rbastl02e02 |
---|---|
Clone Library Name | barley_pub |
>gb|AC007807.8|AC007807 Drosophila melanogaster, chromosome 3R, region 89E-89E, BAC clone BACR01E04, complete sequence Length = 172674 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 37 aataaaacaagagcgcattttgtttctcttt 67 ||||||||||||| ||||||| ||||||||| Sbjct: 104407 aataaaacaagagagcattttctttctcttt 104437
>gb|AC007824.5|AC007824 Drosophila melanogaster, chromosome 3R, region 89E-90A, BAC clone BACR02L16, complete sequence Length = 190866 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 37 aataaaacaagagcgcattttgtttctcttt 67 ||||||||||||| ||||||| ||||||||| Sbjct: 44937 aataaaacaagagagcattttctttctcttt 44967
>gb|AF183178.1|AF183178S1 Drosophila melanogaster filamin isoforms A and B (Filamin) gene, exons 1 and 2 Length = 5153 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 37 aataaaacaagagcgcattttgtttctcttt 67 ||||||||||||| ||||||| ||||||||| Sbjct: 1587 aataaaacaagagagcattttctttctcttt 1557
>gb|AE003716.5| Drosophila melanogaster chromosome 3R, section 54 of 118 of the complete sequence Length = 220035 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 37 aataaaacaagagcgcattttgtttctcttt 67 ||||||||||||| ||||||| ||||||||| Sbjct: 90982 aataaaacaagagagcattttctttctcttt 91012
>gb|AC066595.5| Homo sapiens chromosome 3 clone RP11-385A18 map 3p, complete sequence Length = 172123 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 cctcttctctacctccctgct 207 ||||||||||||||||||||| Sbjct: 38534 cctcttctctacctccctgct 38514
>gb|AC026187.4| Homo sapiens chromosome 3 clone RP11-306H5 map 3p, complete sequence Length = 184087 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 cctcttctctacctccctgct 207 ||||||||||||||||||||| Sbjct: 163662 cctcttctctacctccctgct 163642
>gb|AC132366.4| Mus musculus BAC clone RP23-461N12 from chromosome 7, complete sequence Length = 183964 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 tgtggatgaagaagaacacg 305 |||||||||||||||||||| Sbjct: 44091 tgtggatgaagaagaacacg 44110
>gb|AC122047.4| Mus musculus BAC clone RP24-456A9 from chromosome 2, complete sequence Length = 172110 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 gtgtgcagccgagcattttt 142 |||||||||||||||||||| Sbjct: 110194 gtgtgcagccgagcattttt 110213
>emb|AL161772.17| Human DNA sequence from clone RP11-172H24 on chromosome 13 Contains the 3' end of the gene for polycystic kidney disease, autosomal recessive (Probe hTg737) (TG737), a novel pseudogene (FLJ124251 and FLJ14793), the 5' end of the IL17D gene for interleukin 17D and a CpG island, complete sequence Length = 125579 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cctcttctctacctccctgc 206 |||||||||||||||||||| Sbjct: 90700 cctcttctctacctccctgc 90681
>gb|AC158365.2| Mus musculus BAC clone RP23-182N12 from chromosome 12, complete sequence Length = 220129 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 aatctatcaatgtgtgcagc 131 |||||||||||||||||||| Sbjct: 102824 aatctatcaatgtgtgcagc 102805
>emb|AL670399.4| Mouse DNA sequence from clone RP23-263M10 on chromosome 11 Contains the 3' end of the Atp2a3 gene for ubiquitous Ca++ transporting ATPase, the P2rx1 and P2rx5 genes for purinergic receptor P2X ligand-gated ion channel 1 and 5, 111 novel genes, the Camkk1 gene for calcium/calmodulin-dependent protein kinase kinase 1 alpha, the Itgae gene for epithelial-associated integrin alpha E, the Gsg2 gene for germ cell-specific gene 2 protein, the gene for a novel protein similar to human tax interacting protein 1, the Ctns gene for nephropathic cystinosis protein and five CpG islands, complete sequence Length = 224037 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 ttcctccacagcagcctctt 192 |||||||||||||||||||| Sbjct: 30251 ttcctccacagcagcctctt 30270
>gb|AC104441.2| Homo sapiens chromosome 3 clone RP11-901H12, complete sequence Length = 177320 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 gcctcttctctacctccctgctgt 209 ||||||||||||||| |||||||| Sbjct: 9422 gcctcttctctacctgcctgctgt 9445
>gb|AC104183.2| Homo sapiens chromosome 3 clone RP11-180N14, complete sequence Length = 169709 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 gcctcttctctacctccctgctgt 209 ||||||||||||||| |||||||| Sbjct: 3166 gcctcttctctacctgcctgctgt 3143
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cagcctcttctctacctccc 203 |||||||||||||||||||| Sbjct: 1793550 cagcctcttctctacctccc 1793569
>gb|AC007756.5|AC007756 Drosophila melanogaster, chromosome 3R, region 92E-92E, BAC clone BACR10P06, complete sequence Length = 170105 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gagcacatgcatcaacctca 98 |||||||||||||||||||| Sbjct: 95042 gagcacatgcatcaacctca 95023
>gb|AC007757.5|AC007757 Drosophila melanogaster, chromosome 3R, region 92E-92F, BAC clone BACR13J19, complete sequence Length = 170939 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gagcacatgcatcaacctca 98 |||||||||||||||||||| Sbjct: 11845 gagcacatgcatcaacctca 11826
>gb|AC069019.8|AC069019 Mus musculus BAC RP23-455N13 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 196175 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cagcctcttctctacctccc 203 |||||||||||||||||||| Sbjct: 77651 cagcctcttctctacctccc 77670
>gb|AC013430.5|AC013430 Genomic sequence for Arabidopsis thaliana BAC F3F9 from chromosome I, complete sequence Length = 95769 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 gcgctgtggatgaagaagaa 301 |||||||||||||||||||| Sbjct: 54414 gcgctgtggatgaagaagaa 54395
>gb|AE003730.3| Drosophila melanogaster chromosome 3R, section 68 of 118 of the complete sequence Length = 221402 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gagcacatgcatcaacctca 98 |||||||||||||||||||| Sbjct: 187426 gagcacatgcatcaacctca 187407
>emb|AL137230.3|CNS01DWL Human chromosome 14 DNA sequence BAC R-944C7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197284 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 atgaagaagaacacgaggtt 310 |||||||||||||||||||| Sbjct: 80880 atgaagaagaacacgaggtt 80861
>emb|BX284626.3| Mouse DNA sequence from clone RP23-76P19 on chromosome 11, complete sequence Length = 182810 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cagcctcttctctacctccc 203 |||||||||||||||||||| Sbjct: 137447 cagcctcttctctacctccc 137428
>gb|AC147717.1| Gallus gallus BAC clone CH261-5M18 from chromosome unknown, complete sequence Length = 189841 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 294 aagaagaacacgaggttgtttctcatgc 321 |||||||| ||||||||||||| ||||| Sbjct: 115955 aagaagaaaacgaggttgtttcccatgc 115928
>emb|AL928635.5| Mouse DNA sequence from clone RP23-410E7 on chromosome 2, complete sequence Length = 175392 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 gtgtgcagccgagcattttt 142 |||||||||||||||||||| Sbjct: 114413 gtgtgcagccgagcattttt 114394 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,108,166 Number of Sequences: 3902068 Number of extensions: 4108166 Number of successful extensions: 93835 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93761 Number of HSP's gapped (non-prelim): 74 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)