ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl02d10 |
|---|---|
| Clone Library Name | barley_pub |
>GAG_AVISN (P03342) Gag polyprotein [Contains: Core protein p15; Inner coat| protein p12; Core shell protein p30] (Fragment) Length = 313 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +2 Query: 266 YTWMNQKPASWTHDTKRLIIL*QKTLETKQMPWND 370 Y W NQ P+S++ ++I L + T Q W+D Sbjct: 226 YNWKNQNPSSFSQAPDQVISLLESVFYTHQPTWDD 260
>OR2T6_HUMAN (Q8NHC8) Olfactory receptor 2T6 (OST703)| Length = 309 Score = 30.0 bits (66), Expect = 1.4 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -3 Query: 65 AVIRHGKWYICWMLLATSTVG 3 AV+ G W +CWM+LA+S G Sbjct: 132 AVMTSGGWRVCWMILASSWFG 152
>CHLI_CYACA (Q9TLX7) Magnesium-chelatase subunit chlI (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase) Length = 353 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/38 (31%), Positives = 23/38 (60%) Frame = -1 Query: 175 GILCACGRVLFFPESILVLVEHVVNIVCVCCYSRWSLL 62 G+L R L + + I +L +H+V+++ C S W+L+ Sbjct: 142 GLLAKANRGLLYVDEINLLDDHLVDVLLDCSASGWNLV 179
>GPC6A_RAT (Q70VB1) G-protein coupled receptor family C group 6 member A| precursor Length = 928 Score = 28.9 bits (63), Expect = 3.0 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +2 Query: 278 NQKPASWTHDTKRLIIL*QKTLETKQMPWNDGIWLLDNVGIIGS 409 N A+WT+DT KT+ET ND +W G+I S Sbjct: 378 NYSQATWTYDTT-------KTIETHLFKRNDFLWHYTEPGLIHS 414
>HRCA_CHLCV (Q824B0) Heat-inducible transcription repressor hrcA| Length = 386 Score = 28.9 bits (63), Expect = 3.0 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 3/91 (3%) Frame = +1 Query: 1 RPTVDVANNIQQIYHFP---CRITADSTGNNNTHRQC*QHARPVPVYSLGKRELFHTHTK 171 RPT + N + I+ P C + N T PV +L +E+F T T Sbjct: 278 RPTAFIGNELSDIFRTPNPQCAVITIPYYMNRTPLGAFGVLGPV---NLPYKEIFKTLTI 334 Query: 172 FQTKIDRYSTKFMFLLYDLIWRPSSSHPTIS 264 F KI T+ + RP S PT+S Sbjct: 335 FADKIKASLTQSFYKFKLSFRRPCPSDPTLS 365
>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7059 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPREYTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7094 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPREYTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPREYTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7094 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPREYTGTGRACCQHCLC----VLLFPVESAVIRHGKWY 39 + +++++VW NF+ ++ ++P C + +C L FP E +VI H +W Sbjct: 3063 IVFVNVIVWCVNFMMLFVFQVYPT-------LSCVYAICYFYATLYFPSEISVIMHLQWL 3115 Query: 38 ICW 30 + + Sbjct: 3116 VMY 3118
>FGRL1_CHICK (Q7T2H2) Fibroblast growth factor receptor-like 1 precursor| Length = 487 Score = 28.5 bits (62), Expect = 4.0 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = +1 Query: 49 PCRITADSTGNNNTHRQC*QHARPVPVYSLGKRELFHTHTKFQTKIDRYSTKFMFLLYDL 228 P T D G T QC + PV KR + T +K+ + ID KF+ L Sbjct: 247 PVNTTVDYGGT--TSFQCKVRSDVKPVIQWLKRVEYGTESKYNSTIDVGGQKFVVLPTGE 304 Query: 229 IW-RPSSSH 252 +W RP S+ Sbjct: 305 VWSRPDGSY 313
>COX1_CRION (P98003) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Fragment) Length = 340 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -2 Query: 180 GLEFCVRVEEFSFSQRVYWYWSSMLSTLSVCVVIP---GGV 67 G FC R + FSF + W S+++ L + + +P GGV Sbjct: 169 GTLFCCRRKFFSFLNWTLFIWGSLITALLLIITLPVLAGGV 209
>FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1885 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +2 Query: 89 HTDNVDNMLDQYQYTLWEKENSST 160 + DNVD +L+QY+Y L+ + T Sbjct: 1614 NADNVDKLLEQYEYVLYPSRSIQT 1637
>YGZB_BACSU (Q7WY74) UPF0295 protein ygzB| Length = 117 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/42 (33%), Positives = 26/42 (61%) Frame = -2 Query: 132 VYWYWSSMLSTLSVCVVIPGGVCCNSAWEMVYLLDVIGNIHC 7 V ++W MLST +V V+ PG C+ +++ ++D+ +HC Sbjct: 55 VVYFWIGMLSTKAVRVICPG---CDKETKVLGVVDMC--MHC 91
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 27.7 bits (60), Expect = 6.8 Identities = 8/17 (47%), Positives = 11/17 (64%) Frame = +2 Query: 254 PPSAYTWMNQKPASWTH 304 PPS++ W + P WTH Sbjct: 41 PPSSFGWSDPDPCKWTH 57
>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7176 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPREYTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 30 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3150 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3205
>R1AB_CVM2 (Q9PYA3) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase ( Length = 7124 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPREYTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 30 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3096 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3151
>SFRP5_HUMAN (Q5T4F7) Secreted frizzled-related protein 5 precursor (sFRP-5)| (Secreted apoptosis-related protein 3) (SARP-3) (Frizzled-related protein 1b) (FRP-1b) Length = 317 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +2 Query: 116 DQYQYTLWEKENSSTRTQNSKPK*TDTPQSSCFCYMI*FGDLLLP--IPPSAYTWMNQKP 289 ++Y Y W+ E R+ + P+ D P C+ + + + LP + + + Q+ Sbjct: 30 EEYDYYGWQAEPLHGRSYSKPPQCLDIPADLPLCHTVGYKRMRLPNLLEHESLAEVKQQA 89 Query: 290 ASW 298 +SW Sbjct: 90 SSW 92
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Frame = -3 Query: 200 VEYLSILVW--NFVCVWKSSLFPREYTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW 30 V ++++VW NF+ ++ ++P T + C + L FP E +V+ H +W + + Sbjct: 3153 VVVINVIVWCINFLMLFVFQVYP---TLSCLYACFYFYTTLYFPSEISVVMHLQWLVMY 3208
>SFRP5_BOVIN (Q9XSC1) Secreted frizzled-related protein 5 precursor (sFRP-5)| Length = 315 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +2 Query: 116 DQYQYTLWEKENSSTRTQNSKPK*TDTPQSSCFCYMI*FGDLLLP--IPPSAYTWMNQKP 289 ++Y Y W+ E R+ + P+ D P C+ + + + LP + + + Q+ Sbjct: 28 EEYDYYGWQTEPLHGRSYSKPPQCLDIPADLPLCHTVGYKRMRLPNLLEHESLAEVKQQA 87 Query: 290 ASW 298 +SW Sbjct: 88 SSW 90
>PTTG_PONPY (Q5NVI6) Pituitary tumor-transforming gene 1 protein-interacting| protein precursor (Pituitary tumor-transforming gene protein-binding factor) (PTTG-binding factor) (PBF) Length = 180 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Frame = -3 Query: 173 NFVCVWKSSLFPREYTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW-----MLLATST 9 N C+W T +AC + + +L P + +W +CW +++ S Sbjct: 54 NVSCLW---------CNTNKACLDYPVTSVLPPASLCKLSSARWGVCWVNFEALIITMSV 104 Query: 8 VG 3 VG Sbjct: 105 VG 106
>PTTG_HUMAN (P53801) Pituitary tumor-transforming gene 1 protein-interacting| protein precursor (Pituitary tumor-transforming gene protein-binding factor) (PTTG-binding factor) (PBF) Length = 180 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Frame = -3 Query: 173 NFVCVWKSSLFPREYTGTGRACCQHCLCVLLFPVESAVIRHGKWYICW-----MLLATST 9 N C+W T +AC + + +L P + +W +CW +++ S Sbjct: 54 NVSCLW---------CNTNKACLDYPVTSVLPPASLCKLSSARWGVCWVNFEALIITMSV 104 Query: 8 VG 3 VG Sbjct: 105 VG 106
>LEU2_SYNP6 (Q5MZY3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 468 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -3 Query: 284 SGSSMCRLMVGWEEEGRQIKSYSRNMNF 201 +G SMC M + EGRQI + S N NF Sbjct: 405 AGCSMCLAMNPDKLEGRQISASSSNRNF 432
>GALC_HUMAN (P54803) Galactocerebrosidase precursor (EC 3.2.1.46) (GALCERase)| (Galactosylceramidase) (Galactosylceramide beta-galactosidase) (Galactocerebroside beta-galactosidase) Length = 669 Score = 27.3 bits (59), Expect = 8.8 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +1 Query: 178 TKIDRYSTKFMFLLYDLIW-RPSSSHPTISLHMDEPETSFMDT*HQETHHPL 330 TK+ + S +F+F D +W S T+SLH DE T T ++ +PL Sbjct: 412 TKLGKTSERFLFKQLDSLWLLDSDGSFTLSLHEDELFTLTTLTTGRKGSYPL 463 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,230,150 Number of Sequences: 219361 Number of extensions: 1586437 Number of successful extensions: 4191 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4075 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4188 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
