Clone Name | rbastl02d12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 184 bits (93), Expect = 2e-43 Identities = 201/237 (84%) Strand = Plus / Minus Query: 235 gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 294 ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 3343074 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 3343015 Query: 295 ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 354 |||| || ||||| ||||| | ||||| |||||||||||||||||||| ||||||||| Sbjct: 3343014 gcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctccttg 3342955 Query: 355 aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 414 ||||| | | ||||||||| | ||||||||||| |||||||| | |||||||||||| Sbjct: 3342954 tacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcacttg 3342895 Query: 415 atgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactgggggcttc 471 || || || |||||||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct: 3342894 atattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttc 3342838 Score = 176 bits (89), Expect = 4e-41 Identities = 200/237 (84%) Strand = Plus / Minus Query: 235 gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 294 ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| || Sbjct: 3351809 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 3351750 Query: 295 ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 354 |||| || ||||| ||||| | ||||| |||||||| ||||||||||||||||||||| Sbjct: 3351749 gcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctccttg 3351690 Query: 355 aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 414 ||||||| | ||||||||| | |||||||| || |||||||| | |||||||||||| Sbjct: 3351689 tacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgcacttg 3351630 Query: 415 atgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactgggggcttc 471 || || || |||||||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct: 3351629 atattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttc 3351573
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 184 bits (93), Expect = 2e-43 Identities = 201/237 (84%) Strand = Plus / Minus Query: 235 gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 294 ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 3343019 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 3342960 Query: 295 ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 354 |||| || ||||| ||||| | ||||| |||||||||||||||||||| ||||||||| Sbjct: 3342959 gcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctccttg 3342900 Query: 355 aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 414 ||||| | | ||||||||| | ||||||||||| |||||||| | |||||||||||| Sbjct: 3342899 tacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcacttg 3342840 Query: 415 atgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactgggggcttc 471 || || || |||||||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct: 3342839 atattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttc 3342783 Score = 176 bits (89), Expect = 4e-41 Identities = 200/237 (84%) Strand = Plus / Minus Query: 235 gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 294 ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| || Sbjct: 3351754 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 3351695 Query: 295 ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 354 |||| || ||||| ||||| | ||||| |||||||| ||||||||||||||||||||| Sbjct: 3351694 gcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctccttg 3351635 Query: 355 aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 414 ||||||| | ||||||||| | |||||||| || |||||||| | |||||||||||| Sbjct: 3351634 tacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgcacttg 3351575 Query: 415 atgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactgggggcttc 471 || || || |||||||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct: 3351574 atattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttc 3351518
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 184 bits (93), Expect = 2e-43 Identities = 201/237 (84%) Strand = Plus / Minus Query: 235 gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 294 ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 22127 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 22068 Query: 295 ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 354 |||| || ||||| ||||| | ||||| |||||||||||||||||||| ||||||||| Sbjct: 22067 gcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctccttg 22008 Query: 355 aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 414 ||||| | | ||||||||| | ||||||||||| |||||||| | |||||||||||| Sbjct: 22007 tacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcacttg 21948 Query: 415 atgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactgggggcttc 471 || || || |||||||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct: 21947 atattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttc 21891 Score = 176 bits (89), Expect = 4e-41 Identities = 200/237 (84%) Strand = Plus / Minus Query: 235 gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 294 ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| || Sbjct: 30862 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 30803 Query: 295 ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 354 |||| || ||||| ||||| | ||||| |||||||| ||||||||||||||||||||| Sbjct: 30802 gcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctccttg 30743 Query: 355 aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 414 ||||||| | ||||||||| | |||||||| || |||||||| | |||||||||||| Sbjct: 30742 tacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgcacttg 30683 Query: 415 atgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactgggggcttc 471 || || || |||||||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct: 30682 atattgagaagggtcaccacggcagctttattcagaccctcaccaacagggggcttc 30626
>gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence Length = 1900 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Minus Query: 250 taggagctgaagtgcttcactctgaacttccactcgcccttggcgccatcaaacgagata 309 |||| |||||| |||||||| |||||||||||||| |||||||| ||||||| || | | Sbjct: 1730 taggcgctgaaatgcttcaccctgaacttccactctcccttggcagcatcaaaggacaca 1671 Query: 310 aactccactccctgttcctcagccttcttcaccagcatctcc 351 |||||| | ||||| ||||| |||||||||| |||||||||| Sbjct: 1670 aactccgcgccctgctcctccgccttcttcatcagcatctcc 1629 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Minus Query: 394 gtcttcctattcatgcacttgatgttcaggagggtcaccaaagcagctttgttcaggccc 453 |||||| |||| | ||||||||||||||| || |||||| ||||| |||||||| ||| Sbjct: 1586 gtcttcttatttacgcacttgatgttcagtagagtcacctccgcagccttgttcagcccc 1527 Query: 454 tcgccaactgggggcttc 471 || || || ||||||||| Sbjct: 1526 tcacccacagggggcttc 1509
>gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence Length = 1871 Score = 87.7 bits (44), Expect = 3e-14 Identities = 99/116 (85%), Gaps = 1/116 (0%) Strand = Plus / Minus Query: 237 ttcaccaaa-cccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcgc 295 ||||||||| |||||||| ||||||||||||||| |||||||||||||| |||||| | Sbjct: 1579 ttcaccaaagcccgtaggcgctgaagtgcttcaccctgaacttccactctcccttgacag 1520 Query: 296 catcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctcc 351 | || || || | |||||| | ||||| ||||| ||||||||||||||||||||| Sbjct: 1519 cgtcgaaggacacaaactctgcgccctgctcctccgccttcttcaccagcatctcc 1464 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 408 gcacttgatgttcaggagggtcaccaaagcagctttgttcaggccctcgccaactggggg 467 ||||||||||||||| || |||||| ||||| |||||||| |||||||| || ||||| Sbjct: 1410 gcacttgatgttcagtagagtcacctctgcagccttgttcagcccctcgcccacaggggg 1351 Query: 468 cttc 471 |||| Sbjct: 1350 cttc 1347
>gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence Length = 625 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 250 taggagctgaagtgcttcactctgaacttccactcgcccttggcgccatcaaa 302 |||| ||||||||||||||| |||||||||||||| |||||||| ||||||| Sbjct: 184 taggcgctgaagtgcttcaccctgaacttccactctcccttggcagcatcaaa 236 Score = 44.1 bits (22), Expect = 0.41 Identities = 52/62 (83%) Strand = Plus / Plus Query: 394 gtcttcctattcatgcacttgatgttcaggagggtcaccaaagcagctttgttcaggccc 453 |||||| |||| | ||||||||||||||| || |||||| ||||| |||||||| ||| Sbjct: 328 gtcttcttatttacgcacttgatgttcagtagagtcacctccgcagccttgttcagcccc 387 Query: 454 tc 455 || Sbjct: 388 tc 389
>gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds Length = 732 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 254 agctgaagtgcttcactctgaacttccactc 284 |||||||||||||||| |||||||||||||| Sbjct: 418 agctgaagtgcttcaccctgaacttccactc 388
>gb|AC095044.3| Homo sapiens BAC clone RP11-132B16 from 7, complete sequence Length = 134184 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 320 cctgttcctcagccttcttcac 341 |||||||||||||||||||||| Sbjct: 5906 cctgttcctcagccttcttcac 5885
>gb|AC142295.1| Pan troglodytes BAC clone RP43-80F20 from 7, complete sequence Length = 165071 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 320 cctgttcctcagccttcttcac 341 |||||||||||||||||||||| Sbjct: 140564 cctgttcctcagccttcttcac 140543
>ref|XM_639988.1| Dictyostelium discoideum hypothetical protein (DDB0168011), partial mRNA Length = 4611 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 162 atcatccaaaagaggcagcaattacaaca 190 ||||||||||||| |||| |||||||||| Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522
>ref|XM_639242.1| Dictyostelium discoideum hypothetical protein (DDB0217388), partial mRNA Length = 4611 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 162 atcatccaaaagaggcagcaattacaaca 190 ||||||||||||| |||| |||||||||| Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522
>gb|AC096588.1| Homo sapiens BAC clone RP11-725D20 from 4, complete sequence Length = 150864 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 42 acagaaaaacatgggaaggaactca 66 ||||||||||||| ||||||||||| Sbjct: 93457 acagaaaaacatgagaaggaactca 93481
>emb|BX682233.6| Zebrafish DNA sequence from clone CH211-177P5 in linkage group 16, complete sequence Length = 145536 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 80 agaacaaaagcatcacaaccaatat 104 ||||||||||||||||||| ||||| Sbjct: 40528 agaacaaaagcatcacaactaatat 40552
>gb|AC155231.2| Mus musculus BAC clone RP24-336I23 from chromosome 12, complete sequence Length = 175296 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 aggagctgaagtgcttcactctgaa 275 |||||||| |||||||||||||||| Sbjct: 135270 aggagctgtagtgcttcactctgaa 135294
>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence Length = 541399 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 162 atcatccaaaagaggcagcaattacaaca 190 ||||||||||||| |||| |||||||||| Sbjct: 178831 atcatccaaaagatgcagaaattacaaca 178803
>emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, complete sequence Length = 243870 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 80 agaacaaaagcatcacaaccaatat 104 ||||||||||||||||||| ||||| Sbjct: 17970 agaacaaaagcatcacaactaatat 17994
>emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chromosome 12, complete sequence Length = 214861 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 251 aggagctgaagtgcttcactctgaa 275 |||||||| |||||||||||||||| Sbjct: 206265 aggagctgtagtgcttcactctgaa 206241
>emb|AL954832.12| Zebrafish DNA sequence from clone DKEY-15O4, complete sequence Length = 256126 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 80 agaacaaaagcatcacaaccaatat 104 ||||||||||||||||||| ||||| Sbjct: 208905 agaacaaaagcatcacaactaatat 208929
>gb|AC101722.14| Mus musculus chromosome 5, clone RP23-310L24, complete sequence Length = 172370 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 ctgttcctcagccttcttca 340 |||||||||||||||||||| Sbjct: 121775 ctgttcctcagccttcttca 121794
>gb|AC150424.3| Branchiostoma floridae clone CH302-7J16, complete sequence Length = 154657 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 aaaaagatatgtacagaaaa 49 |||||||||||||||||||| Sbjct: 28955 aaaaagatatgtacagaaaa 28936
>gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosome 17, complete sequence Length = 217187 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 tgtacagaaaaacatgggaaggaa 62 ||||||||| |||||||||||||| Sbjct: 120123 tgtacagaagaacatgggaaggaa 120100
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 tactgctcgtccgtcttcct 401 |||||||||||||||||||| Sbjct: 466077 tactgctcgtccgtcttcct 466058
>gb|BC073354.1| Xenopus laevis similar to Hermansky-Pudlak syndrome 3, mRNA (cDNA clone MGC:80771 IMAGE:5512777), complete cds Length = 3361 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 gaactcatagcagcattcagagaa 83 ||||| |||||||||||||||||| Sbjct: 1829 gaactaatagcagcattcagagaa 1852
>gb|BC041292.1| Xenopus laevis similar to Hermansky-Pudlak syndrome 3, mRNA (cDNA clone IMAGE:4682613), partial cds Length = 1593 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 gaactcatagcagcattcagagaa 83 ||||| |||||||||||||||||| Sbjct: 67 gaactaatagcagcattcagagaa 90
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 tctccttgaacttgtcaaac 366 |||||||||||||||||||| Sbjct: 509945 tctccttgaacttgtcaaac 509926
>gb|AC110034.8| Mus musculus chromosome 3, clone RP23-237L12, complete sequence Length = 188908 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 311 actccactccctgttcctcagccttcttcacc 342 |||||| | |||| |||||||||||||||||| Sbjct: 134888 actccagtacctgctcctcagccttcttcacc 134857
>gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete sequence Length = 131133 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 atgaaaaaagatatgtacagaaaa 49 ||||||||||||||||| |||||| Sbjct: 74940 atgaaaaaagatatgtatagaaaa 74917
>gb|AC161535.5| Mus musculus chromosome 5, clone RP23-26J13, complete sequence Length = 209259 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 ctgttcctcagccttcttca 340 |||||||||||||||||||| Sbjct: 202087 ctgttcctcagccttcttca 202068
>emb|AL590542.4| Human DNA sequence from clone RP11-135F12 on chromosome 6, complete sequence Length = 43345 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 gcatctccttgaacttgtca 363 |||||||||||||||||||| Sbjct: 1794 gcatctccttgaacttgtca 1775
>gb|AC156552.10| Mus musculus chromosome 3, clone RP24-271K21, complete sequence Length = 168716 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 311 actccactccctgttcctcagccttcttcacc 342 |||||| | |||| |||||||||||||||||| Sbjct: 168205 actccagtacctgctcctcagccttcttcacc 168236
>dbj|AB193034.1| Corynebacterium glutamicum DNA, strain specific island 7, strain: R Length = 16484 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 401 tattcatgcacttgatgttcagga 424 ||||||||||||||||||| |||| Sbjct: 14317 tattcatgcacttgatgttgagga 14340
>gb|AY190950.1| Drosophila willistoni clone DWIF01_1_E5 (D1417) genomic sequence Length = 40487 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 cagcattcagagaacaaaag 89 |||||||||||||||||||| Sbjct: 11828 cagcattcagagaacaaaag 11809
>gb|AC002359.1|AC002359 Homo sapiens Xp22 Cosmid U239B3 (from Lawrence Livermore X library) complete sequence Length = 16699 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 tcagccaggtggtcggcttc 233 |||||||||||||||||||| Sbjct: 8656 tcagccaggtggtcggcttc 8675
>dbj|AP002980.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1058D3 Length = 166683 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 attcatgcacttgatgttca 421 |||||||||||||||||||| Sbjct: 104715 attcatgcacttgatgttca 104734
>gb|L28808.1|RABMSD Oryctolagus cuniculus manganese superoxide dismutase mRNA, partial cds Length = 606 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 342 cagcatctccttgaacttgtcaaa 365 |||| ||||||||||||||||||| Sbjct: 348 cagcctctccttgaacttgtcaaa 325 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,445,957 Number of Sequences: 3902068 Number of extensions: 4445957 Number of successful extensions: 92816 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92669 Number of HSP's gapped (non-prelim): 147 length of query: 471 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 449 effective length of database: 17,147,199,772 effective search space: 7699092697628 effective search space used: 7699092697628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)